Combining spawn egg counts, individual photo-ID and genetic fingerprinting to estimate the population size and sex ratio of an endangered amphibian

According to the International Union for Conservation of Nature Red List, 41% of the world's amphibian species are threatened with extinction, making them more threatened than any other vertebrate group nowadays. Given the global amphibian crisis, comprehensive understanding of demographics and population trends of declining and threatened species is essential for effective management and conservation strategies. Counting egg spawns is widely used to assess population abundance in pond breeding anurans. However, it is unknown how such counts translate into robust population size estimations. We monitored the breeding activity of the Natterjack toad (Epidalea calamita), combining egg string counts and individual photo-identification with Capture-Mark-Recapture population size and operational sex ratio estimation. Male Natterjack toads were identified by the pattern of natural markings with repeated ID of the same individual confirmed for 10% of the samples using genetic fingerprinting. We identified 647 unique individuals within a closed study population at Caherdaniel, Co Kerry. Population estimates derived from egg string counts estimated a breeding population of 368 females (95% CI 353-384) and Capture-Mark-Recapture estimated a breeding population of 1698 males (95% CI 1000-2397). The female:male sex ratio was conservatively estimated at 1:5 (95% CI 1:3-1:6) where 62% ± 6% of females were assumed to spawn. These substantially departed from any priori assumption of 1:1 which could have underestimated the breeding population by up to 72%. Where amphibian absolute population size estimation is necessary, methods should include empirical survey data on operational sex ratios and not rely on assumptions or those derived from the literature which may be highly population and/or context-dependent.

Population trend inferred from aural surveys for calling anurans in Korea

Amphibian populations fluctuate naturally in size and range and large datasets are required to establish trends in species dynamics. To determine population trends for the endangered Suweon Treefrog (Dryophytes suweonensis), we conducted aural surveys in 2015, 2016, and 2017 at each of 122 sites where the species was known to occur in the Republic of Korea. Despite being based on individual counts, the focus of this study was to establish population trends rather than population size estimates, and we found both environmental and landscape variables to be significant factors. Encroachment was also a key factor that influenced both the decreasing number of calling individuals and the negative population dynamics, represented here by the difference in the number of calling individuals between years. Generally, most sites displayed minimal differences in the number of calling males between years, although there was a large fluctuation in the number of individuals at some sites. Finally, when adjusted for the overall population size difference between years, we found the population size to be decreasing between 2015 and 2017, with a significant decrease in the number of calling individuals at specific sites. High rate of encroachment was the principal explanatory factor behind these marked negative peaks in population dynamics.

Relationship between agro-environmental variables and breeding Hylids in rice paddies

When natural wetlands are destroyed, many anuran species are forced to breed in alternative habitats such as rice paddies. We conducted field surveys for the endangered Dryophytes suweonensis and the numerous D. japonicus, from the beginning of the breeding season until two weeks after its peak. We recorded the presence, number of individuals and calling indices for each species. We hypothesized that D. japonicus would start breeding earlier than D. suweonensis, which would have originally been breeding solely in floodplains. The results of our analyses demonstrate that the rice cultivation phase was the most important factor in predicting the calling activities of both species. Furthermore, peak calling activities of both species matched the optimal hydroperiod in rice paddies. In addition, D. japonicus breeding behaviour was influenced by environmental variables such as temperature, whereas D. suweonensis seemed to require the planting of rice seedlings to initiate breeding. Therefore, as both Dryophytes species’ breeding activities are influenced by agro-environmental variables, this study highlights the importance of also preserving anthropogenically modified landscapes for the conservation of species.

Reliable effective number of breeders/adult census size ratios in seasonal-breeding species: Opportunity for integrative demographic inferences based on capture-mark-recapture data and multilocus genotypes

The ratio of the effective number of breeders (Nb) to the adult census size (Na), Nb/Na, approximates the departure from the standard capacity of a population to maintain genetic diversity in one reproductive season. This information is relevant for assessing population status, understanding evolutionary processes operating at local scales, and unraveling how life-history traits affect these processes. However, our knowledge on Nb/Na ratios in nature is limited because estimation of both parameters is challenging. The sibship frequency (SF) method is adequate for reliable Nb estimation because it is based on sibship and parentage reconstruction from genetic marker data, thereby providing demographic inferences that can be compared with field-based information. In addition, capture-mark-recapture (CMR) robust design methods are well suited for Na estimation in seasonal-breeding species. We used tadpole genotypes of three pond-breeding amphibian species (Epidalea calamita, Hyla molleri, and Pelophylax perezi, n = 73-96 single-cohort tadpoles/species genotyped at 15-17 microsatellite loci) and candidate parental genotypes (n = 94-300 adults/species) to estimate Nb by the SF method. To assess the reliability of Nb estimates, we compared sibship and parentage inferences with field-based information and checked for the convergence of results in replicated subsampled analyses. Finally, we used CMR data from a 6-year monitoring program to estimate annual Na in the three species and calculate the Nb/Na ratio. Reliable ratios were obtained for E. calamita (Nb/Na = 0.18-0.28) and P. perezi (0.5), but in H. molleri, Na could not be estimated and genetic information proved insufficient for reliable Nb estimation. Integrative demographic studies taking full advantage of SF and CMR methods can provide accurate estimates of the Nb/Na ratio in seasonal-breeding species. Importantly, the SF method provides results that can be readily evaluated for reliability. This represents a good opportunity for obtaining robust demographic inferences with wide applications for evolutionary and conservation research.

Life history tactics shape amphibians' demographic responses to the North Atlantic Oscillation

Over the last three decades, climate abnormalities have been reported to be involved in biodiversity decline by affecting population dynamics. A growing number of studies have shown that the North Atlantic Oscillation (NAO) influences the demographic parameters of a wide range of plant and animal taxa in different ways. Life history theory could help to understand these different demographic responses to the NAO. Indeed, theory states that the impact of weather variation on a species' demographic traits should depend on its position along the fast-slow continuum. In particular, it is expected that NAO would have a higher impact on recruitment than on adult survival in slow species, while the opposite pattern is expected occur in fast species. To test these predictions, we used long-term capture-recapture datasets (more than 15,000 individuals marked from 1965 to 2015) on different surveyed populations of three amphibian species in Western Europe: Triturus cristatus, Bombina variegata, and Salamandra salamandra. Despite substantial intraspecific variation, our study revealed that these three species differ in their position on a slow-fast gradient of pace of life. Our results also suggest that the differences in life history tactics influence amphibian responses to NAO fluctuations: Adult survival was most affected by the NAO in the species with the fastest pace of life (T. cristatus), whereas recruitment was most impacted in species with a slower pace of life (B. variegata and S. salamandra). In the context of climate change, our findings suggest that the capacity of organisms to deal with future changes in NAO values could be closely linked to their position on the fast-slow continuum.

Impact of land reclamation and agricultural water regime on the distribution and conservation status of the endangered Dryophytes suweonensis

Knowledge about the distribution and habitat preferences of a species is critical for its conservation. The Suweon Treefrog (Dryophytes suweonensis) is an endangered species endemic to the Republic of Korea. We conducted surveys from 2014 to 2016 at 890 potentially suitable sites across the entire range of the species in South Korea. We then assessed whether D. suweonensis was found in the current and ancestral predicted ranges, reclaimed and protected areas, and how the presence of agricultural floodwater affected its occurrence. Our results describe a 120 km increase in the southernmost known distribution of the species, and the absence of the species at lower latitudes. We then demonstrate a putative constriction on the species ancestral range due to urban encroachment, and provide evidence for a significant increase in its coastal range due to the colonisation of reclaimed land by the species. In addition, we demonstrate that D. suweonensis is present in rice fields that are flooded with water originating from rivers as opposed to being present in rice fields that are irrigated from underground water. Finally, the non-overlap of protected areas and the occurrence of the species shows that only the edge of a single site where D. suweonensis occurs is legally protected. Based on our results and the literature, we suggest the design of a site fitting all the ecological requirements of the species, and suggest the use of such sites to prevent further erosion in the range of D. suweonensis.

Biodiversity assessment: selecting sampling techniques to access anuran diversity in grassland ecosystems

Context Species richness is a relevant diversity component of community ecology and many standardised techniques are available for data estimations. However, each technique is appropriate to a few environment types and has its own sampling biases. Thus, it is necessary to test the effectiveness of traditional and heterodox sampling techniques in different habitat types, especially for highly diverse taxonomic groups, such as anurans. Aims We present a comparison based on species richness and detection between the following techniques: acoustic survey with visual encounter of adults (ASVE), automated digital recorders (ADR) and dip net survey of larvae (DSL). We sought to determine: (1) the most efficient sampling technique to survey species richness in ponds of grasslands habitats; and (2) whether efficiency is related to the particular life history traits of species. Methods During 2014 and 2015, we sampled 47 ponds distributed in vulnerable Brazilian grassland areas using ASVE, ADR and DSL. Anuran species were surveyed across two seasons that coincide with the peak of anuran breeding activity in the region. Key results Species richness recorded by ADR and ASVE was higher when compared with DSL. In terms of combined utilisation, ADR with DSL was as efficient as using all techniques together. However, species detection differed among sampling techniques. ADR had the higher percentage of species that were sampled exclusively in at least one breeding pond and DSL detected two species that were not detected by the other techniques. Conclusions Our findings suggest that ADR includes most species whose males call for only a few hours during the night or day, and DSL exclusively detects ‘explosive breeders’, incorporating a wide range of life history traits. ASVE becomes unnecessary since it does not include specific variations of species’ calling behaviour. It is susceptible to a discrepancy of survey data among observers and potentially causes a human disturbance effect in the estimated data. Implications We strongly recommended the use of ADR rather than ASVE, and we recommended DSL as a supplementary technique for population monitoring and surveys in grassland areas. We encourage researchers to include ADR and DSL in future works to survey biologic data outside of the short sampling event for which ASVE is commonly utilised, thereby improving the interpretation of biological patterns.