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Vicario S, Terraneo TI, Chimienti G, Maggioni D, Marchese F, Purkis SJ, Eweida AA, Rodrigue M, Benzoni F. Molecular diversity of black corals from the Saudi Arabian Red Sea: a first assessment. INVERTEBR SYST 2024; 38:IS23041. [PMID: 38744524 DOI: 10.1071/is23041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 03/12/2024] [Indexed: 05/16/2024]
Abstract
Black corals occur as part of benthic assemblages from shallow to deep waters in all oceans. Despite the importance in many benthic ecosystems, where these act as biodiversity aggregators, antipatharians remain poorly studied, with 75% of the known species occurring below recreational SCUBA diving depth limits. Currently, information regarding the diversity and evolutionary history is limited, with most studies focusing on Hawaii and the South Pacific Ocean. Other regions of the world have received less attention, such as the Red Sea, where only two black coral families and four genera have been recorded. We provide the first analysis of the molecular diversity of black corals in the eastern Gulf of Aqaba and the northern and central Saudi Arabian Red Sea, based on a dataset of 161 antipatharian colonies collected down to 627 m deep. Based on specimen morphology, we ascribed our material to 11 genera belonging to 4 of the 7 known Antipatharia families, i.e. Antipathidae, Aphanipathidae, Myriopathidae and Schizopathidae. The genus level phylogeny of three intergenic mitochondrial regions, the trnW-IGR-nad2 (IgrW ), nad5-IGR-nad1 (IgrN ) and cox3-IGR-cox1 was reconstructed including previously published material. Overall, we recovered six molecular clades that included exclusively Red Sea sequences, with the highest diversity occurring at mesophotic depths. This study highlights that diversity of black corals in the Red Sea is much higher than previously known, with seven new generic records, suggesting that this basin may be a hotspot for antipatharian diversity as is known for other taxa. Our results recovered unresolved relationships within the order at the familial and generic levels. This emphasises the urgent need for an integration of genomic-wide data with a re-examination of informative morphological features necessary to revise the systematics of the order at all taxonomic levels.
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Affiliation(s)
- Silvia Vicario
- Marine Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; and Division of Biological and Environmental Science and Engineering, Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia
| | - Tullia Isotta Terraneo
- Division of Biological and Environmental Science and Engineering, Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia
| | - Giovanni Chimienti
- Division of Biological and Environmental Science and Engineering, Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia; and Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy
| | - Davide Maggioni
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy; and Marine Research and Higher Education (MaRHE) Center, University of Milano-Bicocca, Faafu Magoodhoo, Maldives
| | - Fabio Marchese
- Division of Biological and Environmental Science and Engineering, Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia
| | - Sam J Purkis
- Department of Marine Geosciences, Rosenstiel School of Marine, Atmospheric, and Earth Science, University of Miami, Miami, FL 33149, USA; and Khaled bin Sultan Living Oceans Foundation, Annapolis, USA
| | | | | | - Francesca Benzoni
- Marine Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; and Division of Biological and Environmental Science and Engineering, Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia
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Cruz BA, Cappelmann A, Chutjian H, Roman JC, Reid MA, Wright J, Gonzalez AD, Keyman T, Griffith KM, Appiah-Madson HJ, Distel DL, Hayes VE, Drewery J, Pettay DT, Staton JL, Brugler MR. Complete mitochondrial genomes of the black corals Alternatipathesmirabilis Opresko & Molodtsova, 2021 and Parantipatheslarix (Esper, 1788) (Cnidaria, Anthozoa, Hexacorallia, Antipatharia, Schizopathidae). Zookeys 2024; 1196:79-93. [PMID: 38560095 PMCID: PMC10980879 DOI: 10.3897/zookeys.1196.116837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 02/05/2024] [Indexed: 04/04/2024] Open
Abstract
We describe the complete mitogenomes of the black corals Alternatipathesmirabilis Opresko & Molodtsova, 2021 and Parantipatheslarix (Esper, 1790) (Cnidaria, Anthozoa, Hexacorallia, Antipatharia, Schizopathidae). The analysed specimens include the holotype of Alternatipathesmirabilis, collected from Derickson Seamount (North Pacific Ocean; Gulf of Alaska) at 4,685 m depth and a potential topotype of Parantipatheslarix, collected from Secca dei Candelieri (Mediterranean Sea; Tyrrhenian Sea; Salerno Gulf; Italy) at 131 m depth. We also assemble, annotate and make available nine additional black coral mitogenomes that were included in a recent phylogeny (Quattrini et al. 2023b), but not made easily accessible on GenBank. This is the first study to present and compare two mitogenomes from the same species of black coral (Stauropathesarctica (Lütken, 1871)) and, thus, place minimum boundaries on the expected level of intraspecific variation at the mitogenome level. We also compare interspecific variation at the mitogenome-level across five different specimens of Parantipathes Brook, 1889 (representing at least two different species) from the NE Atlantic and Mediterranean Sea.
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Affiliation(s)
- Brendan A. Cruz
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Anneau Cappelmann
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Hope Chutjian
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Jude C. Roman
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Mason A. Reid
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Jacob Wright
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Aydanni D. Gonzalez
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Taylor Keyman
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Kierstin M. Griffith
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Hannah J. Appiah-Madson
- Ocean Genome Legacy Center, Northeastern University, 430 Nahant Road, Nahant, MA 01908, USANortheastern UniversityNahantUnited States of America
| | - Daniel L. Distel
- Ocean Genome Legacy Center, Northeastern University, 430 Nahant Road, Nahant, MA 01908, USANortheastern UniversityNahantUnited States of America
| | - Vonda E. Hayes
- Department of Fisheries & Oceans Canada, Northwest Atlantic Fisheries Centre, 80 East White Hills Road, St. John’s, Newfoundland & Labrador, A1C 5X1, CanadaNorthwest Atlantic Fisheries CentreNewfoundland & LabradorCanada
| | - Jim Drewery
- Marine Directorate of Scottish Government, Marine Laboratory, 375 Victoria Road, Aberdeen AB11 9DB, Scotland, UKMarine Directorate of Scottish Government, Marine LaboratoryAberdeenUnited Kingdom
| | - D. Tye Pettay
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Joseph L. Staton
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
| | - Mercer R. Brugler
- Department of Natural Sciences, University of South Carolina Beaufort, 1100 Boundary St, Beaufort, SC 29902, USAUniversity of South Carolina BeaufortBeaufortUnited States of America
- Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USAAmerican Museum of Natural HistoryNew YorkUnited States of America
- Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, 10th St. & Constitution Ave. NW, Washington, DC 20560, USANational Museum of Natural History, Smithsonian InstitutionWashingtonUnited States of America
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Chimienti G, Terraneo TI, Vicario S, Marchese F, Purkis SJ, Abdulla Eweida A, Rodrigue M, Benzoni F. A new species of Bathypathes (Cnidaria, Anthozoa, Antipatharia, Schizopathidae) from the Red Sea and its phylogenetic position. Zookeys 2022; 1116:1-22. [PMID: 36760986 PMCID: PMC9848741 DOI: 10.3897/zookeys.1116.79846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Accepted: 06/11/2022] [Indexed: 11/12/2022] Open
Abstract
A black coral, Bathypathesthermophila Chimienti, sp. nov. is described from the Saudi Arabian coasts of the Gulf of Aqaba and north Red Sea (Neom area) using an integrated taxonomic approach. The morphological distinctiveness of the new species is confirmed by molecular analyses. The species thrives in warm and high salinity waters typical of the Red Sea at bathyal depths. It can form colony aggregations on muddy bottoms with scattered, small hard substrates. Colonies are monopodial, feather-like, and attached to a hard substrate through a thorny basal plate. Pinnules are simple, arranged biserially and alternately, and all the same length (up to approximately 20 cm) except for few, proximal ones. Spines are triangular, laterally compressed, subequal, smooth, and simple or rarely bifurcated. Polyps are elongated transversely, 1.5-2.0 mm in transverse diameter. Large colonies can have one or few branches, whose origin is discussed. The phylogenetic position of B.thermophila sp. nov. within the order Antipatharia, recovered using three mitochondrial markers, shows that it is nested within the family Schizopathidae. It is close to species in the genera Parantipathes, Lillipathes, Alternatipathes, and Umbellapathes rather than to the other available representatives of the genus Bathypathes, as currently defined based on morphology. In agreement with previous findings, our results question the evolutionary significance of morphological characters traditionally used to discriminate Antipatharia at higher taxonomic level.
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Affiliation(s)
- Giovanni Chimienti
- Department of Biology, University of Bari Aldo Moro, Bari, ItalyUniversity of Bari Aldo MoroBariItaly,CoNISMa, Rome, ItalyCoNISMaRomeItaly
| | - Tullia Isotta Terraneo
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi ArabiaKing Abdullah University of Science and TechnologyThuwalSaudi Arabia
| | - Silvia Vicario
- University of Milano Bicocca, Milan, ItalyUniversity of Milano BicoccaMilanItaly
| | - Fabio Marchese
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi ArabiaKing Abdullah University of Science and TechnologyThuwalSaudi Arabia
| | - Sam J. Purkis
- Center for Carbonate Research, Department of Marine Geosciences, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL 33149, USAUniversity of MiamiMiamiUnited States of America,Khaled bin Sultan Living Oceans Foundation, Annapolis, U.S.A.Khaled bin Sultan Living Oceans FoundationAnnapolisUnited States of America
| | | | | | - Francesca Benzoni
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi ArabiaKing Abdullah University of Science and TechnologyThuwalSaudi Arabia
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Molodtsova TN, Opresko DM, Wagner D. Description of a new and widely distributed species of Bathypathes (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) previously misidentified as Bathypathes alternata Brook, 1889. PeerJ 2022; 10:e12638. [PMID: 35186449 PMCID: PMC8833236 DOI: 10.7717/peerj.12638] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 11/24/2021] [Indexed: 01/07/2023] Open
Abstract
For many years an undescribed species of the genus Bathypathes has been misidentified as Bathypathes alternata Brook, 1889 (a species currently re-assigned to the genus Alternatipathes). This new species is rather common at mid- and lower bathyal depths of the Pacific, Atlantic and Indian oceans, often in areas with high concentrations of commercially valuable cobalt-rich ferromanganese crusts, where it was observed in underwater photo and video transects to occur in high densities. Under the name B. alternata this species is recorded in several inventories and databases. There is an urgent need for a formal description of this misidentified and widely distributed species to avoid further confusion. The new species is superficially similar to A. alternata in having a monopodial corallum and simple, bilateral and alternately arranged pinnules. However, it differs from the former in that it has an upright corallum with a straight pinnulated part (vs. a horizontally bent pinnulated part), pinnules of uniform length and density (vs. decreasing regularly distally), and a constant distal angle formed by the pinnules and the stem along different parts of the corallum (vs. a decreasing distal angle near the top). The new species can therefore be easily distinguished from A. alternata in underwater imagery. We formally describe this new species in the genus Bathypathes and assign it the new name B. pseudoalternata. An extensive synonymy list with previous misidentified records is provided. To evaluate the distributional patterns of the new species we review the geographic distribution of antipatharians reported below 800 m. The majority of the hitherto described lower bathyal and abyssal species have been recorded from one biogeographic province; however, 20 species are known from more than two provinces, and only three species are widely distributed (>5 provinces), including the newly described Bathypathes pseudoalternata. Members of the family Schizopathidae, to which the new species belongs, represent the majority of the lower bathyal (50.54%) and abyssal (82.35%) species.
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Affiliation(s)
- Tina N. Molodtsova
- P.P. Shirshov Institute of Oceanology of Russian Academy of Sciences, Moscow, Russia
| | - Dennis M. Opresko
- U.S. National Museum of Natural History, Smithsonian Institution, Washington, DC, United States
| | - Daniel Wagner
- Conservation International, Center for Oceans, Arlington, VA, United States
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Mitogenomics reveals low variation within a trigeneric complex of black corals from the North Pacific Ocean. ORG DIVERS EVOL 2022. [DOI: 10.1007/s13127-021-00537-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Opresko DM, Molodtsova TN. New species of deep-sea Antipatharians from the North Pacific (Cnidaria: Anthozoa: Antipatharia), Part 2. Zootaxa 2021; 4999:401-422. [PMID: 34811337 DOI: 10.11646/zootaxa.4999.5.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Indexed: 11/04/2022]
Abstract
Five new species of deep-sea antipatharian corals are described from the North Pacific primarily collected off the coast of Alaska and on adjacent seamounts. All the species are referred to the family Schizopathidae. Described as new are: Alternatipathes mirabilis, Bathypathes ptiloides, Bathypathes tiburonae, Bathypathes alaskensis, and Parantipathes pluma. Illustrations of the type material of Bathypathes patula, B. patula var. plenispina and B. tenuis are provided for comparative proposes. Bathypathes patula var. plenispina is here recognized as a species distinct from B. patula, and B. tenuis is considered incertae sedis due to the poor condition of the type material.
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Affiliation(s)
- Dennis M Opresko
- Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA..
| | - Tina N Molodtsova
- P.P. Shirshov Institute of Oceanology, RAS, 36 Nakhimovsky prospect, Moscow 117997, Russia.
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Opresko DM. New species of black corals (Cnidaria: Anthozoa: Antipatharia) from the New Zealand region, part 2. NEW ZEALAND JOURNAL OF ZOOLOGY 2019. [DOI: 10.1080/03014223.2019.1650783] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Dennis M. Opresko
- Department of Invertebrate Zoology, U.S. National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
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Bo M, Barucca M, Biscotti MA, Brugler MR, Canapa A, Canese S, Lo Iacono C, Bavestrello G. Phylogenetic relationships of Mediterranean black corals (Cnidaria : Anthozoa : Hexacorallia) and implications for classification within the order Antipatharia. INVERTEBR SYST 2018. [DOI: 10.1071/is17043] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The Mediterranean black coral fauna includes type species of four antipatharian genera belonging to four different families, therefore phylogenetic studies hold great potential for enhancing systematics within the order. The analysis of six Mediterranean antipatharian species by means of nuclear sequence data of internal transcribed spacer (ITS1 and ITS2) rDNA confirms the separation into different families, as was previously noted on a morphological basis, with a clear distinction of the family Leiopathidae, whose position is supported by a unique number of mesenteries and lack of spines on thicker ramifications. The position of a newly recorded black coral species for the Mediterranean basin belonging to the genus Phanopathes is discussed. Antipathes dichotoma, the type species of the genus Antipathes, on which the order Antipatharia was based, does not group with other members of the family Antipathidae. Supporting a recent finding based on mitochondrial markers, this suggests a critical need for revision of the families that will be impacted by reassignment of this nomenclaturally important taxon.
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Exploration of the Canyon-Incised Continental Margin of the Northeastern United States Reveals Dynamic Habitats and Diverse Communities. PLoS One 2015; 10:e0139904. [PMID: 26509818 PMCID: PMC4624883 DOI: 10.1371/journal.pone.0139904] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Accepted: 09/18/2015] [Indexed: 11/19/2022] Open
Abstract
The continental margin off the northeastern United States (NEUS) contains numerous, topographically complex features that increase habitat heterogeneity across the region. However, the majority of these rugged features have never been surveyed, particularly using direct observations. During summer 2013, 31 Remotely-Operated Vehicle (ROV) dives were conducted from 494 to 3271 m depth across a variety of seafloor features to document communities and to infer geological processes that produced such features. The ROV surveyed six broad-scale habitat features, consisting of shelf-breaching canyons, slope-sourced canyons, inter-canyon areas, open-slope/landslide-scar areas, hydrocarbon seeps, and Mytilus Seamount. Four previously unknown chemosynthetic communities dominated by Bathymodiolus mussels were documented. Seafloor methane hydrate was observed at two seep sites. Multivariate analyses indicated that depth and broad-scale habitat significantly influenced megafaunal coral (58 taxa), demersal fish (69 taxa), and decapod crustacean (34 taxa) assemblages. Species richness of fishes and crustaceans significantly declined with depth, while there was no relationship between coral richness and depth. Turnover in assemblage structure occurred on the middle to lower slope at the approximate boundaries of water masses found previously in the region. Coral species richness was also an important variable explaining variation in fish and crustacean assemblages. Coral diversity may serve as an indicator of habitat suitability and variation in available niche diversity for these taxonomic groups. Our surveys added 24 putative coral species and three fishes to the known regional fauna, including the black coral Telopathes magna, the octocoral Metallogorgia melanotrichos and the fishes Gaidropsarus argentatus, Guttigadus latifrons, and Lepidion guentheri. Marine litter was observed on 81% of the dives, with at least 12 coral colonies entangled in debris. While initial exploration revealed the NEUS region to be both geologically dynamic and biologically diverse, further research into the abiotic conditions and the biotic interactions that influence species abundance and distribution is needed.
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Brugler MR, Opresko DM, France SC. The evolutionary history of the order Antipatharia (Cnidaria: Anthozoa: Hexacorallia) as inferred from mitochondrial and nuclear DNA: implications for black coral taxonomy and systematics. Zool J Linn Soc 2013. [DOI: 10.1111/zoj.12060] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mercer R. Brugler
- Department of Biology; University of Louisiana at Lafayette; PO Box 42451 Lafayette LA USA
| | - Dennis M. Opresko
- Smithsonian Institution; National Museum of Natural History; Washington, DC USA
| | - Scott C. France
- Department of Biology; University of Louisiana at Lafayette; PO Box 42451 Lafayette LA USA
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