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Shen Y, Hossain MZ, Ahmed KA, Rahman S. An open set model for pest identification. Comput Biol Chem 2024; 108:108002. [PMID: 38061169 DOI: 10.1016/j.compbiolchem.2023.108002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 12/04/2023] [Accepted: 12/04/2023] [Indexed: 01/22/2024]
Abstract
Agricultural pest identification is a prerequisite for increasing crop production and meeting global food demands. Generally, numerous phenotypic and genotypic features are widely utilized for species-level pest identification. However, the approaches are time-consuming and require expert knowledge in relevant fields. Numerous image-based machine learning (ML) models also exist to identify insect pests in agricultural fields. The models are significantly rely on a large, manually curated dataset and are close-set in nature. Our study aims to develop an open set pest identification approach by adding the capability of rejecting any irrelevant inputs. Tephritid fruit flies (Diptera:Tephritidae) are considered as an example since they are the most economically important agricultural pests worldwide. Images of the fruit flies were collected from a publicly available database and filtered to exclude uninformative images using a deep learning model (Inception-V3) and an unsupervised k-means clustering method. For the closed-set identification task, our EfficientNet-B2 model classified four major genera of notorious tephritid flies, namely, Anastrepha, Ceratitis, Rhagoletis, and Bactrocera with an accuracy of 89.65%. We further improvise our proposed model for open-set recognition tasks to leverage the identification beyond the trained datasets. The open set model achieved an overall accuracy of 86.48% and a macro F1-score of 94.44% on the four genera and an unknown class. Our proposed model can be a practical and effective pest identification tool for harmful fruit flies. In addition, the model is easy to implement with existing agricultural pest control systems in an open-world scenario.
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Affiliation(s)
- Yefeng Shen
- School of Computing, Australian National University, Canberra, Australia
| | - Md Zakir Hossain
- School of Computing, Australian National University, Canberra, Australia; School of Elec Eng, Comp and Math Sci (EECMS), Curtin University, Perth, Australia; CSIRO Agriculture & Food, & Data61, Canberra, Australia.
| | - Khandaker Asif Ahmed
- Australian Centre for Disease Preparedness, CSIRO, East Geelong, Victoria, Australia
| | - Shafin Rahman
- Department of Electrical & Computer Engineering, North South University, Bangladesh
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Morrow JL, Sharpe SR, Tilden G, Wyatt P, Oczkowicz S, Riegler M. Transmission modes and efficiency of iflavirus and cripavirus in Queensland fruit fly, Bactrocera tryoni. J Invertebr Pathol 2023; 197:107874. [PMID: 36574813 DOI: 10.1016/j.jip.2022.107874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 12/13/2022] [Accepted: 12/21/2022] [Indexed: 12/25/2022]
Abstract
Infections of insects with insect-specific RNA viruses are common and can affect host fitness and health. Previously, persistent RNA virus infections were detected in tephritid fruit flies, including the Queensland fruit fly (Bactrocera tryoni), Australia's most significant horticultural pest. Their transmission modes and efficiency are unclear yet may influence virus epidemiology in field and laboratory populations. Using standard RT-PCR and RT-qPCR we detected iflavirus, cripavirus and sigmavirus in five laboratory populations recently established with field-collected B.tryoni. Virus absence in some individuals suggested that virus transmission is incomplete. Random virus segregation in an isofemale experiment resulted in the establishment of isofemale lines with and without iflavirus and cripavirus. In infected lines, viral loads normalised against host gene transcripts were variable, but did not differ between pupae and adults. Iflavirus and cripavirus were transmitted horizontally, with viruses detected (including at low viral loads) in many previously uninfected individuals after four days, and in most after 12 days cohabitation with infected flies. Iflavirus, but not cripavirus, was transmitted vertically, and surface-sterilised embryos contained high loads. Furthermore, high iflavirus loads in individual females resulted in high loads in their offspring. We demonstrated that viruses are highly prevalent in laboratory populations and that it is possible to establish and maintain uninfected fly lines for the assessment of virus transmission and host effects. This is important for pest management strategies such as the sterile insect technique which requires the mass-rearing of flies, as their fitness and performance may be affected by covert virus infections.
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Affiliation(s)
- Jennifer L Morrow
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia.
| | - Stephen R Sharpe
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Geraldine Tilden
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Pauline Wyatt
- Department of Agriculture and Fisheries Queensland, Ecosciences Precinct, 41 Boggo Road, Dutton Park, QLD 4102, Australia
| | - Sybilla Oczkowicz
- Department of Agriculture and Fisheries Queensland, Redden Street Research Facility, 21-23 Redden Street, Portsmith, QLD 4870, Australia
| | - Markus Riegler
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia.
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Sollazzo G, Gouvi G, Nikolouli K, Martinez EIC, Schetelig MF, Bourtzis K. Temperature Sensitivity of Wild-Type, Mutant and Genetic Sexing Strains of Ceratitis capitata. INSECTS 2022; 13:943. [PMID: 36292891 PMCID: PMC9604331 DOI: 10.3390/insects13100943] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 10/10/2022] [Accepted: 10/12/2022] [Indexed: 06/16/2023]
Abstract
Area-wide integrated pest management (AW-IPM) programmes with a sterile insect technique component (SIT) are used to control populations of insect pests worldwide, including the Mediterranean fruit fly, Ceratitis capitata. SIT consists of the mass rearing, radiation-induced sterilization, handling, and release of sterile insects over the target area. Although SIT can be performed by using both sterile males and females, male-only releases significantly increase the efficiency and cost-effectiveness of SIT applications. Male-only releases can be achieved by using genetic sexing strains (GSS). The medfly VIENNA 8 GSS is based on two selectable markers, the white pupae (wp) gene, and the temperature-sensitive lethal (tsl) genes. The latter allows the elimination of females by exposing embryos to elevated temperatures. This study assessed the temperature sensitivity of twenty-seven medfly strains through a TSLT. Our results indicated significant differences among the strains regarding egg hatching as well as pupal and adult recovery rates due to the presence or absence of the tsl mutation and/or the genetic background of the strains. Our findings are discussed in the context of SIT applications, the importance of the tsl gene for developing genetic sexing strains, and climate change.
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Affiliation(s)
- Germano Sollazzo
- Insect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria
- Department of Insect Biotechnology in Plant Protection, Institute for Insect Biotechnology, Justus-Liebig-University Gießen, Winchesterstr. 2, 35394 Gießen, Germany
| | - Georgia Gouvi
- Insect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria
- Department of Environmental Engineering, University of Patras, 2 Seferi Str., 30100 Agrinio, Greece
| | - Katerina Nikolouli
- Insect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria
| | - Elena I. Cancio Martinez
- Insect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria
| | - Marc F. Schetelig
- Department of Insect Biotechnology in Plant Protection, Institute for Insect Biotechnology, Justus-Liebig-University Gießen, Winchesterstr. 2, 35394 Gießen, Germany
| | - Kostas Bourtzis
- Insect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria
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Choo A, Fung E, Nguyen TNM, Okada A, Crisp P. CRISPR/Cas9 Mutagenesis to Generate Novel Traits in Bactrocera tryoni for Sterile Insect Technique. Methods Mol Biol 2022; 2495:151-171. [PMID: 35696033 DOI: 10.1007/978-1-0716-2301-5_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Sterile Insect Technique (SIT) is a biocontrol strategy that has been widely utilized to suppress or eradicate outbreak populations of insect pests such as tephritid fruit flies. As SIT is highly favored due to it being species-specific and environmentally friendly, there are constant efforts to improve the efficiency and efficacy of this method in particular at low pest densities; one of which is the use of genetically enhanced strains. Development of these desirable strains has been facilitated by the emergence of the CRISPR/Cas genome-editing technology that enables the rapid and precise genomic modification of non-model organisms. Here, we describe the manual microinjection of CRISPR/Cas9 reagents into tephritid pest Bactrocera tryoni (Queensland fruit fly) embryos to introduce ideal traits as well as the molecular methods used to detect successful mutagenesis.
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Affiliation(s)
- Amanda Choo
- School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia.
| | - Elisabeth Fung
- South Australian Research and Development Institute, Adelaide, SA, Australia
| | - Thu N M Nguyen
- University of Melbourne, Bio21 Institute, School of BioSciences, Melbourne, VIC, Australia
| | - Anzu Okada
- School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia
| | - Peter Crisp
- South Australian Research and Development Institute, Adelaide, SA, Australia
- School of Agricultural, Food and Wine, University of Adelaide, Adelaide, SA, Australia
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Nikolouli K, Augustinos AA, Stathopoulou P, Asimakis E, Mintzas A, Bourtzis K, Tsiamis G. Genetic structure and symbiotic profile of worldwide natural populations of the Mediterranean fruit fly, Ceratitis capitata. BMC Genet 2020; 21:128. [PMID: 33339507 PMCID: PMC7747371 DOI: 10.1186/s12863-020-00946-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The Mediterranean fruit fly, Ceratitis capitata, is a cosmopolitan agricultural pest of worldwide economic importance and a model for the development of the Sterile Insect Technique (SIT) for fruit flies of the Tephritidae family (Diptera). SIT relies on the effective mating of laboratory-reared strains and natural populations, and therefore requires an efficient mass-rearing system that will allow for the production of high-quality males. Adaptation of wild flies to an artificial laboratory environment can be accompanied by negative effects on several life history traits through changes in their genetic diversity and symbiotic communities. Such changes may lead to reduced biological quality and mating competitiveness in respect to the wild populations. Profiling wild populations can help understand, and maybe reverse, deleterious effects accompanying laboratory domestication thus providing insects that can efficiently and effectively support SIT application. RESULTS In the present study, we analyzed both the genetic structure and gut symbiotic communities of natural medfly populations of worldwide distribution, including Europe, Africa, Australia, and the Americas. The genetic structure of 408 individuals from 15 distinct populations was analyzed with a set of commonly used microsatellite markers. The symbiotic communities of a subset of 265 individuals from 11 populations were analyzed using the 16S rRNA gene-based amplicon sequencing of single individuals (adults). Genetic differentiation was detected among geographically distant populations while adults originated from neighboring areas were genetically closer. Alpha and beta diversity of bacterial communities pointed to an overall reduced symbiotic diversity and the influence of the geographic location on the bacterial profile. CONCLUSIONS Our analysis revealed differences both in the genetic profile and the structure of gut symbiotic communities of medfly natural populations. The genetic analysis expanded our knowledge to populations not analyzed before and our results were in accordance with the existing scenarios regarding this species expansion and colonization pathways. At the same time, the bacterial communities from different natural medfly populations have been characterized, thus broadening our knowledge on the microbiota of the species across its range. Genetic and symbiotic differences between natural and laboratory populations must be considered when designing AW-IPM approaches with a SIT component, since they may impact mating compatibility and mating competitiveness of the laboratory-reared males. In parallel, enrichment from wild populations and/or symbiotic supplementation could increase rearing productivity, biological quality, and mating competitiveness of SIT-important laboratory strains.
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Affiliation(s)
- Katerina Nikolouli
- Insect Pest Control Laboratory, Joint FAO/IAEA Programme of Nuclear Techniques in Food and Agriculture, A-1400, Vienna, Austria
| | - Antonios A Augustinos
- Insect Pest Control Laboratory, Joint FAO/IAEA Programme of Nuclear Techniques in Food and Agriculture, A-1400, Vienna, Austria.
- Department of Biology, University of Patras, 26504, Patras, Greece.
- Present address: Department of Plant Protection, Hellenic Agricultural Organization-Demeter, Institute of Industrial and Forage Crops, 26442, Patras, Greece.
| | | | - Elias Asimakis
- Department of Environmental Engineering, University of Patras, 30100, Agrinio, Greece
| | | | - Kostas Bourtzis
- Insect Pest Control Laboratory, Joint FAO/IAEA Programme of Nuclear Techniques in Food and Agriculture, A-1400, Vienna, Austria
| | - George Tsiamis
- Department of Environmental Engineering, University of Patras, 30100, Agrinio, Greece.
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Climate stress resistance in male Queensland fruit fly varies among populations of diverse geographic origins and changes during domestication. BMC Genet 2020; 21:135. [PMID: 33339509 PMCID: PMC7747409 DOI: 10.1186/s12863-020-00935-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Background The highly polyphagous Queensland fruit fly (Bactrocera tryoni Froggatt) expanded its range substantially during the twentieth century and is now the most economically important insect pest of Australian horticulture, prompting intensive efforts to develop a Sterile Insect Technique (SIT) control program. Using a “common garden” approach, we have screened for natural genetic variation in key environmental fitness traits among populations from across the geographic range of this species and monitored changes in those traits induced during domestication. Results Significant variation was detected between the populations for heat, desiccation and starvation resistance and wing length (as a measure of body size). Desiccation resistance was correlated with both starvation resistance and wing length. Bioassay data for three resampled populations indicate that much of the variation in desiccation resistance reflects persistent, inherited differences among the populations. No latitudinal cline was detected for any of the traits and only weak correlations were found with climatic variables for heat resistance and wing length. All three stress resistance phenotypes and wing length changed significantly in certain populations with ongoing domestication but there was also a strong population by domestication interaction effect for each trait. Conclusions Ecotypic variation in heat, starvation and desiccation resistance was detected in Australian Qfly populations, and these stress resistances diminished rapidly during domestication. Our results indicate a need to select source populations for SIT strains which have relatively high climatic stress resistance and to minimise loss of that resistance during domestication.
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The transformer-2 and fruitless characterisation with developmental expression profiles of sex-determining genes in Bactrocera dorsalis and B. correcta. Sci Rep 2020; 10:17938. [PMID: 33087807 PMCID: PMC7578103 DOI: 10.1038/s41598-020-74856-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 10/07/2020] [Indexed: 12/12/2022] Open
Abstract
Sex determination in tephritid fruit flies involves a signaling cascade of alternatively spliced genes. The Transformer (TRA) and Transformer-2 (TRA-2) complex establishes an autoregulatory loop switching sex-specific splicing of tra pre-mRNA in females. The TRA/TRA-2 complex also regulates the sex-specific splicing of downstream effector genes, doublesex (dsx) and fruitless (fru). In Ceratitis capitata, a Maleness-on the-Y (MoY) gene modulates sex-specifically spliced Cctra pre-mRNA and results in the breakdown of the Cctra autoregulatory loop in males. In this study, the tra-2 and fru genes were characterised in two key pests, Bactrocera dorsalis and B. correcta. The tra-2 genes showed high degrees of conservation among tephritids. The complex gene organisation for each of Bdfru and Bcfru were identified. There are sex-specific and non sex-specific transcripts generated by alternative promoters as found in Drosophila melanogaster and other insects. RNAi knockdown of Bdtra transcripts showed that BdTRA controls the sex-specific splicing of Bddsx and Bdfru pre-mRNAs. Developmental expression analysis shows that multiple splice variants of Bdtra and Bctra RNAs are present before and during cellular blastoderm formation and that the mature sex-specific variants become fixed later in embryogenesis. Furthermore, the BddsxM splice variants are found in early embryos at the beginning of gastulation, but BdfruM does not appear until the larval stage. We proposed that the zygotic tra loop is initiated in both female and male embryos before becoming automatised or abolished by MoY, respectively.
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Choo A, Nguyen TNM, Ward CM, Chen IY, Sved J, Shearman D, Gilchrist AS, Crisp P, Baxter SW. Identification of Y-chromosome scaffolds of the Queensland fruit fly reveals a duplicated gyf gene paralogue common to many Bactrocera pest species. INSECT MOLECULAR BIOLOGY 2019; 28:873-886. [PMID: 31150140 DOI: 10.1111/imb.12602] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 05/22/2019] [Accepted: 05/28/2019] [Indexed: 06/09/2023]
Abstract
Bactrocera tryoni (Queensland fruit fly) are polyphagous horticultural pests of eastern Australia. Heterogametic males contain a sex-determining Y-chromosome thought to be gene poor and repetitive. Here, we report 39 Y-chromosome scaffolds (~700 kb) from B. tryoni identified using genotype-by-sequencing data and whole-genome resequencing. Male diagnostic PCR assays validated eight Y-scaffolds, and one (Btry4096) contained a novel gene with five exons that encode a predicted 575 amino acid protein. The Y-gene, referred to as typo-gyf, is a truncated Y-chromosome paralogue of X-chromosome gene gyf (1773 aa). The Y-chromosome contained ~41 copies of typo-gyf, and expression occurred in male flies and embryos. Analysis of 13 tephritid transcriptomes confirmed typo-gyf expression in six additional Bactrocera species, including Bactrocera latifrons, Bactrocera dorsalis and Bactrocera zonata. Molecular dating estimated typo-gyf evolved within the past 8.02 million years (95% highest posterior density 10.56-5.52 million years), after the split with Bactrocera oleae. Phylogenetic analysis also highlighted complex evolutionary histories among several Bactrocera species, as discordant nuclear (116 genes) and mitochondrial (13 genes) topologies were observed. B. tryoni Y-sequences may provide useful sites for future transgene insertions, and typo-gyf could act as a Y-chromosome diagnostic marker for many Bactrocera species, although its function is unknown.
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Affiliation(s)
- Amanda Choo
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Thu N M Nguyen
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Christopher M Ward
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Isabel Y Chen
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
- South Australian Research and Development Institute, Adelaide, South Australia, Australia
| | - John Sved
- Evolution and Ecology Research Centre, University of New South Wales, Sydney, New South Wales, Australia
| | - Deborah Shearman
- Evolution and Ecology Research Centre, University of New South Wales, Sydney, New South Wales, Australia
| | - Anthony S Gilchrist
- Evolution and Ecology Research Centre, University of New South Wales, Sydney, New South Wales, Australia
| | - Peter Crisp
- South Australian Research and Development Institute, Adelaide, South Australia, Australia
| | - Simon W Baxter
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
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Zhao S, Xing Z, Liu Z, Liu Y, Liu X, Chen Z, Li J, Yan R. Efficient somatic and germline genome engineering of Bactrocera dorsalis by the CRISPR/Cas9 system. PEST MANAGEMENT SCIENCE 2019; 75:1921-1932. [PMID: 30565410 DOI: 10.1002/ps.5305] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Revised: 10/31/2018] [Accepted: 12/13/2018] [Indexed: 06/09/2023]
Abstract
BACKGROUND Bactrocera dorsalis (Hendel), a very destructive insect pest of many fruits and vegetables, is widespread in many Asian countries. To facilitate control of this pest, it is essential to investigate its genetics and gene function using targeted gene disruption. RESULTS Here, we describe successful targeted mutagenesis of the white and transformer genes in B. dorsalis through use of the clustered regularly interspaced short palindromic repeats/CRISPR-associated 9 (CRISPR/Cas9) system. Co-injection of the white sgRNA and Cas9 mRNA into B. dorsalis embryos caused eye color change, and the white mutations in the germline were heritable. CRISPR-mediated knockout of the sex determination gene transformer (tra) in B. dorsalis resulted in a male-biased sex ratio and adult flies with abnormal outer and interior reproductive organs. Small indels and substitutions were induced by CRIRPR for both genes. CONCLUSION Our data demonstrate that somatic and germline genome engineering of the pest B. dorsalis can be performed efficiently using the CRISPR/Cas9 system, opening the door to the use of the CRISPR-mediated method for functional annotations of genes in B. dorsalis and for its population control using, for example, such as gene drive. © 2018 Society of Chemical Industry.
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Affiliation(s)
- Santao Zhao
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Zengzhu Xing
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Zhonggeng Liu
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Yanhui Liu
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Xiangrui Liu
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Zhe Chen
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Jiahui Li
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
| | - Rihui Yan
- College of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, China
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Xie S, Lan Y, Sun C, Shao Y. Insect microbial symbionts as a novel source for biotechnology. World J Microbiol Biotechnol 2019; 35:25. [PMID: 30666424 DOI: 10.1007/s11274-019-2599-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Accepted: 01/16/2019] [Indexed: 12/14/2022]
Abstract
Insecta is the most diverse and largest class of animals on Earth, appearing together with the emergence of the first terrestrial ecosystem. Owing to this great diversity and long-term coexistence, an amazing variety of symbiotic microorganisms have adapted specifically to insects as hosts. Insect symbionts not only participate in many relationships with the hosts but also represent a novel resource for biotechnological applications. The exploitation of mutualistic symbiosis represents a promising area to search for bioactive compounds and new enzymes for potential clinical, industrial or environmental applications. Moreover, the manipulation of parasitic symbiosis has particular potential to solve practical problems for the control of agricultural pests and disease vectors. Although the study of microbial symbionts has been impaired by the unculturability of most symbionts, the rapidly growing catalogue of microbial genomes and the application of modern genetic techniques provide an alternative approach to using these microbes. This minireview presents examples of microbial symbionts isolated from insects for emerging biotechnological use and illuminates new ways for discovering microorganisms of applied value from a particularly promising source.
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Affiliation(s)
- Sen Xie
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China
| | - Yahua Lan
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China
| | - Chao Sun
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, People's Republic of China
| | - Yongqi Shao
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China. .,Key Laboratory for Molecular Animal Nutrition, Ministry of Education, Beijing, People's Republic of China.
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Nikolouli K, Colinet H, Renault D, Enriquez T, Mouton L, Gibert P, Sassu F, Cáceres C, Stauffer C, Pereira R, Bourtzis K. Sterile insect technique and Wolbachia symbiosis as potential tools for the control of the invasive species Drosophila suzukii. JOURNAL OF PEST SCIENCE 2017; 91:489-503. [PMID: 29568248 PMCID: PMC5847143 DOI: 10.1007/s10340-017-0944-y] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Revised: 11/30/2017] [Accepted: 12/02/2017] [Indexed: 05/27/2023]
Abstract
Drosophila suzukii, a vinegar fly originated from Southeast Asia, has recently invaded western countries, and it has been recognized as an important threat of a wide variety of several commercial soft fruits. This review summarizes the current information about the biology and dispersal of D. suzukii and discusses the current status and prospects of control methods for the management of this pest. We highlight current knowledge and ongoing research on innovative environmental-friendly control methods with emphasis on the sterile insect technique (SIT) and the incompatible insect technique (IIT). SIT has been successfully used for the containment, suppression or even eradication of populations of insect pests. IIT has been proposed as a stand-alone tool or in conjunction with SIT for insect pest control. The principles of SIT and IIT are reviewed, and the potential value of each approach in the management of D. suzukii is analyzed. We thoroughly address the challenges of SIT and IIT, and we propose the use of SIT as a component of an area-wide integrated pest management approach to suppress D. suzukii populations. As a contingency plan, we suggest a promising alternative avenue through the combination of these two techniques, SIT/IIT, which has been developed and is currently being tested in open-field trials against Aedes mosquito populations. All the potential limiting factors that may render these methods ineffective, as well as the requirements that need to be fulfilled before their application, are discussed.
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Affiliation(s)
- Katerina Nikolouli
- Department of Forest and Soil Sciences, Boku, University of Natural Resources and Life Sciences, Vienna, Austria
- Insect Pest Control Section, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Wagramerstrasse 5, PO Box 100, 1400 Vienna, Austria
| | - Hervé Colinet
- UMR ECOBIO CNRS 6553, Université de Rennes, 1, 263 AVE du Général Leclerc, 35042 Rennes Cedex, France
| | - David Renault
- UMR ECOBIO CNRS 6553, Université de Rennes, 1, 263 AVE du Général Leclerc, 35042 Rennes Cedex, France
- Institut Universitaire de France, 1 rue Descartes, 75231 Paris, Cedex 05, France
| | - Thomas Enriquez
- UMR ECOBIO CNRS 6553, Université de Rennes, 1, 263 AVE du Général Leclerc, 35042 Rennes Cedex, France
| | - Laurence Mouton
- Laboratoire de Biométrie et Biologie Evolutive, Univ. Lyon, Université Claude Bernard Lyon 1, CNRS, 69100 Villeurbanne, France
| | - Patricia Gibert
- Laboratoire de Biométrie et Biologie Evolutive, Univ. Lyon, Université Claude Bernard Lyon 1, CNRS, 69100 Villeurbanne, France
| | - Fabiana Sassu
- Department of Forest and Soil Sciences, Boku, University of Natural Resources and Life Sciences, Vienna, Austria
- Insect Pest Control Section, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Wagramerstrasse 5, PO Box 100, 1400 Vienna, Austria
| | - Carlos Cáceres
- Insect Pest Control Section, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Wagramerstrasse 5, PO Box 100, 1400 Vienna, Austria
| | - Christian Stauffer
- Department of Forest and Soil Sciences, Boku, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Rui Pereira
- Insect Pest Control Section, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Wagramerstrasse 5, PO Box 100, 1400 Vienna, Austria
| | - Kostas Bourtzis
- Insect Pest Control Section, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Wagramerstrasse 5, PO Box 100, 1400 Vienna, Austria
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Luo Y, Zhao S, Li J, Li P, Yan R. Isolation and Molecular Characterization of the Transformer Gene From Bactrocera cucurbitae (Diptera: Tephritidae). JOURNAL OF INSECT SCIENCE (ONLINE) 2017; 17:3755290. [PMID: 28931159 PMCID: PMC5469387 DOI: 10.1093/jisesa/iex031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Indexed: 05/13/2023]
Abstract
transformer (tra) is a switch gene of sex determination in many insects, particularly in Dipterans. However, the sex determination pathway in Bactrocera cucurbitae (Coquillett), a very destructive pest on earth, remains largely uncharacterized. In this study, we have isolated and characterized one female-specific and two male-specific transcripts of the tra gene (Bcutra) of B. cucurbitae. The genomic structure of Bcutra has been determined and the presence of multiple conserved Transformer (TRA)/TRA-2 binding sites in Bcutra has been found. BcuTRA is highly conservative with its homologues in other tephritid fruit flies. Gene expression analysis of Bcutra at different developmental stages demonstrates that the female transcript of Bcutra appears earlier than the male counterparts, indicating that the maternal TRA is inherited in eggs and might play a role in the regulation of TRA expression. The conservation of protein sequence and sex-specific splicing of Bcutra and its expression patterns during development suggest that Bcutra is probably the master gene of sex determination of B. cucurbitae. Isolation of Bcutra will facilitate the development of a genetic sexing strain for its biological control.
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Affiliation(s)
- Ya Luo
- Department of Plant Protection, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan Province, China (; ; ; ; )Corresponding author, e-mail: , and
| | - Santao Zhao
- Department of Plant Protection, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan Province, China (; ; ; ; )Corresponding author, e-mail: , and
| | - Jiahui Li
- Department of Plant Protection, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan Province, China (; ; ; ; )Corresponding author, e-mail: , and
| | - Peizheng Li
- Department of Plant Protection, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan Province, China (; ; ; ; )Corresponding author, e-mail: , and
| | - Rihui Yan
- Department of Plant Protection, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan Province, China (; ; ; ; )Corresponding author, e-mail: , and
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, Hainan University, Haikou, Hainan Province, China ()
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Characterization of irritans mariner-like elements in the olive fruit fly Bactrocera oleae (Diptera: Tephritidae): evolutionary implications. Naturwissenschaften 2016; 103:64. [DOI: 10.1007/s00114-016-1391-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Revised: 06/22/2016] [Accepted: 06/27/2016] [Indexed: 11/25/2022]
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The role of the transformer gene in sex determination and reproduction in the tephritid fruit fly, Bactrocera dorsalis (Hendel). Genetica 2016; 143:717-27. [PMID: 26481008 DOI: 10.1007/s10709-015-9869-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Transformer (tra) is a switch gene in the somatic sex-determination hierarchy that regulates sexual dimorphism based on RNA splicing in many insects. In tephritids, a Y-linked male determining gene (M) controls sex in the sex-determination pathway. Here, homologues of Drosophila tra and transformer-2 (tra-2) genes were isolated and characterized in Bactrocera dorsalis (Hendel), one of the most destructive agricultural insect pests in many Asian countries. Two male-specific and one female-specific isoforms of B. dorsalis transformer (Bdtra) were identified. The presence of multiple TRA/TRA-2 binding sites in Bdtra suggests that the TRA/TRA-2 proteins are splicing regulators promoting and maintaining, epigenetically, female sex determination by a tra positive feedback loop in XX individuals during development. The expression patterns of female-specific Bdtra transcripts during early embryogenesis shows that a peak appears at 15 h after egg laying. Using dsRNA to knock-down Bdtra expression in the embryo and adult stages, we showed that sexual formation is determined early in the embryo stage and that parental RNAi does not lead to the production of all male progeny as in Tribolium castaneum. RNAi results from adult abdominal dsRNA injections show that Bdtra has a positive influence on female yolk protein gene (Bdyp1) expression and fecundity.
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Morrow JL, Frommer M, Shearman DCA, Riegler M. The Microbiome of Field-Caught and Laboratory-Adapted Australian Tephritid Fruit Fly Species with Different Host Plant Use and Specialisation. MICROBIAL ECOLOGY 2015; 70:498-508. [PMID: 25666536 DOI: 10.1007/s00248-015-0571-1] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2014] [Accepted: 01/21/2015] [Indexed: 05/12/2023]
Abstract
Tephritid fruit fly species display a diversity of host plant specialisation on a scale from monophagy to polyphagy. Furthermore, while some species prefer ripening fruit, a few are restricted to damaged or rotting fruit. Such a diversity of host plant use may be reflected in the microbial symbiont diversity of tephritids and their grade of dependency on their microbiomes. Here, we investigated the microbiome of six tephritid species from three genera, including species that are polyphagous pests (Bactrocera tryoni, Bactrocera neohumeralis, Bactrocera jarvisi, Ceratitis capitata) and a monophagous specialist (Bactrocera cacuminata). These were compared with the microbiome of a non-pestiferous but polyphagous tephritid species that is restricted to damaged or rotting fruit (Dirioxa pornia). The bacterial community associated with whole fruit flies was analysed by 16S ribosomal DNA (rDNA) amplicon pyrosequencing to detect potential drivers of taxonomic composition. Overall, the dominant bacterial families were Enterobacteriaceae and Acetobacteraceae (both Proteobacteria), and Streptococcaceae and Enterococcaceae (both Firmicutes). Comparisons across species and genera found different microbial composition in the three tephritid genera, but limited consistent differentiation between Bactrocera species. Within Bactrocera species, differentiation of microbial composition seemed to be influenced by the environment, possibly including their diets; beyond this, tephritid species identity or ecology also had an effect. The microbiome of D. pornia was most distinct from the other five species, which may be due to its ecologically different niche of rotting or damaged fruit, as opposed to ripening fruit favoured by the other species. Our study is the first amplicon pyrosequencing study to compare the microbiomes of tephritid species and thus delivers important information about the turnover of microbial diversity within and between fruit fly species and their potential application in pest management strategies.
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Affiliation(s)
- J L Morrow
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia,
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Bourtzis K, Hendrichs J. Preface: development and evaluation of improved strains of insect pests for sterile insect technique (SIT) applications. BMC Genet 2014; 15 Suppl 2:I1. [PMID: 25472848 PMCID: PMC4255763 DOI: 10.1186/1471-2156-15-s2-i1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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