• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4839153)   Today's Articles (10951)
For: Fahmi NA, Ahmed KT, Chang JW, Nassereddeen H, Fan D, Yong J, Zhang W. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. BMC Bioinformatics 2022;23:396. [PMID: 36171568 PMCID: PMC9520800 DOI: 10.1186/s12859-022-04939-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 09/16/2022] [Indexed: 11/26/2022]  Open
Number Cited by Other Article(s)
1
Tian Q, Zou Q, Jia L. Benchmarking of methods that identify alternative polyadenylation events in single-/multiple-polyadenylation site genes. NAR Genom Bioinform 2025;7:lqaf056. [PMID: 40371010 PMCID: PMC12076406 DOI: 10.1093/nargab/lqaf056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Revised: 04/23/2025] [Accepted: 05/01/2025] [Indexed: 05/16/2025]  Open
2
Sun J, Kim JY, Jun S, Park M, de Jong E, Chang JW, Cheng S, Fan D, Chen Y, Griffin TJ, Lee JH, You HJ, Zhang W, Yong J. Dichotomous intronic polyadenylation profiles reveal multifaceted gene functions in the pan-cancer transcriptome. Exp Mol Med 2024;56:2145-2161. [PMID: 39349823 PMCID: PMC11541570 DOI: 10.1038/s12276-024-01289-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/20/2024] [Accepted: 06/24/2024] [Indexed: 11/08/2024]  Open
3
Bi X, Ye W, Cheng X, Yang N, Wu X. vizAPA: visualizing dynamics of alternative polyadenylation from bulk and single-cell data. Bioinformatics 2024;40:btae099. [PMID: 38485700 PMCID: PMC10950478 DOI: 10.1093/bioinformatics/btae099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 01/11/2024] [Indexed: 03/21/2024]  Open
4
Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M. Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. RNA (NEW YORK, N.Y.) 2023;29:1839-1855. [PMID: 37816550 PMCID: PMC10653393 DOI: 10.1261/rna.079849.123] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 09/21/2023] [Indexed: 10/12/2023]
5
Ye W, Lian Q, Ye C, Wu X. A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq. GENOMICS, PROTEOMICS & BIOINFORMATICS 2022:S1672-0229(22)00121-8. [PMID: 36167284 PMCID: PMC10372920 DOI: 10.1016/j.gpb.2022.09.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 08/17/2022] [Accepted: 09/19/2022] [Indexed: 05/08/2023]
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA