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For: Wu CS, Ma ZY, Zheng GD, Zou SM, Zhang XJ, Zhang YA. Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution. BMC Genomics 2022;23:271. [PMID: 35392810 PMCID: PMC8988418 DOI: 10.1186/s12864-022-08503-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 03/23/2022] [Indexed: 12/18/2022]  Open
Number Cited by Other Article(s)
1
Shi L, Ng JKW, Xiong Q, Ao KFK, Shin SK, Law CTY, Mu W, Liu GM, Rao S, Tsui SKW. Comparative genomic analysis of immune-related genes and chemosensory receptors provides insights into the evolution and adaptation of four major domesticated Asian carps. BMC Genomics 2025;26:529. [PMID: 40419972 DOI: 10.1186/s12864-025-11719-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 05/15/2025] [Indexed: 05/28/2025]  Open
2
Zhang K, Chen J, He H, Duan B, You C, Hu Z, Cai L, Xiang X, Liang R. EccDNA Analysis Provides Novel Insights Into the Molecular Mechanism of Firmness of Fish Fillet. Food Sci Nutr 2025;13:e70268. [PMID: 40365041 PMCID: PMC12070031 DOI: 10.1002/fsn3.70268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2024] [Revised: 03/24/2025] [Accepted: 04/29/2025] [Indexed: 05/15/2025]  Open
3
Yang T, Zhao L, Su C, Guo X, Peng X, Yang S, Yao G. Chromosome-scale assembly of the Xenocypris davidi using PacBio HiFi reads and Hi-C technologies. Sci Data 2025;12:452. [PMID: 40102422 PMCID: PMC11920407 DOI: 10.1038/s41597-025-04800-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Accepted: 03/11/2025] [Indexed: 03/20/2025]  Open
4
Oriowo TO, Chrysostomakis I, Martin S, Kukowka S, Brown T, Winkler S, Myers EW, Böhne A, Stange M. A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity. Gigascience 2025;14:giae116. [PMID: 39877992 PMCID: PMC11775470 DOI: 10.1093/gigascience/giae116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2024] [Accepted: 12/06/2024] [Indexed: 01/31/2025]  Open
5
Xiao K, Jia X, Qiang W, Chang L, Liu W, Zhang D. Tryptophan supplements in high-carbohydrate diets by improving insulin response and glucose transport through PI3K-AKT-GLUT2 pathways in blunt snout bream (Megalobrama amblycephala). J Nutr Biochem 2024;134:109715. [PMID: 39127308 DOI: 10.1016/j.jnutbio.2024.109715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 07/20/2024] [Accepted: 07/29/2024] [Indexed: 08/12/2024]
6
Zhu X, Luo Y, Ma B, Shen Q, Zheng X, Xu M, Sheng Q, Wu J. Chromosome-Level Assembly and Annotation of the Endangered Red-Wing Fish (Distoechodon macrophthalmus). Genes (Basel) 2024;15:1536. [PMID: 39766803 PMCID: PMC11675437 DOI: 10.3390/genes15121536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 11/26/2024] [Accepted: 11/26/2024] [Indexed: 01/11/2025]  Open
7
Liu H, Cui T, Liu H, Zhang J, Luo Q, Fei S, Chen K, Zhu X, Zhu C, Li B, Fang L, Zhao J, Ou M. Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing. Sci Data 2024;11:1249. [PMID: 39562583 PMCID: PMC11577095 DOI: 10.1038/s41597-024-04075-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 11/04/2024] [Indexed: 11/21/2024]  Open
8
Rasal KD, Kumar PV, Risha S, Asgolkar P, Harshavarthini M, Acharya A, Shinde S, Dhere S, Rasal A, Sonwane A, Brahmane M, Sundaray JK, Nagpure N. Genetic improvement and genomic resources of important cyprinid species: status and future perspectives for sustainable production. Front Genet 2024;15:1398084. [PMID: 39364006 PMCID: PMC11446788 DOI: 10.3389/fgene.2024.1398084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 09/02/2024] [Indexed: 10/05/2024]  Open
9
Liu Y, Zhu W, Zhang Y, Zhang J, Lv M, Su J. Anti-infective immune functions of type IV interferon in grass carp ( Ctenopharyngodon idella): A novel antibacterial and antiviral interferon in lower vertebrates. Zool Res 2024;45:972-982. [PMID: 39085753 PMCID: PMC11491785 DOI: 10.24272/j.issn.2095-8137.2024.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 05/07/2024] [Indexed: 08/02/2024]  Open
10
Wu L, Gu S, Wen P, Wu L, Li L, Guo S, Ding S. Chromosome-level genome assembly and annotation of the Spinibarbus caldwelli. Sci Data 2024;11:933. [PMID: 39198473 PMCID: PMC11358287 DOI: 10.1038/s41597-024-03796-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 08/19/2024] [Indexed: 09/01/2024]  Open
11
Wang C, Xiong S, Hu S, Yang L, Huang Y, Chen H, Xu B, Xiao T, Liu Q. Genome-wide identification of Gα family in grass carp (Ctenopharyngodon idella) and reproductive regulation functional characteristics of Cignaq. BMC Genomics 2024;25:800. [PMID: 39182029 PMCID: PMC11344465 DOI: 10.1186/s12864-024-10717-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 08/16/2024] [Indexed: 08/27/2024]  Open
12
Deng WJ, Li QQ, Shuai HN, Wu RX, Niu SF, Wang QH, Miao BB. Whole-Genome Sequencing Analyses Reveal the Evolution Mechanisms of Typical Biological Features of Decapterus maruadsi. Animals (Basel) 2024;14:1202. [PMID: 38672351 PMCID: PMC11047736 DOI: 10.3390/ani14081202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 04/11/2024] [Accepted: 04/15/2024] [Indexed: 04/28/2024]  Open
13
Yang H, Xiao T, Deng Y, Ding C, Zhang M, Li J, Lv Z. JunD functions as a transcription factor of IL-10 to regulate bacterial infectious inflammation in grass carp (Ctenopharyngodon idella). Int J Biol Macromol 2024;258:129045. [PMID: 38159700 DOI: 10.1016/j.ijbiomac.2023.129045] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 12/04/2023] [Accepted: 12/23/2023] [Indexed: 01/03/2024]
14
Lv M, Zhang J, Wang W, Jiang R, Su J. Re-identification and characterization of grass carp Ctenopharyngodon idella TLR20. FISH AND SHELLFISH IMMUNOLOGY REPORTS 2023;5:100119. [PMID: 37841419 PMCID: PMC10568090 DOI: 10.1016/j.fsirep.2023.100119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 10/02/2023] [Accepted: 10/04/2023] [Indexed: 10/17/2023]  Open
15
Jiang R, Zhu W, Liao Z, Yang C, Su J. TLR7 neo-functionalizes to sense dsRNA and trigger antiviral and antibacterial immunity in non-tetrapod vertebrates. iScience 2023;26:108315. [PMID: 38025781 PMCID: PMC10679900 DOI: 10.1016/j.isci.2023.108315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 09/30/2023] [Accepted: 10/20/2023] [Indexed: 12/01/2023]  Open
16
Chaung K, Baharav TZ, Henderson G, Zheludev IN, Wang PL, Salzman J. SPLASH: A statistical, reference-free genomic algorithm unifies biological discovery. Cell 2023;186:5440-5456.e26. [PMID: 38065078 PMCID: PMC10861363 DOI: 10.1016/j.cell.2023.10.028] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 08/31/2023] [Accepted: 10/26/2023] [Indexed: 12/18/2023]
17
Zhang R, Duan Q, Luo Q, Deng L. PacBio Full-Length Transcriptome of a Tetraploid Sinocyclocheilus multipunctatus Provides Insights into the Evolution of Cavefish. Animals (Basel) 2023;13:3399. [PMID: 37958154 PMCID: PMC10648740 DOI: 10.3390/ani13213399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 10/21/2023] [Accepted: 10/31/2023] [Indexed: 11/15/2023]  Open
18
Guo T, Feng S, Zhang Y, Li W, Qin Y, Li Z. Chromosome-level genome assembly of Bactrocera correcta provides insights into its adaptation and invasion mechanisms. Genomics 2023;115:110736. [PMID: 39491176 DOI: 10.1016/j.ygeno.2023.110736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 10/14/2023] [Accepted: 10/26/2023] [Indexed: 11/05/2024]
19
Pan YR, Wu CS, Zhong YQ, Zhang YA, Zhang XJ. An Atlas of Grass Carp IgM+ B Cells in Homeostasis and Bacterial Infection Helps to Reveal the Unique Heterogeneity of B Cells in Early Vertebrates. JOURNAL OF IMMUNOLOGY (BALTIMORE, MD. : 1950) 2023;211:964-980. [PMID: 37578390 DOI: 10.4049/jimmunol.2300052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 07/06/2023] [Indexed: 08/15/2023]
20
Chaung K, Baharav TZ, Henderson G, Zheludev IN, Wang PL, Salzman J. [WITHDRAWN] SPLASH: a statistical, reference-free genomic algorithm unifies biological discovery. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.17.549408. [PMID: 37503014 PMCID: PMC10370119 DOI: 10.1101/2023.07.17.549408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
21
Li F, Li PF, Hao XD. Circular RNAs in ferroptosis: regulation mechanism and potential clinical application in disease. Front Pharmacol 2023;14:1173040. [PMID: 37332354 PMCID: PMC10272566 DOI: 10.3389/fphar.2023.1173040] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 05/25/2023] [Indexed: 06/20/2023]  Open
22
An efficient, fast and inexpensive method for genomic DNA extraction of fish tissue. Mol Biol Rep 2023;50:3963-3968. [PMID: 36826682 DOI: 10.1007/s11033-023-08317-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 01/31/2023] [Indexed: 02/25/2023]
23
Liu K, Xie N, Wang Y, Liu X. Contribution bias of parental genomes to the hybrid lineages of black Amur bream and topmouth culter revealed by low-coverage whole-genome sequencing. Gene 2023;852:147058. [PMID: 36423776 DOI: 10.1016/j.gene.2022.147058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 11/11/2022] [Accepted: 11/16/2022] [Indexed: 11/23/2022]
24
Liu X, Hu YZ, Pan YR, Liu J, Jiang YB, Zhang YA, Zhang XJ. Comparative study on antibacterial characteristics of the multiple liver expressed antimicrobial peptides (LEAPs) in teleost fish. Front Immunol 2023;14:1128138. [PMID: 36891317 PMCID: PMC9986249 DOI: 10.3389/fimmu.2023.1128138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 02/02/2023] [Indexed: 02/22/2023]  Open
25
Liu L, Liu Q, Gao T. Genome-wide survey reveals the phylogenomic relationships of Chirolophisjaponicus Herzenstein, 1890 (Stichaeidae, Perciformes). Zookeys 2022;1129:55-72. [PMID: 36761850 PMCID: PMC9836534 DOI: 10.3897/zookeys.1129.91543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 10/06/2022] [Indexed: 11/13/2022]  Open
26
Chromosome-Level Assembly of Male Opsariichthys bidens Genome Provides Insights into the Regulation of the GnRH Signaling Pathway and Genome Evolution. BIOLOGY 2022;11:biology11101500. [PMID: 36290404 PMCID: PMC9598921 DOI: 10.3390/biology11101500] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 10/11/2022] [Accepted: 10/11/2022] [Indexed: 11/17/2022]
27
Animal board invited review: Widespread adoption of genetic technologies is key to sustainable expansion of global aquaculture. Animal 2022;16:100642. [PMID: 36183431 PMCID: PMC9553672 DOI: 10.1016/j.animal.2022.100642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 08/31/2022] [Accepted: 09/02/2022] [Indexed: 11/23/2022]  Open
28
Lu TZ, Liu X, Wu CS, Ma ZY, Wang Y, Zhang YA, Zhang XJ. Molecular and Functional Analyses of the Primordial Costimulatory Molecule CD80/86 and Its Receptors CD28 and CD152 (CTLA-4) in a Teleost Fish. Front Immunol 2022;13:885005. [PMID: 35784316 PMCID: PMC9245511 DOI: 10.3389/fimmu.2022.885005] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Accepted: 05/19/2022] [Indexed: 11/13/2022]  Open
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