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Angelakis N, Goldsworthy SD, Connell SD, Durante LM. A novel method for identifying fine-scale bottom-use in a benthic-foraging pinniped. MOVEMENT ECOLOGY 2023; 11:34. [PMID: 37296462 PMCID: PMC10257308 DOI: 10.1186/s40462-023-00386-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 04/16/2023] [Indexed: 06/12/2023]
Abstract
BACKGROUND For diving, marine predators, accelerometer and magnetometer data provides critical information on sub-surface foraging behaviours that cannot be identified from location or time-depth data. By measuring head movement and body orientation, accelerometers and magnetometers can help identify broad shifts in foraging movements, fine-scale habitat use and energy expenditure of terrestrial and marine species. Here, we use accelerometer and magnetometer data from tagged Australian sea lions and provide a new method to identify key benthic foraging areas. As Australian sea lions are listed as endangered by the IUCN and Australian legislation, identifying key areas for the species is vital to support targeted management of populations. METHODS Firstly, tri-axial magnetometer and accelerometer data from adult female Australian sea lions is used in conjunction with GPS and dive data to dead-reckon their three-dimensional foraging paths. We then isolate all benthic phases from their foraging trips and calculate a range of dive metrics to characterise their bottom usage. Finally, k-means cluster analysis is used to identify core benthic areas utilised by sea lions. Backwards stepwise regressions are then iteratively performed to identify the most parsimonious model for describing bottom usage and its included predictor variables. RESULTS Our results show distinct spatial partitioning in benthic habitat-use by Australian sea lions. This method has also identified individual differences in benthic habitat-use. Here, the application of high-resolution magnetometer/accelerometer data has helped reveal the tortuous foraging movements Australian sea lions use to exploit key benthic marine habitats and features. CONCLUSIONS This study has illustrated how magnetometer and accelerometer data can provide a fine-scale description of the underwater movement of diving species, beyond GPS and depth data alone, For endangered species like Australian sea lions, management of populations must be spatially targeted. Here, this method demonstrates a fine-scale analysis of benthic habitat-use which can help identify key areas for both marine and terrestrial species. Future integration of this method with concurrent habitat and prey data would further augment its power as a tool for understanding the foraging behaviours of species.
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Affiliation(s)
- Nathan Angelakis
- University of Adelaide, North Terrace, Adelaide, SA, 5000, Australia.
| | - Simon D Goldsworthy
- University of Adelaide, North Terrace, Adelaide, SA, 5000, Australia
- South Australian Research and Development Institute (SARDI) (Aquatic Sciences), 2 Hamra Avenue, West Beach, SA, 5024, Australia
| | - Sean D Connell
- University of Adelaide, North Terrace, Adelaide, SA, 5000, Australia
| | - Leonardo M Durante
- South Australian Research and Development Institute (SARDI) (Aquatic Sciences), 2 Hamra Avenue, West Beach, SA, 5024, Australia
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Redpath SHA, Marks NJ, Menzies FD, O'Hagan MJH, Wilson RP, Smith S, Magowan EA, McClune DW, Collins SF, McCormick CM, Scantlebury DM. Impact of test, vaccinate or remove protocol on home ranges and nightly movements of badgers a medium density population. Sci Rep 2023; 13:2592. [PMID: 36788237 PMCID: PMC9929337 DOI: 10.1038/s41598-023-28620-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 01/20/2023] [Indexed: 02/16/2023] Open
Abstract
In the British Isles, the European badger (Meles meles) is thought to be the primary wildlife reservoir of bovine tuberculosis (bTB), an endemic disease in cattle. Test, vaccinate or remove ('TVR') of bTB test-positive badgers, has been suggested to be a potentially useful protocol to reduce bTB incidence in cattle. However, the practice of removing or culling badgers is controversial both for ethical reasons and because there is no consistent observed effect on bTB levels in cattle. While removing badgers reduces population density, it may also result in disruption of their social behaviour, increase their ranging, and lead to greater intra- and inter-species bTB transmission. This effect has been recorded in high badger density areas, such as in southwest England. However, little is known about how TVR affects the behaviour and movement of badgers within a medium density population, such as those that occur in Northern Ireland (NI), which the current study aimed to examine. During 2014-2017, badger ranging behaviours were examined prior to and during a TVR protocol in NI. Nightly distances travelled by 38 individuals were determined using Global Positioning System (GPS) measurements of animal tracks and GPS-enhanced dead-reckoned tracks. The latter was calculated using GPS, tri-axial accelerometer and tri-axial magnetometer data loggers attached to animals. Home range and core home range size were measured using 95% and 50% autocorrelated kernel density estimates, respectively, based on location fixes. TVR was not associated with measured increases in either distances travelled per night (mean = 3.31 ± 2.64 km) or home range size (95% mean = 1.56 ± 0.62 km2, 50% mean = 0.39 ± 0.62 km2) over the four years of study. However, following trapping, mean distances travelled per night increased by up to 44% eight days post capture. Findings differ from those observed in higher density badger populations in England, in which badger ranging increased following culling. Whilst we did not assess behaviours of individual badgers, possible reasons why no differences in home range size were observed include higher inherent 'social fluidity' in Irish populations whereby movements are less restricted by habitat saturation and/or that the numbers removed did not reach a threshold that might induce increases in ranging behaviour. Nevertheless, short-term behavioural disruption from trapping was observed, which led to significant increases in the movements of individual animals within their home range. Whether or not TVR may alter badger behaviours remains to be seen, but it would be better to utilise solutions such as oral vaccination of badgers and/or cattle as well as increased biosecurity to limit bTB transmission, which may be less likely to cause interference and thereby reduce the likelihood of bTB transmission.
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Affiliation(s)
- Sophie H A Redpath
- School of Biological Sciences, Queens' University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
- Veterinary Sciences Division, Agri-Food and Biosciences Institute, Belfast, BT4 3SD, Northern Ireland
| | - Nikki J Marks
- School of Biological Sciences, Queens' University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Fraser D Menzies
- Department of Agriculture, Environment and Rural Affairs, Veterinary Epidemiology Unit, Belfast, BT4 3SB, Northern Ireland
| | - Maria J H O'Hagan
- Department of Agriculture, Environment and Rural Affairs, Veterinary Epidemiology Unit, Belfast, BT4 3SB, Northern Ireland
| | - Rory P Wilson
- Department of Biological Sciences, Swansea University, Singleton Park, Swansea, SA2 8PP, Wales
| | - Sinéad Smith
- School of Biological Sciences, Queens' University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Elizabeth A Magowan
- School of Biological Sciences, Queens' University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - David W McClune
- School of Biological Sciences, Queens' University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Shane F Collins
- Department of Agriculture, Environment and Rural Affairs, Veterinary Epidemiology Unit, Belfast, BT4 3SB, Northern Ireland
| | - Carl M McCormick
- Veterinary Sciences Division, Agri-Food and Biosciences Institute, Belfast, BT4 3SD, Northern Ireland
| | - D Michael Scantlebury
- School of Biological Sciences, Queens' University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland.
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Yu H, Klaassen CAJ, Deng J, Leen T, Li G, Klaassen M. Increasingly detailed insights in animal behaviours using continuous on-board processing of accelerometer data. MOVEMENT ECOLOGY 2022; 10:42. [PMID: 36280879 PMCID: PMC9594961 DOI: 10.1186/s40462-022-00341-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 10/02/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND Studies of animal behaviour, ecology and physiology are continuously benefitting from progressing biologging techniques, including the collection of accelerometer data to infer animal behaviours and energy expenditure. In one of the most recent technological advances in this space, on-board processing of raw accelerometer data into animal behaviours proves highly energy-, weight- and cost-efficient allowing for continuous behavioural data collection in addition to regular positional data in a wide range of animal tracking studies. METHODS We implemented this latest development in collecting continuous behaviour records from 6 Pacific Black Ducks Anas superciliosa to evaluate some of this novel technique's potential advantages over tracking studies lacking behavioural data or recording accelerometer data intermittently only. We (i) compared the discrepancy of time-activity budgets between continuous records and behaviours sampled with different intervals, (ii) compared total daily distance flown using hourly GPS fixes with and without additional behavioural data and (iii) explored how behaviour records can provide additional insights for animal home range studies. RESULTS Using a total of 690 days of behaviour records across six individual ducks distinguishing eight different behaviours, we illustrated the improvement that is obtained in time-activity budget accuracy if continuous rather than interval-sampled accelerometer data is used. Notably, for rare behaviours such as flying and running, error ratios > 1 were common when sampling intervals exceeded 10 min. Using 72 days of hourly GPS fixes in combination with continuous behaviour records over the same period in one individual duck, we showed behaviour-based daily distance estimation is significantly higher (up to 540%) than the distance calculated from hourly sampled GPS fixes. Also, with the same 72 days of data for one individual duck, we showed how this individual used specific sites within its entire home range to satisfy specific needs (e.g. roosting and foraging). CONCLUSION We showed that by using trackers allowing for continuous recording of animal behaviour, substantial improvements in the estimation of time-activity budgets and daily traveling distances can be made. With integrating behaviour into home-range estimation we also highlight that this novel tracking technique may not only improve estimations but also open new avenues in animal behaviour research, importantly improving our knowledge of an animal's state while it is roaming the landscape.
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Affiliation(s)
- Hui Yu
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia.
- Druid Technology Co., Ltd, Chengdu, Sichuan, China.
- Experimental Zoology Group, Wageningen University, Wageningen, the Netherlands.
| | - Chris A J Klaassen
- Korteweg-de Vries Institute for Mathematics, University of Amsterdam, Amsterdam, the Netherlands
| | - Jian Deng
- Druid Technology Co., Ltd, Chengdu, Sichuan, China
| | - Trent Leen
- Geelong Field & Game, Balliang East, VIC, Australia
- Wetlands Environmental Taskforce, Seymour, VIC, Australia
| | - Guozheng Li
- Druid Technology Co., Ltd, Chengdu, Sichuan, China
| | - Marcel Klaassen
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia
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Peeva S, Raichev E, Georgiev D, Yankov Y, Tsunoda H, Kaneko Y. European badger's mating activities associated with moon phase. J ETHOL 2022. [DOI: 10.1007/s10164-022-00762-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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