The forecast of COVID-19 spread risk at the county level

Novel cost-effective method for forecasting COVID-19 and hospital occupancy using deep learning

The emergence of the COVID-19 pandemic in 2019 and its rapid global spread put healthcare systems around the world to the test. This crisis created an unprecedented level of stress in hospitals, exacerbating the already complex task of healthcare management. As a result, it led to a tragic increase in mortality rates and highlighted the urgent need for advanced predictive tools to support decision-making. To address these critical challenges, this research aims to develop and implement a predictive system capable of predicting pandemic evolution with accuracy (in terms of Mean Absolute error (MAE), Root Mean Square Error (RMSE), R2, and Mean Absolute Percentage Error (MAPE)) and low computational and economic cost. It uses a set of interconnected Long Short Term-memory (LSTM) with double bidirectional LSTM (BiLSTM) layers together with a novel preprocessing based on future time windows. This model accurately predicts COVID-19 cases and hospital occupancy over long periods of time using only 40% of the set to train. This results in a long-term prediction where each day we can query the cases for the next three days with very little data. The data utilized in this analysis were obtained from the "Hospital Insular" in Gran Canaria, Spain. These data describe the spread of the coronavirus disease (COVID-19) from its initial emergence in 2020 until March 29, 2022. The results show an improvement in MAE (< 161), RMSE (< 405), and MAPE (> 0.20) compared to other studies with similar conditions. This would be a powerful tool for the healthcare system, providing valuable information to decision-makers, allowing them to anticipate and strategize for possible scenarios, ultimately improving public health outcomes and optimizing the allocation of healthcare and economic resources.

Reproduction number projection for the COVID-19 pandemic

The recently derived Hybrid-Incidence Susceptible-Transmissible-Removed (HI-STR) prototype is a deterministic compartment model for epidemics and an alternative to the Susceptible-Infected-Removed (SIR) model. The HI-STR predicts that pathogen transmission depends on host population characteristics including population size, population density and social behaviour common within that population.

The HI-STR prototype is applied to the ancestral Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV2) to show that the original estimates of the Coronavirus Disease 2019 (COVID-19) basic reproduction number $\mathcal{R}_{0}$ R 0 for the United Kingdom (UK) could have been projected onto the individual states of the United States of America (USA) prior to being detected in the USA.

The Imperial College London (ICL) group’s estimate of $\mathcal{R}_{0}$ R 0 for the UK is projected onto each USA state. The difference between these projections and the ICL’s estimates for USA states is either not statistically significant on the paired Student t-test or not epidemiologically significant.

The SARS-CoV2 Delta variant’s $\mathcal{R}_{0}$ R 0 is also projected from the UK to the USA to prove that projection can be applied to a Variant of Concern (VOC). Projection provides both a localised baseline for evaluating the implementation of an intervention policy and a mechanism for anticipating the impact of a VOC before local manifestation.

Forecasting the Spread of COVID-19 Using Deep Learning and Big Data Analytics Methods

To contain the spread of the COVID-19 pandemic, there is a need for cutting-edge approaches that make use of existing technology capabilities. Forecasting its spread in a single or multiple countries ahead of time is a common strategy in most research. There is, however, a need for all-inclusive studies that capitalize on the entire regions on the African continent. This study closes this gap by conducting a wide-ranging investigation and analysis to forecast COVID-19 cases and identify the most critical countries in terms of the COVID-19 pandemic in all five major African regions. The proposed approach leveraged both statistical and deep learning models that included the autoregressive integrated moving average (ARIMA) model with a seasonal perspective, the long-term memory (LSTM), and Prophet models. In this approach, the forecasting problem was considered as a univariate time series problem using confirmed cumulative COVID-19 cases. The model performance was evaluated using seven performance metrics that included the mean-squared error, root mean-square error, mean absolute percentage error, symmetric mean absolute percentage error, peak signal-to-noise ratio, normalized root mean-square error, and the R2 score. The best-performing model was selected and used to make future predictions for the next 61 days. In this study, the long short-term memory model performed the best. Mali, Angola, Egypt, Somalia, and Gabon from the Western, Southern, Northern, Eastern, and Central African regions, with an expected increase of 22.77%, 18.97%, 11.83%, 10.72%, and 2.81%, respectively, were the most vulnerable countries with the highest expected increase in the number of cumulative positive cases.

The effect of changing COVID-19 restrictions on the transmission rate in a veterinary clinic

With the declaration of the COVID-19 pandemic by the World Health Organization on March 11, 2020, the University of Tennessee College of Veterinary Medicine (UTCVM), like other institutions, restructured their services to reduce the potential spread of the COVID-19 virus while simultaneously providing critical and essential veterinary services. A mathematical model was developed to predict the change in the level of possible COVID-19 infections due to the increased number of potential contacts within the UTCVM hospital. A system of ordinary differential equations with different compartments for UTCVM individuals and the Knox county population was formulated to show the dynamics of transmission and the number of confirmed cases. Key transmission rates in the model were estimated using COVID-19 case data from the surrounding county and UTCVM personnel. Simulations from this model show the increasing number of COVID-19 cases among UTCVM personnel as the number of daily clients and the number of veterinary staff in the clinic are increased. We also investigate how changes within the Knox county community impact the UTCVM hospital. These scenarios show the importance of understanding the effects of re-opening scenarios in veterinary teaching hospitals.

Machine learning approach for predicting production delays: a quarry company case study

Predictive maintenance employing machine learning techniques and big data analytics is a benefit to the industrial business in the Industry 4.0 era. Companies, on the other hand, have difficulties as they move from reactive to predictive manufacturing processes. The purpose of this paper is to demonstrate how data analytics and machine learning approaches may be utilized to predict production delays in a quarry firm as a case study. The dataset contains production records for six months, with a total of 20 columns for each production record for two machines. Cross Industry Standard Process for Data Mining approach is followed to build the machine learning models. Five predictive models were created using machine learning algorithms such as Decision Tree, Neural Network, Random Forest, Nave Bayes and Logistic Regression. The results show that Multilayer Perceptron Neural Network and Logistic Regression outperform other techniques and accurately predicts production delays with a F-measure score of 0.973. The quarry company's improved decision-making reducing potential production line delays demonstrates the value of this study.

Suburban Road Networks to Explore COVID-19 Vulnerability and Severity

The Delta variant of COVID-19 has been found to be extremely difficult to contain worldwide. The complex dynamics of human mobility and the variable intensity of local outbreaks make measuring the factors of COVID-19 transmission a challenge. The inter-suburb road connection details provide a reliable proxy of the moving options for people between suburbs for a given region. By using such data from Greater Sydney, Australia, this study explored the impact of suburban road networks on two COVID-19-related outcomes measures. The first measure is COVID-19 vulnerability, which gives a low score to a more vulnerable suburb. A suburb is more vulnerable if it has the first COVID-19 case earlier and vice versa. The second measure is COVID-19 severity, which is proportionate to the number of COVID-19-positive cases for a suburb. To analyze the suburban road network, we considered four centrality measures (degree, closeness, betweenness and eigenvector) and core-periphery structure. We found that the degree centrality measure of the suburban road network was a strong and statistically significant predictor for both COVID-19 vulnerability and severity. Closeness centrality and eigenvector centrality were also statistically significant predictors for COVID-19 vulnerability and severity, respectively. The findings of this study could provide practical insights to stakeholders and policymakers to develop timely strategies and policies to prevent and contain any highly infectious pandemics, including the Delta variant of COVID-19.

Pandemic strategies with computational and structural biology against COVID-19: A retrospective

The emergence of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), which is the etiologic agent of the coronavirus disease 2019 (COVID-19) pandemic, has dominated all aspects of life since of 2020. Research studies on the virus and exploration of therapeutic and preventive strategies has been moving at rapid rates to control the pandemic. In the field of bioinformatics or computational and structural biology, recent research strategies have used multiple disciplines to compile large datasets to uncover statistical correlations and significance, visualize and model proteins, perform molecular dynamics simulations, and employ the help of artificial intelligence and machine learning to harness computational processing power to further the research on COVID-19, including drug screening, drug design, vaccine development, prognosis prediction, and outbreak prediction. These recent developments should help us better understand the viral disease and develop the much-needed therapies and strategies for the management of COVID-19.