From formic acid to single-cell protein: genome-scale revealing the metabolic network of Paracoccus communis MA5

Screening Key Genes Related to Nitrogen Use Efficiency in Cucumber Through Weighted Gene Co-Expression Network Analysis

Cucumber (Cucumis sativus L.) is a crucial vegetable crop, requiring significant nitrogen fertilizer inputs. However, excessive nitrogen application not only impairs growth but also poses severe environmental risks. Thus, enhancing nitrogen use efficiency (NUE) in cucumber is imperative. For the identification of genes associated with NUE in cucumber, roots of high NUE and low NUE lines were analyzed under high nitrogen conditions. Using transcriptome sequencing through WGCNA, a total of 15,180 genes were categorized into 35 co-expression modules, with 5 modules being highly correlated with NUE. Based on differential expression within the five modules and the results of GO and KEGG enrichment analyses, 25 genes were identified as potentially related to NUE. Among these, CsaV4_1G002492 (GLR22), CsaV4_2G003460 (GLR35), CsaV4_3G000307 (NRT1.1), and CsaV4_7G001709 (UPS2) were homologous to genes in Arabidopsis known to directly participate in NUE related process. These four genes were chosen as key genes for further analysis. qRT-PCR analysis revealed that CsaV4_3G000307 and CsaV4_7G001709 were more active during the early stages of the high nitrogen treatment in the high NUE line. Conversely, CsaV4_1G002492 and CsaV4_2G003460 were more active in the low NUE line. Using transcriptomic analysis, a frameshift INDEL mutation was observed in CsaV4_3G000307 in the low NUE line, which impacted the compactness of the protein structure, potentially altering its function. Analysis of protein interactions of these four key genes predicted some potential interaction networks. This research offers critical insights into the genetic factors influencing NUE in cucumber, presenting potential targets for genetic modification or breeding programs.

From sustainable feedstocks to microbial foods

Climate change-induced alterations in weather patterns, such as frequent and severe heatwaves, cold waves, droughts, floods, heavy rain and storms, are reducing crop yields and agricultural productivity. At the same time, greenhouse gases arising from food production and supply account for almost 30% of anthropogenic emissions. This vicious circle is producing a global food crisis. Sustainable food resources and production systems are needed now, and microbial foods are one possible solution. In this Perspective, we highlight the most promising technologies, and carbon and energy sources, for microbial food production.

Ammonia/ammonium removal/recovery from wastewaters using bioelectrochemical systems (BES): A review

This review updates the current research efforts on using BES to recover NH₃/NH₄⁺, highlighting the novel configurations and introducing the working principles and the applications of microbial fuel cell (MFC), microbial electrolysis cell (MEC), microbial desalination cell (MDC), and microbial electrosynthesis cell (MESC) for NH₃/NH₄⁺ removal/recovery. However, commonly studied BES processes for NH₃/NH₄⁺ removal/recovery are energy intensive with external aeration needed for NH₃ stripping being the largest energy input. In such a process bipolar membranes used for yielding a local alkaline pool recovering NH₃ is not cost-effective. This gives a chance to microbial electrosynthesis which turned out to be a potential alternative option to approach circular bioeconomy. Furtherly, the reactor volume and NH₃/NH₄⁺ removal/recovery efficiency has a weakly positive correlation, indicating that there might be other factors controlling the reactor performance that are yet to be investigated.