1
|
Cao L, Guo W, Yang S, Ahmad AA, Dong Y, Gong C, Wang S, Yang X, Cheng Z, Yan Z, Wang W. Survey of gut microbial biogeography and their functional niche in the grow-finishing swine of ordinary feeding. Front Microbiol 2025; 16:1530553. [PMID: 40124893 PMCID: PMC11925874 DOI: 10.3389/fmicb.2025.1530553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2024] [Accepted: 02/17/2025] [Indexed: 03/25/2025] Open
Abstract
Background Swine represent one of the most economically significant livestock worldwide, and their intestinal microbial communities are crucial for maintaining physiological development and regulating host metabolism. While extensive research has focused on the fecal microbiota of swine, investigations into microbial communities across different intestinal segments remain limited. Objective This study aims to elucidate the intestinal microbiota of swine by analyzing luminal contents from different intestinal segments, including the duodenum, jejunum, ileum, cecum, and colon. Methods We employed 16S rRNA sequencing to explore the diversity and structure of gut microbial biogeography, microbial functional niches, and their associated pathways. Results Our findings reveal significantly lower microbial richness and diversity in the small intestine (duodenum, jejunum, and ileum) compared to the large intestine (cecum and colon) (p < 0.05). At the phylum level, Firmicutes, Actinobacteria, Proteobacteria, and Bacteroidetes were the dominant phyla, collectively accounting for over 90% of the total sequences. In the small intestine, Proteobacteria (4.76-34.2%), Actinobacteria, and Fusobacteriota were more abundant, whereas in the large intestine, Firmicutes (89.8-90.4%) was predominated. At the genus level, Fusobacterium, Corynebacterium, Rothia, Bradyrhizobium, and Brevundimonas were predominant in duodenum. Romboutsia, Clostridium_sensu_stricto_1, Terrisporobacter, and Jeotgalicoccus demonstrated greater abundances in the jejunum and ileum. Oscillospiraceae_UCG-005 in the cecum and Christensenellaceae_R-7_group in the colon were more abundant with 16.4 and 20.2% relative abundances, respectively. The specialists detected from the duodenum to the colon were all the predominant genera in each intestinal segment with relatively higher relative abundance. For instance, Romboutsia (3.06-36.1%), Clostridium_sensu_stricto_1 (5.31-18.6%), and Terrisporobacter (0.849-5.72%) were dominant genera and specialists in the small intestine, associated with enriched pathways of Amino acid metabolism and Lipid metabolism. Conversely, Oscillospiraceae_UCG-005 (16.4%, 4.06%) and Christensenellaceae_R-7_group (5.44%, 20.2%) are predominant genera and specialists within the large intestine, linked to pathways involved in Glycan biosynthesis and metabolism pathway, as well as the Biosynthesis of other secondary metabolites. Conclusion These highlight the importance of genus specialists compared to genus generalists. The findings provide essential data for assessing the role of the intestinal microbiome in maintaining and enhancing swine health and productivity, offering fundamental guidance for further exploration of host-microbe interaction mechanisms and regulatory pathways.
Collapse
Affiliation(s)
- Lili Cao
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
- Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province, College of Animal Science, Guizhou University, Guiyang, China
| | - Wei Guo
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
| | - Shiyu Yang
- College of Resources and Environmental Engineering, Guizhou University, Guiyang, China
- Guizhou Yuhong Biotechnology Co., Ltd., Guiyang, China
| | - Anum Ali Ahmad
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, United Kingdom
| | - Yuntao Dong
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
| | - Cen Gong
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
| | - Shuoqi Wang
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
| | - Xuemin Yang
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
| | - Zhentao Cheng
- Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province, College of Animal Science, Guizhou University, Guiyang, China
| | - Zhihong Yan
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
- Institute of New Rural Development, Guizhou University, Guiyang, China
| | - Weiwei Wang
- Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Science, Guizhou University, Guiyang, China
| |
Collapse
|
2
|
Zhou H, Cheng H, Wang Y, Duan D, Han J, Zhou S, Xin W, Li X. Development of a Feed Conversion Ratio Prediction Model for Yorkshire Boars Using Cumulative Feed Intake. Animals (Basel) 2025; 15:507. [PMID: 40002989 PMCID: PMC11851840 DOI: 10.3390/ani15040507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2025] [Revised: 02/06/2025] [Accepted: 02/09/2025] [Indexed: 02/27/2025] Open
Abstract
Feed conversion ratio (FCR) is a key indicator of pig productivity, but its measurement is labor-intensive and time-consuming. This study aimed to construct a predictive model for cumulative feeding intake (CFI), which could help estimate FCR more efficiently and reduce the time and effort needed for measurements. This study included a total of 987 Yorkshire boars raised in specific pathogen-free environments, with feeding and growth data collected using automatic feeders. The segmented R package and Bayesian ridge regression (BRR) were used to build a predictive model for CFI. The results showed that the optimal body weight range for predicting FCR was 80-110 kg. The BRR model achieved 80% accuracy for CFI prediction, and FCR calculated from predicted CFI showed 81.4% similarity to the corrected FCR. The results clearly demonstrate that even with a limited training dataset, the BRR model has good predictive potential for FCR. The findings of this study could reduce the selection pressure on FCR traits, decrease production costs, and shorten measurement periods, ultimately benefiting the swine industry significantly.
Collapse
Affiliation(s)
- Hao Zhou
- College of Animal Sciences and Technology, Henan Agricultural University, Zhengzhou 450046, China; (H.Z.); (H.C.); (Y.W.)
| | - Haoshi Cheng
- College of Animal Sciences and Technology, Henan Agricultural University, Zhengzhou 450046, China; (H.Z.); (H.C.); (Y.W.)
| | - Yuyang Wang
- College of Animal Sciences and Technology, Henan Agricultural University, Zhengzhou 450046, China; (H.Z.); (H.C.); (Y.W.)
| | - Dongdong Duan
- Sanya Institute, Hainan Academy of Agricultural, Sanya 572025, China; (D.D.); (J.H.); (S.Z.)
| | - Jinyi Han
- Sanya Institute, Hainan Academy of Agricultural, Sanya 572025, China; (D.D.); (J.H.); (S.Z.)
| | - Shenping Zhou
- Sanya Institute, Hainan Academy of Agricultural, Sanya 572025, China; (D.D.); (J.H.); (S.Z.)
| | - Wenshui Xin
- Sanya Institute, Hainan Academy of Agricultural, Sanya 572025, China; (D.D.); (J.H.); (S.Z.)
| | - Xinjian Li
- College of Animal Sciences and Technology, Henan Agricultural University, Zhengzhou 450046, China; (H.Z.); (H.C.); (Y.W.)
- Sanya Institute, Hainan Academy of Agricultural, Sanya 572025, China; (D.D.); (J.H.); (S.Z.)
| |
Collapse
|
3
|
Production of Green Biorefinery Protein Concentrate Derived from Perennial Ryegrass as an Alternative Feed for Pigs. CLEAN TECHNOLOGIES 2021. [DOI: 10.3390/cleantechnol3030039] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Perennial rye grass is a widely used forage species in Ireland, on which the ruminant sector of agriculture is heavily dependent. While this species of grass is the primary source of fodder for cows, it is also abundant in plant protein, which could form a potential alternative ingredient in monogastric animal feed using a green biorefinery approach. In this study, perennial rye grass was processed using a novel biorefining process to extract value added products including protein as a potential replacement for soybean meal in monogastric feeds. Feed trials were conducted on a commercial farm with 55 weaner pigs for 31 days until slaughter. The diets comprised a control and a trial diet which integrated the green biorefinery protein concentrate. The effects of the new diet were determined by measuring the daily feed intake (DFI), average weight gain (AWG) and feed conversion ratio (FCR). Amino acid profiles of grass protein concentrate and soybean meal were comparable, with the latter having a slightly higher amount of total protein content, lysine and cysteine. The DFI and ADW indicated that the treatment diet was superior to the control. DFI for the treatment diet (1.512 kg/d) was 8% higher than the control diet (1.400 kg/d) by the end of the trial. Additionally, the ADW for the treatment diet was 6.44% higher than that achieved in the control sample. Meanwhile, FCR calculations indicated that the treatment diet is just as efficient as the conventional diet. Overall, the results of the study indicate positive potential for perennial ryegrass-derived green biorefinery protein concentrate as an alternative protein source for pig feed formulations in Ireland.
Collapse
|
4
|
Liu X, Cai Z, Yuan Z. Environmental burdens of small-scale intensive pig production in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 770:144720. [PMID: 33517013 DOI: 10.1016/j.scitotenv.2020.144720] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Revised: 12/18/2020] [Accepted: 12/25/2020] [Indexed: 06/12/2023]
Abstract
Small-scale intensive pig production systems account for over a half of the total number of pig farms in China, of which concerns have been raised relating to their environmental performances. This study explores the cradle-to-slaughterhouse gate environmental impacts using life cycle assessment (LCA) approach, with the purpose of identifying major hotspots to formulate mitigation strategies. The functional unit is defined as 1000 kg of pig carcass weight. Consistent with previous research, feed production makes up the largest contribution (56-95%) to all the six selected impact categories based on the ReCiPe 2016 framework. Of the feed ingredients, maize is identified as the principal hotspot mainly due to the large consumption as well as the heat usage in grain steaming to enhance availability of starch digestion. The results also indicate that changes of feed consumption and composition along the lifetime growth reveal a much higher contribution from the grower-finisher stage. Marked differences are observed in terms of greenhouse gas emissions from pig production between developing (including China) and developed countries. With lots of studies showing feasibilities, improvements suggested for small-scale intensive pig production systems include the optimization of feed formulas, the introduction of new feed technologies, and the upgrade of manure management system. Our results provide valuable and practical insight for the Chinese pig supply chain to mitigate environmental burdens and achieve future environmental sustainability.
Collapse
Affiliation(s)
- Xin Liu
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Zican Cai
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Zengwei Yuan
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, China.
| |
Collapse
|
5
|
Petri FAM, Sonalio K, de Souza Almeida HM, Mechler-Dreibi ML, Galdeano JVB, Mathias LA, de Oliveira LG. Cross-sectional study of Leptospira spp. in commercial pig farms in the state of Goiás, Brazil. Trop Anim Health Prod 2020; 53:13. [PMID: 33211190 DOI: 10.1007/s11250-020-02457-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Accepted: 10/25/2020] [Indexed: 10/22/2022]
Abstract
Leptospirosis is an infectious, contagious disease highly important to the world pig industry, which causes reproductive loss in breeding herds. Endemic infections in a herd may produce little evidence of clinical disease despite resulting in economic losses. However, some epidemiological features of leptospirosis in midwestern Brazil, such as risk factors and prevalence of the disease, remain unclear. Therefore, this study focused on assessing the prevalence of the Leptospira spp. in intensive pig herds and associating its risk factors. A set of 900 blood samples, equally distributed between nursery, growing, and finishing pigs of 30 intensive farrow-to-finish farms, were analyzed using the microagglutination test (MAT), in order to detect anti-Leptospira spp. antibodies for 24 different Leptospira spp. serovars. An occurrence of 4.67% (55/342) seropositive samples were detected in fattening pigs. The variables associated with the disease occurrence were animals per square meter at fattening (OR 0.006, CI 95% 0.004-0.42, p = 0.0105) and pen division between growing and fattening pigs (OR 3.56, CI 95% 0.563-22.541, p = 0.185). Thus, the variables semi-hollow floor in the maternity (OR 16.66; CI 95%: 2.17-128.2 and p = 0.006) and animals per trough at fattening (OR: 0.08, CI 95% 0.009-0.87 and p = 0.025), observed in this study, highlight the importance of the fattening phase in the epidemiology of the disease, bringing information on risk factors involved in the occurrence and dissemination of leptospirosis in intensive pig herds.
Collapse
Affiliation(s)
- Fernando Antônio Moreira Petri
- Department of Veterinary Clinic and Surgery, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil
| | - Karina Sonalio
- Department of Veterinary Clinic and Surgery, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil
| | - Henrique Meiroz de Souza Almeida
- Department of Veterinary Clinic and Surgery, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil
| | - Marina Lopes Mechler-Dreibi
- Department of Veterinary Clinic and Surgery, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil
| | | | - Luís Antônio Mathias
- Department of Veterinary Clinic and Surgery, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil
| | - Luís Guilherme de Oliveira
- Department of Veterinary Clinic and Surgery, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.
| |
Collapse
|
6
|
Gaillard C, Brossard L, Dourmad JY. Improvement of feed and nutrient efficiency in pig production through precision feeding. Anim Feed Sci Technol 2020. [DOI: 10.1016/j.anifeedsci.2020.114611] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
7
|
Carcass gain per kg feed intake: developing a stakeholder-driven benchmark for comparing grow-finishing pig performance. Animal 2020; 14:2609-2618. [PMID: 32654668 DOI: 10.1017/s1751731120001664] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Feed conversion ratio (FCR) in grow-finishing pigs is one of the most important determinants of pig farm profitability and production efficiency. In its simplest form, FCR represents the amount of feed used per unit weight gain of the pig. Yet, this approach entails various limitations hampering its practical applicability such as availability of accurate data and large variation in ways to adapt FCR values for different starting and end weight as well as mortality rates. Various stakeholders are using their own formulas to determine FCR creating a 'definition nonconformity' when comparing FCRs among farms. This study aimed to optimize the calculation of FCR through the use of participatory qualitative research. A multidisciplinary research group of 9 persons (animal scientists, veterinarians and agricultural economists) and a consulting group of 31 stakeholders (representing the Flemish primary sector, feed industry, pharma, genetic companies, large retailers, academia and policy institutions) were involved. The decision problem analysis started with a literature review, followed by 25 in-depth interviews and their analyses (NVivo 11™). This led to an additional literature review and the formation of focus (expert) groups that helped to formulate preliminary FCR formulas. Revision rounds between the research team and the stakeholders further fine-tuned the formulas with the final result being two distinct complimentary formulas that are fit for purpose. Both refer to carcass gain per kg feed intake (plain (CGF) and standardized (CGFstandardized)). The first formula (CGF), namely ${{{\it{number \, delivered \, pigs}} \times {\it{average \, warm \, carcass \, weight}} - {\it{number \, stocked \, piglets}} \times {\it{average \, piglet \, weight}} \times {\it{piglet \, carcass \, yield}}} \over {{\it{feed \, consumption}}}}$ is an objective representation of the animals' performance. The second formula (CGFstandardized) was developed for farm benchmarking, incorporating a seven-step standardization process that corrects for mortality and 'standardizes' for a fixed (yet fictive) live weight trajectory of 25 to 115 kg. This second formula allows to compare farms (or batches of fattening pigs) with different weight trajectories and different mortality rates. A webtool was designed to ease this standardization process (https://varkensloket.be/tools/CGF).
Collapse
|
8
|
Towards Understanding Non-Infectious Growth-Rate Retardation in Growing Pigs. Proteomes 2019; 7:proteomes7030031. [PMID: 31514421 PMCID: PMC6789591 DOI: 10.3390/proteomes7030031] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 08/30/2019] [Accepted: 09/10/2019] [Indexed: 01/03/2023] Open
Abstract
For growth-rate retardation in commercial growing pigs suffering from non-infectious diseases, no biomarker is available for early detection and prevention of the condition or for the diagnosis of affected animals. The point in question is that the underlying pathological pathway of the condition is still unknown and multiple nutritional or management issues could be the cause of the disease. Common health status markers such as acute phase proteins, adenosine deaminase activity or total antioxidant capacity did not show any alteration in the saliva of animals with growth-rate retardation, so other pathways should be affected. The present study investigates saliva samples from animals with the same commercial crossbreed, sex and age, comparing control pigs and pigs with growth-rate retardation. A proteomics approach based on two-dimensional gel electrophoresis including mass spectrometry together with validation experiments was applied for the search of proteins that could help understand disease mechanisms and be used for early disease detection. Two proteins were detected as possible markers of growth-rate retardation, specifically S100A12 and carbonic anhydrase VI. A decrease in innate immune response was confirmed in pigs with growth-rate retardation, however further studies should be necessary to understand the role of the different CA VI proteoforms observed.
Collapse
|
9
|
de Souza-Vilela J, Andrew NR, Ruhnke I. Insect protein in animal nutrition. ANIMAL PRODUCTION SCIENCE 2019. [DOI: 10.1071/an19255] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Global meat consumption per capita is expected to increase ~40% from 2019 to 2050. Over 30% of the total cropland worldwide is currently being used to produce either livestock and poultry feed or silage to meet the demand. One solution to reduce cropland use for animal feed is to increase the production of alternative protein sources. The primary protein sources for animal nutrition, including soybeans, peas and fish meal, are of increasing demand and are subsequently becoming more expensive, making their long-term use unsustainable. Insects such as the black soldier fly larvae (Hermetia illucens), crickets (Gryllus testaceus Walker) or mealworms (Tenebrio molitor) offer a viable addition to the feed sources and can provide valuable, high-quality energy, protein and fat to an animal’s diet. Here, we review the environmental benefits of insect feedstuff, current research findings related to the use of insects for animal nutrition, and outline additional products that can generate benefits to insect producers.
Collapse
|
10
|
Gutiérrez AM, Montes A, Gutiérrez-Panizo C, Fuentes P, De La Cruz-Sánchez E. Gender influence on the salivary protein profile of finishing pigs. J Proteomics 2017; 178:107-113. [PMID: 29199151 DOI: 10.1016/j.jprot.2017.11.023] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 11/20/2017] [Accepted: 11/25/2017] [Indexed: 12/30/2022]
Abstract
A study on gender differences in the normal range of biomarkers in porcine saliva samples has the scope for further attention. In the present study, the salivary protein profiles of age-matched healthy male and female finishing pigs were compared. The levels of salivary adenosine deaminase (ADA) activity, haptoglobin (Hp) and C-reactive protein (CRP) have been quantified in 32 male and 32 female pigs to ensure the presence of gender effect on the median levels of salivary biomarkers. Moreover, the total salivary protein content was quantified and compared. The overall salivary protein distribution was compared with SDS-PAGE in 14 male and 14 female pigs and the possible gender influence in the salivary protein profile was analysed by 2DE in 6 male and 6 female pigs. Statistically significant differences were observed in the median values of Hp, CRP, and ADA between male and female pigs (p<0.005). Although the total salivary protein content was not different between the sexes, the salivary protein distribution and profile showed specific gender differences in three proteins of the lipocalin family: the odorant-binding protein, salivary lipocalin and lipocalin 1. These proteins have been related to animal immune status and should be further explored as possible porcine salivary biomarkers. SIGNIFICANCE The biological relevance of the reported research is based on the possible gender influence on the discovery of salivary biomarkers in porcine production. As differences have been reported in the salivary protein distribution in male pigs in comparison to that of female pigs, the normal-range values, according to gender, of the newly discovered biomarkers should be explored and defined prior to its application in the porcine production system. A hormonal sexual influence is highly hypothesized.
Collapse
Affiliation(s)
- Ana M Gutiérrez
- Department of Animal Medicine and Surgery, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, Espinardo, Murcia, Spain.
| | - Ana Montes
- Department of Animal Medicine and Surgery, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, Espinardo, Murcia, Spain
| | - Cándido Gutiérrez-Panizo
- Department of Animal Medicine and Surgery, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, Espinardo, Murcia, Spain
| | | | - Ernesto De La Cruz-Sánchez
- Department of Physical Activity and Sport, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, San Javier, Murcia, Spain
| |
Collapse
|