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Thapa A, Hasan MR, Kabir AH. Trichoderma afroharzianum T22 Induces Rhizobia and Flavonoid-Driven Symbiosis to Promote Tolerance to Alkaline Stress in Garden Pea. PLANT, CELL & ENVIRONMENT 2025. [PMID: 40298200 DOI: 10.1111/pce.15581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Revised: 04/15/2025] [Accepted: 04/17/2025] [Indexed: 04/30/2025]
Abstract
Soil alkalinity is a limiting factor for crops, yet the role of beneficial fungi in mitigating this abiotic stress in garden pea is understudied. In this study, Trichoderma afroharzianum T22 colonised the roots of garden pea cultivars exposed to soil alkalinity in a host-specific manner. In alkaline-exposed Sugar Snap, T22 improved growth parameters, consistent with increased tissue mineral content, particularly Fe and Mn, as well as enhanced rhizosphere siderophore levels. The split-root assay demonstrated that the beneficial effects of T22 on alkaline stress mitigation are the result of a whole-plant association rather than localised root-specific effects. RNA-seq analysis showed 575 and 818 differentially expressed genes upregulated and downregulated in the roots inoculated with T22 under alkaline conditions. The upregulated genes were mostly involved in the flavonoid biosynthetic pathway (monooxygenase activity, ammonia-lyase activity, 4-coumarate-CoA ligase), along with genes related to mineral transport and redox homoeostasis. Further, a flavonoid precursor restored plant health even in the absence of T22, confirming the role of microbial symbiosis in mitigating alkaline stress. Interestingly, T22 restored the abundance of rhizobia, particularly Rhizobium leguminosarum and Rhizobium indicum, along with the induction of NifA, NifD, and NifH in nodules, suggesting a connection between T22 and rhizobia under soil alkalinity. Further, the elevated rhizosphere siderophore, root flavonoid, expression of PsCoA (4-coumarate-CoA ligase) as well as the relative abundance of TaAOX1 and R. leguminosarum diminished when T22 was substituted with exogenous Fe. This suggests that exogenous Fe eliminates the need for microbiome-driven mineral mobilisation, while T22-mediated alkaline stress mitigation depends on flavonoid-driven symbiosis and R. leguminosarum abundance. It was further supported by the positive interaction of T22 on R. leguminosarum growth in alkaline media. Thus, the beneficial effect of T22 on rhizobia likely stems from their interactions, not solely from the improved mineral status, particularly Fe, in plants. This study provides the first mechanistic insights into T22 interactions with host and rhizobia, advancing microbiome strategies to alleviate soil alkalinity in peas and other legumes.
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Affiliation(s)
- Asha Thapa
- School of Sciences, University of Louisiana at Monroe, Monroe, Louisiana, USA
| | - Md Rokibul Hasan
- School of Sciences, University of Louisiana at Monroe, Monroe, Louisiana, USA
| | - Ahmad H Kabir
- School of Sciences, University of Louisiana at Monroe, Monroe, Louisiana, USA
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Kabir AH, Thapa A, Hasan MR, Parvej MR. Local signal from Trichoderma afroharzianum T22 induces host transcriptome and endophytic microbiome leading to growth promotion in sorghum. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:7107-7126. [PMID: 39110656 DOI: 10.1093/jxb/erae340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Accepted: 08/05/2024] [Indexed: 12/11/2024]
Abstract
Trichoderma, a highly abundant soil fungus, may benefit plants, yet it remains understudied in sorghum (Sorghum bicolor). In this study, sorghum plants were grown for 5 weeks in pots of soil with or without inoculation of T. afroharzianum T22. Inoculation with T. afroharzianum T22 significantly increased growth parameters and nutrient levels, demonstrating its beneficial role in sorghum. A split-root assay demonstrated that T. afroharzianum T22 is essential in both compartments of the pot for promoting plant growth, suggesting that local signals from this fungus drive symbiotic benefits in sorghum. RNA-seq analysis revealed that inoculation with T. afroharzianum T22 induced genes responsible for mineral transport (such as nitrate and aquaporin transporters), auxin response, sugar assimilation (hexokinase), and disease resistance (thaumatin) in sorghum roots. Microbial community analysis further unveiled the positive role of T. afroharzianum T22 in enriching Penicillium and Streptomyces while reducing disease-causing Fusarium in the roots. The microbial consortium, consisting of enriched microbiomes from bacterial and fungal communities, showed disrupted morphological features in plants inoculated with T. afroharzianum T22 in the absence of Streptomyces griseus. However, this disruption was not observed in the absence of Penicillium chrysogenum. These results indicate that S. griseus acts as a helper microbe in close association with T. afroharzianum T22 in the sorghum endosphere. This study provides the first comprehensive explanation of how T. afroharzianum T22 modulates host molecular determinants and endophytic helper microbes, thereby collectively promoting sorghum growth. These findings may facilitate the formulation of synthetic microbial inoculants dominated by T. afroharzianum T22 to enhance growth and stress resilience in sorghum and similar crops.
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Affiliation(s)
- Ahmad H Kabir
- School of Sciences, University of Louisiana at Monroe, Monroe, LA 71209, USA
| | - Asha Thapa
- School of Sciences, University of Louisiana at Monroe, Monroe, LA 71209, USA
| | - Md Rokibul Hasan
- School of Sciences, University of Louisiana at Monroe, Monroe, LA 71209, USA
| | - Md Rasel Parvej
- Scott Research, Extension, and Education Center, School of Plant, Environmental, and Soil Sciences, Louisiana State University, Winnsboro, LA 71295, USA
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Firdu Z, Dida G. Extraction, identification and mass production of arbuscular mycorrhizal fungi (AMF) from faba bean ( Vicia faba L.) rhizosphere soils using maize ( Zea mays L.) as a host plant. Heliyon 2024; 10:e36838. [PMID: 39281543 PMCID: PMC11401028 DOI: 10.1016/j.heliyon.2024.e36838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 08/21/2024] [Accepted: 08/22/2024] [Indexed: 09/18/2024] Open
Abstract
Ethiopia is the second-largest grower of faba bean in the world next to China. The crop is highly useful with its edible seed serving as an essential protein complement of the Ethiopian diet, especially for those who cannot afford animal protein. Even though faba bean is mycotrophic to Arbuscular Mycorrhizal fungi (AMF), the different genera and species that are associated with the crop are not determined in yet at the maturity time of the crop (harvesting period). Sixteen faba bean rhizospheric soils were collected to isolate and identify AMF. Spores were extracted using the wet-sieving and decanting method. The Glomus genera was the most dominant, followed by the Acaulospora and Gigaspora genera. The highest spore load per 100 g of soil was observed in the sample that contained the lowest soil phosphorus. Furthermore, an inverse relationship between the spore load and soil phosphorus was observed. Three treatments were considered for mass multiplication of AMF, viz, Treatment (1) Glomus aggregatum, treatment (2) Glomus sp.BZ, and treatment (3) Glomus sp.AZ. However, the highest number of AMF's spore and root colonization was seen in treatment 3 with significant difference (P < 0.05) from the others. In conclusion, AMF constituted an important component of the faba bean rhizosphere during its harvesting period (dry season) and its multiplication using maize favored the viability and infectivity of the fungi.
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Affiliation(s)
- Zewdineh Firdu
- Madda Walabu University, College of Natural and Computational Sciences, Department of Biology, Bale Robe, Ethiopia, P.O.BOX: 247
| | - Getu Dida
- Madda Walabu University, College of Natural and Computational Sciences, Department of Biology, Bale Robe, Ethiopia, P.O.BOX: 247
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Wu D, Fu W, Wang N, Ye Y, He J, Wu K. Genome-Wide Identification and Expression Characterization of the D27 Gene Family of Capsicum annuum L. PLANTS (BASEL, SWITZERLAND) 2024; 13:2070. [PMID: 39124188 PMCID: PMC11314413 DOI: 10.3390/plants13152070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 07/24/2024] [Accepted: 07/24/2024] [Indexed: 08/12/2024]
Abstract
As a crucial member of the gene family involved in the biosynthesis of strigolactones, D27 plays an important regulatory role in plant branching and root development, which is essential for field management and yield increase in peppers (Capsicum annuum L.). To comprehensively understand the characteristics of the pepper D27 gene family, we identified three CaD27 genes. By analyzing their physicochemical properties, phylogenetic relationships, gene structures, promoters, and expression patterns in different tissues, the characteristics of the CaD27 gene family were revealed. The research results showed that these three CaD27 genes are located in three different chromosomes. Evolutionary analysis divided the members of CaD27 into three groups, and gene collinearity analysis did not find any duplicates, indicating the diversity and non-redundancy of the CaD27 gene family members. In addition, we identified and classified cis-elements in the promoter regions of CaD27 genes, with a relatively high proportion related to light and plant hormone responses. Expression pattern analysis showed that CaD27.1 is expressed in leaves, while CaD27.2 is expressed in roots, indicating tissue specificity. Furthermore, protein interaction predictions revealed an interaction between D27.2 and CCD7. This study provided important insights into the function and regulatory mechanisms of the CaD27 gene family and the role of strigolactones in plant growth and development.
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Affiliation(s)
- Di Wu
- Research Institute of Pepper, Guizhou Academy of Agricultural Science, Guiyang 550025, China; (D.W.); (W.F.); (N.W.); (Y.Y.)
| | - Wenting Fu
- Research Institute of Pepper, Guizhou Academy of Agricultural Science, Guiyang 550025, China; (D.W.); (W.F.); (N.W.); (Y.Y.)
| | - Nanyi Wang
- Research Institute of Pepper, Guizhou Academy of Agricultural Science, Guiyang 550025, China; (D.W.); (W.F.); (N.W.); (Y.Y.)
| | - Yong Ye
- Research Institute of Pepper, Guizhou Academy of Agricultural Science, Guiyang 550025, China; (D.W.); (W.F.); (N.W.); (Y.Y.)
| | - Jianwen He
- Research Institute of Pepper, Guizhou Academy of Agricultural Science, Guiyang 550025, China; (D.W.); (W.F.); (N.W.); (Y.Y.)
| | - Kangyun Wu
- Key Laboratory of Crop Genetic Resources and Germplasm Innovation in Karst Mountain Areas, Ministry of Agriculture and Rural Affairs, Guiyang 550025, China
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Daignan-Fornier S, Keita A, Boyer FD. Chemistry of Strigolactones, Key Players in Plant Communication. Chembiochem 2024; 25:e202400133. [PMID: 38607659 DOI: 10.1002/cbic.202400133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 04/12/2024] [Accepted: 04/12/2024] [Indexed: 04/13/2024]
Abstract
Today, the use of artificial pesticides is questionable and the adaptation to global warming is a necessity. The promotion of favorable natural interactions in the rhizosphere offers interesting perspectives for changing the type of agriculture. Strigolactones (SLs), the latest class of phytohormones to be discovered, are also chemical mediators in the rhizosphere. We present in this review the diversity of natural SLs, their analogs, mimics, and probes essential for the biological studies of this class of compounds. Their biosynthesis and access by organic synthesis are highlighted especially concerning noncanonical SLs, the more recently discovered natural SLs. Organic synthesis of analogs, stable isotope-labeled standards, mimics, and probes are also reviewed here. In the last part, the knowledge about the SL perception is described as well as the different inhibitors of SL receptors that have been developed.
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Affiliation(s)
- Suzanne Daignan-Fornier
- Institut de Chimie des Substances Naturelles, UPR 2301, Université Paris-Saclay, CNRS, 91198, Gif-sur-Yvette, France
| | - Antoinette Keita
- Institut de Chimie des Substances Naturelles, UPR 2301, Université Paris-Saclay, CNRS, 91198, Gif-sur-Yvette, France
| | - François-Didier Boyer
- Institut de Chimie des Substances Naturelles, UPR 2301, Université Paris-Saclay, CNRS, 91198, Gif-sur-Yvette, France
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Mitra D, Panneerselvam P, Chidambaranathan P, Nayak AK, Priyadarshini A, Senapati A, Mohapatra PKD. Strigolactone GR24-mediated mitigation of phosphorus deficiency through mycorrhization in aerobic rice. CURRENT RESEARCH IN MICROBIAL SCIENCES 2024; 6:100229. [PMID: 38525307 PMCID: PMC10958977 DOI: 10.1016/j.crmicr.2024.100229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024] Open
Abstract
Strigolactones (SLs) are a new class of plant hormones that play a significant role in regulating various aspects of plant growth promotion, stress tolerance and influence the rhizospheric microbiome. GR24 is a synthetic SL analog used in scientific research to understand the effects of SL on plants and to act as a plant growth promoter. This study aimed to conduct hormonal seed priming at different concentrations of GR24 (0.1, 0.5, 1.0, 5.0 and 10.0 µM with and without arbuscular mycorrhizal fungi (AMF) inoculation in selected aerobic rice varieties (CR Dhan 201, CR Dhan 204, CR Dhan 205, and CR Dhan 207), Kasalath-IC459373 (P-tolerant check), and IR-36 (P-susceptible check) under phosphorus (P)-deficient conditions to understand the enhancement of growth and priming effects in mycorrhization. Our findings showed that seed priming with 5.0 µM SL GR24 enhanced the performance of mycorrhization in CR Dhan 205 (88.91 %), followed by CR Dhan 204 and 207, and AMF sporulation in CR Dhan 201 (31.98 spores / 10 gm soil) and CR Dhan 207 (30.29 spores / 10 g soil), as well as rice growth. The study showed that the highly responsive variety CR Dhan 207 followed by CR Dhan 204, 205, 201, and Kasalath IC459373 showed higher P uptake than the control, and AMF treated with 5.0 µM SL GR24 varieties CR Dhan 205 followed by CR Dhan 207 and 204 showed the best performance in plant growth, chlorophyll content, and soil functional properties, such as acid and alkaline phosphatase activity, soil microbial biomass carbon (MBC), dehydrogenase activity (DHA), and fluorescein diacetate activity (FDA). Overall, AMF intervention with SL GR24 significantly increased plant growth, soil enzyme activity, and uptake of P compared to the control. Under P-deficient conditions, seed priming with 5.0 µM strigolactone GR24 and AMF inoculum significantly increased selected aerobic rice growth, P uptake, and soil enzyme activities. Application of SLs formulations with AMF inoculum in selected aerobic rice varieties, CR Dhan 207, CR Dhan 204, and CR Dhan 205, will play an important role in mycorrhization, growth, and enhancement of P utilization under P- nutrient deficient conditions.
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Affiliation(s)
- Debasis Mitra
- Department of Microbiology, Raiganj University, Raiganj, Uttar Dinajpur, 733134 West Bengal, India
- ICAR – National Rice Research Institute, Cuttack, 753006 Odisha, India
| | | | | | | | | | - Ansuman Senapati
- ICAR – National Rice Research Institute, Cuttack, 753006 Odisha, India
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Tong N, Zhang C, Xu X, Zhang Z, Li J, Liu Z, Chen Y, Zhang Z, Huang Y, Lin Y, Lai Z. Genome-Wide Identification and Expression Analysis of DWARF53 Gene in Response to GA and SL Related to Plant Height in Banana. PLANTS (BASEL, SWITZERLAND) 2024; 13:458. [PMID: 38337990 PMCID: PMC10857657 DOI: 10.3390/plants13030458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/31/2024] [Accepted: 02/01/2024] [Indexed: 02/12/2024]
Abstract
Dwarfing is one of the common phenotypic variations in asexually reproduced progeny of banana, and dwarfed banana is not only windproof and anti-fallout but also effective in increasing acreage yield. As a key gene in the strigolactone signalling pathway, DWARF53 (D53) plays an important role in the regulation of the height of plants. In order to gain insight into the function of the banana D53 gene, this study conducted genome-wide identification of banana D53 gene based on the M. acuminata, M. balbisiana and M. itinerans genome database. Analysis of MaD53 gene expression under high temperature, low temperature and osmotic stress based on transcriptome data and RT-qPCR was used to analyse MaD53 gene expression in different tissues as well as in different concentrations of GA and SL treatments. In this study, we identified three MaD53, three MbD53 and two MiD53 genes in banana. Phylogenetic tree analysis showed that D53 Musa are equally related to D53 Asparagales and Poales. Both high and low-temperature stresses substantially reduced the expression of the MaD53 gene, but osmotic stress treatments had less effect on the expression of the MaD53 gene. GR24 treatment did not significantly promote the height of the banana, but the expression of the MaD53 gene was significantly reduced in roots and leaves. GA treatment at 100 mg/L significantly promoted the expression of the MaD53 gene in roots, but the expression of this gene was significantly reduced in leaves. In this study, we concluded that MaD53 responds to GA and SL treatments, but "Yinniaijiao" dwarf banana may not be sensitive to GA and SL.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - Zhongxiong Lai
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (N.T.); (C.Z.); (X.X.); (Z.Z.); (J.L.); (Z.L.); (Y.C.); (Z.Z.); (Y.H.); (Y.L.)
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8
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Basso MF, Contaldi F, Lo Celso F, Baratto CM, Grossi-de-Sa MF, Barone G, Ferrante A, Martinelli F. Identification and expression profile of the SMAX/SMXL family genes in chickpea and lentil provide important players of biotechnological interest involved in plant branching. PLANTA 2023; 259:1. [PMID: 37966555 PMCID: PMC10651550 DOI: 10.1007/s00425-023-04277-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 10/28/2023] [Indexed: 11/16/2023]
Abstract
MAIN CONCLUSION SMAX/SMXL family genes were successfully identified and characterized in the chickpea and lentil and gene expression data revealed several genes associated with the modulation of plant branching and powerful targets for use in transgenesis and genome editing. Strigolactones (SL) play essential roles in plant growth, rooting, development, and branching, and are associated with plant resilience to abiotic and biotic stress conditions. Likewise, karrikins (KAR) are "plant smoke-derived molecules" that act in a hormonal signaling pathway similar to SL playing an important role in seed germination and hairy root elongation. The SMAX/SMXL family genes are part of these two signaling pathways, in addition to some of these members acting in a still little known SL- and KAR-independent signaling pathway. To date, the identification and functional characterization of the SMAX/SMXL family genes has not been performed in the chickpea and lentil. In this study, nine SMAX/SMXL genes were systematically identified and characterized in the chickpea and lentil, and their expression profiles were explored under different unstressless or different stress conditions. After a comprehensive in silico characterization of the genes, promoters, proteins, and protein-protein interaction network, the expression profile for each gene was determined using a meta-analysis from the RNAseq datasets and complemented with real-time PCR analysis. The expression profiles of the SMAX/SMXL family genes were very dynamic in different chickpea and lentil organs, with some genes assuming a tissue-specific expression pattern. In addition, these genes were significantly modulated by different stress conditions, indicating that SMAX/SMXL genes, although working in three distinct signaling pathways, can act to modulate plant resilience. Most CaSMAX/SMXL and partner genes such as CaTiE1 and CaLAP1, have a positive correlation with the plant branching level, while most LcSMAX/SMXL genes were less correlated with the plant branching level. The SMXL6, SMXL7, SMXL8, TiE1, LAP1, BES1, and BRC1 genes were highlighted as powerful targets for use in transgenesis and genome editing aiming to develop chickpea and lentil cultivars with improved architecture. Therefore, this study presented a detailed characterization of the SMAX/SMXL genes in the chickpea and lentil, and provided new insights for further studies focused on each SMAX/SMXL gene.
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Affiliation(s)
| | - Felice Contaldi
- Department of Biology, University of Florence, 50019, Sesto Fiorentino, Italy
| | - Fabrizio Lo Celso
- Department of Physics and Chemical, University of Palermo, Viale Delle Scienze, Edificio 17, 90128, Palermo, Italy
| | - César Milton Baratto
- University of Western Santa Catarina, Biotechnological Center, UNOESC, Videira, SC, 89566-252, Brazil
| | | | - Giampaolo Barone
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale Delle Scienze, Edificio 17, 90128, Palermo, Italy
| | - Antonio Ferrante
- Department of Agricultural and Environmental Sciences, University of Milan, Via Festa del Perdono, 20122, Milan, Italy
| | - Federico Martinelli
- Department of Biology, University of Florence, 50019, Sesto Fiorentino, Italy.
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Basso MF, Contaldi F, Celso FL, Karalija E, Paz-Carrasco LC, Barone G, Ferrante A, Martinelli F. Expression profile of the NCED/CCD genes in chickpea and lentil during abiotic stress reveals a positive correlation with increased plant tolerance. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2023; 336:111817. [PMID: 37562731 DOI: 10.1016/j.plantsci.2023.111817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 07/28/2023] [Accepted: 08/03/2023] [Indexed: 08/12/2023]
Abstract
Carotenoid cleavage dioxygenase (CCD) gene family is organized in two subfamilies: (i) 9-cis epoxycarotenoid dioxygenase (NCED) genes and (ii) CCD genes. NCED genes are essential for catalyzing the first step of the abscisic-acid (ABA) biosynthesis, while CCD genes produce precursors of the strigolactones hormone. The functional characterization of these gene subfamilies has not been yet performed in chickpea and lentil. Herein, were identified and systematically characterized two NCED and five CCD genes in the chickpea and two NCED and six CCD genes in lentil. After in silico sequence analysis and phylogeny, the expression profile of the NCED/CCD genes was determined by meta-analysis and real-time PCR in plants under different stress conditions. Sequence data revealed that NCED/CCD genes are highly conserved between chickpea and lentil. This conservation was observed both at gene and protein sequence levels and phylogenetic relationships. Analysis of the promoter sequences revealed that all NCED/CCD genes have a considerable number of cis-regulatory elements responsive to biotic and abiotic stress. Protein sequence analysis evidenced that NCED/CCD genes share several conserved motifs and that they have a highly interconnected interaction network. Furthermore, the three-dimensional structure of these proteins was determined and indicated that some proteins have structures with considerable similarity. The meta-analysis revealed that NCED/CCD genes are dynamically modulated in different organs and under different stress conditions, but they have a positive correlation with plant tolerance. In accordance, real-time PCR data showed that both NCED and CCD genes are differentially modulated in plants under drought stress. In particular, CaNCED2, CaCCD5, LcNCED2, LcCCD1, and LcCCD2 genes have a positive correlation with improved plant tolerance to drought stress. Therefore, this study presented a detailed characterization of the chickpea and lentil NCED/CCD genes and provided new insights to improve abiotic stress tolerance in these two important crops.
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Affiliation(s)
- Marcos Fernando Basso
- Department of Biology, University of Florence, Sesto Fiorentino 50019, Florence, Italy; University of Western Santa Catarina, Biotechnological Center, UNOESC, Videira, SC 89566-252, Brazil
| | - Felice Contaldi
- Department of Biology, University of Florence, Sesto Fiorentino 50019, Florence, Italy
| | - Fabrizio Lo Celso
- Department of Physics and Chemical, University of Palermo, Viale delle Scienze, Edificio 17, 90128 Palermo, Italy
| | - Erna Karalija
- Department of Biology, University of Florence, Sesto Fiorentino 50019, Florence, Italy; Department of Biology, Faculty of science, University of Sarajevo, Zmaja od Bosne 33-35, 71000 Sarajevo, Bosnia and Herzegovina
| | - Lenin Celiano Paz-Carrasco
- National Institute of Agricultural Research (INIAP), Plant Pathology Department and Rice Breeding Program, Km 26 vía Duran-Tambo, Yaguachi, Guayas, Ecuador
| | - Giampaolo Barone
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Edificio 17, 90128 Palermo, Italy
| | - Antonio Ferrante
- Department of Agricultural and Environmental Sciences, Università degli Studi di Milano, Via Celoria 2, 20133 Milan, Italy
| | - Federico Martinelli
- Department of Biology, University of Florence, Sesto Fiorentino 50019, Florence, Italy.
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Rani V, Sengar RS, Garg SK, Mishra P, Shukla PK. RETRACTED ARTICLE: Physiological and Molecular Role of Strigolactones as Plant Growth Regulators: A Review. Mol Biotechnol 2023:10.1007/s12033-023-00694-2. [PMID: 36802323 DOI: 10.1007/s12033-023-00694-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 02/09/2023] [Indexed: 02/23/2023]
Affiliation(s)
- Varsha Rani
- Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, 250110, India.
| | - R S Sengar
- Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, 250110, India.
| | - Sanjay Kumar Garg
- M. J. P. Rohilkhand University, Bareilly, Uttar Pradesh, 243006, India
| | - Pragati Mishra
- Sam Higginbottom University of Agriculture, Technology and Sciences, Allahabad, Uttar Pradesh, 211007, India
| | - Pradeep Kumar Shukla
- Sam Higginbottom University of Agriculture, Technology and Sciences, Allahabad, Uttar Pradesh, 211007, India
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The Strigolactone Pathway Is a Target for Modifying Crop Shoot Architecture and Yield. BIOLOGY 2023; 12:biology12010095. [PMID: 36671787 PMCID: PMC9855930 DOI: 10.3390/biology12010095] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 01/05/2023] [Accepted: 01/05/2023] [Indexed: 01/11/2023]
Abstract
Due to their sessile nature, plants have developed the ability to adapt their architecture in response to their environment. Branching is an integral component of plant architecture, where hormonal signals tightly regulate bud outgrowth. Strigolactones (SLs), being a novel class of phytohormone, are known to play a key role in branching decisions, where they act as a negative regulator of bud outgrowth. They can achieve this by modulating polar auxin transport to interrupt auxin canalisation, and independently of auxin by acting directly within buds by promoting the key branching inhibitor TEOSINTE BRANCHED1. Buds will grow out in optimal conditions; however, when conditions are sub-optimal, SL levels increase to restrict branching. This can be a problem in agricultural applications, as reductions in branching can have deleterious effects on crop yield. Variations in promoter elements of key SL-related genes, such as IDEAL PLANT ARCHITECTURE1, have been identified to promote a phenotype with enhanced yield performance. In this review we highlight how this knowledge can be applied using new technologies to develop new genetic variants for improving crop shoot architecture and yield.
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12
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Luo L. Is strigolactone signaling a key player in regulating tiller formation in response to nitrogen? FRONTIERS IN PLANT SCIENCE 2022; 13:1081740. [PMID: 36589130 PMCID: PMC9800024 DOI: 10.3389/fpls.2022.1081740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
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Soliman S, Wang Y, Han Z, Pervaiz T, El-kereamy A. Strigolactones in Plants and Their Interaction with the Ecological Microbiome in Response to Abiotic Stress. PLANTS (BASEL, SWITZERLAND) 2022; 11:3499. [PMID: 36559612 PMCID: PMC9781102 DOI: 10.3390/plants11243499] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 12/07/2022] [Accepted: 12/08/2022] [Indexed: 06/17/2023]
Abstract
Phytohormones play an essential role in enhancing plant tolerance by responding to abiotic stresses, such as nutrient deficiency, drought, high temperature, and light stress. Strigolactones (SLs) are carotenoid derivatives that occur naturally in plants and are defined as novel phytohormones that regulate plant metabolism, growth, and development. Strigolactone assists plants in the acquisition of defensive characteristics against drought stress by initiating physiological responses and mediating the interaction with soil microorganisms. Nutrient deficiency is an important abiotic stress factor, hence, plants perform many strategies to survive against nutrient deficiency, such as enhancing the efficiency of nutrient uptake and forming beneficial relationships with microorganisms. Strigolactone attracts various microorganisms and provides the roots with essential elements, including nitrogen and phosphorus. Among these advantageous microorganisms are arbuscular mycorrhiza fungi (AMF), which regulate plant metabolic activities through phosphorus providing in roots. Bacterial nodulations are also nitrogen-fixing microorganisms found in plant roots. This symbiotic relationship is maintained as the plant provides organic molecules, produced in the leaves, that the bacteria could otherwise not independently generate. Related stresses, such as light stress and high-temperature stress, could be affected directly or indirectly by strigolactone. However, the messengers of these processes are unknown. The most prominent connector messengers have been identified upon the discovery of SLs and the understanding of their hormonal effect. In addition to attracting microorganisms, these groups of phytohormones affect photosynthesis, bridge other phytohormones, induce metabolic compounds. In this article, we highlighted the brief information available on SLs as a phytohormone group regarding their common related effects. In addition, we reviewed the status and described the application of SLs and plant response to abiotic stresses. This allowed us to comprehend plants' communication with the ecological microbiome as well as the strategies plants use to survive under various stresses. Furthermore, we identify and classify the SLs that play a role in stress resistance since many ecological microbiomes are unexplained.
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Affiliation(s)
- Sabry Soliman
- Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA 92521, USA
- Department of Horticulture, Faculty of Agriculture, Ain Shams University, Cairo 11566, Egypt
- Department of Fruit Science, College of Horticulture, China Agriculture University, Beijing 100083, China
| | - Yi Wang
- Department of Fruit Science, College of Horticulture, China Agriculture University, Beijing 100083, China
| | - Zhenhai Han
- Department of Fruit Science, College of Horticulture, China Agriculture University, Beijing 100083, China
| | - Tariq Pervaiz
- Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA 92521, USA
| | - Ashraf El-kereamy
- Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA 92521, USA
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Wen S, Tu Z, Wei L, Li H. Liriodendron chinense LcMAX1 regulates primary root growth and shoot branching in Arabidopsis thaliana. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 190:1-10. [PMID: 36084353 DOI: 10.1016/j.plaphy.2022.08.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Revised: 08/10/2022] [Accepted: 08/23/2022] [Indexed: 06/15/2023]
Abstract
Strigolactones (SLs) play prominent roles in regulating shoot branching and root architecture in model plants. However, their roles in non-model (particularly woody) plants remain unclear. Liriodendron chinense is a timber tree species widely planted in southern China. The outturn percentage and wood quality of L. chinense are greatly affected by the branching characteristics of its shoot, and the rooting ability of the cuttings is key for its vegetative propagation. Here, we isolated and analyzed the function of the MORE AXILLARY GROWTH 1 (LcMAX1) gene, which is involved in L. chinense SL biosynthesis. RT-qPCR showed that LcMAX1 was highly expressed in the roots and axillary buds. LcMAX1 was located in the endoplasmic reticulum (ER) and nucleus. LcMAX1 ectopic expression promoted primary root growth, whereas there were no phenotypic differences in shoot branching between transgenic and wild-type (WT) A. thaliana plants. LcMAX1 overexpression in the max1 mutant restored them to the WT A. thaliana phenotypes. Additionally, AtPIN1, AtPIN2, and AtBRC1 expressions were significantly upregulated in transgenic A. thaliana and the max1 mutant. It was therefore speculated that LcMAX1 promotes primary root growth by regulating expression of auxin transport-related genes in A. thaliana, and LcMAX1 inhibits shoot branching by upregulating expression of AtBRC1 in the max1 mutant. Altogether, these results demonstrated that the root development and shoot branching functions of LcMAX1 were similar to those of AtMAX1. Our findings provide a foundation for obtaining further insights into root and branch development in L. chinense.
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Affiliation(s)
- Shaoying Wen
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China.
| | - Zhonghua Tu
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China.
| | - Lingming Wei
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China.
| | - Huogen Li
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China.
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Du Y, Wu B, Xing Y, Zhang Z. Conservation and divergence: Regulatory networks underlying reproductive branching in rice and maize. J Adv Res 2022; 41:179-190. [PMID: 36328747 PMCID: PMC9637487 DOI: 10.1016/j.jare.2022.01.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 12/27/2021] [Accepted: 01/26/2022] [Indexed: 12/31/2022] Open
Abstract
BACKGROUND Cereal crops are a major source of raw food and nutrition for humans worldwide. Inflorescence of cereal crops is their reproductive organ, which also contributes to crop productivity. The branching pattern in flowering plant species not only determines inflorescence architecture but also determines the grain yield. There are good reviews describing the grass inflorescence architecture contributing to the final grain yield. However, very few discuss the aspects of inflorescence branching. AIM OF REVIEW This review aimed at systematically and comprehensively summarizing the latest progress in the field of conservation and divergence of genetic regulatory network that controls inflorescence branching in maize and rice, provide strategies to efficiently utilize the achievements in reproductive branching for crop yield improvement, and suggest a potential regulatory network underlying the inflorescence branching and vegetative branching system. KEY SCIENTIFIC CONCEPTS OF REVIEW Inflorescence branching is the consequence of a series of developmental events including the initiation, outgrowth, determinacy, and identity of reproductive axillary meristems, and it is controlled by a complex functional hierarchy of genetic networks. Initially, we compared the inflorescence architecture of maize and rice; then, we reviewed the genetic regulatory pathways controlling the inflorescence meristem size, bud initiation, and outgrowth, and the key transition steps that shape the inflorescence branching in maize and rice; additionally, we summarized strategies to effectively apply the recent advances in inflorescence branching for crop yield improvement. Finally, we discussed how the newly discovered hormones coordinate the regulation of inflorescence branching and yield traits. Furthermore, we discussed the possible reason behind distinct regulatory pathways for vegetative and inflorescence branching.
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Affiliation(s)
- Yanfang Du
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Tai-An, Shandong 271018, China
| | - Bi Wu
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China
| | - Yongzhong Xing
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China.
| | - Zuxin Zhang
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China.
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16
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Yata A, Nosaki S, Yoda A, Nomura T, Miura K. Production and stably maintenance of strigolactone by transient expression of biosynthetic enzymes in Nicotiana benthamiana. FRONTIERS IN PLANT SCIENCE 2022; 13:1027004. [PMID: 36388605 PMCID: PMC9650523 DOI: 10.3389/fpls.2022.1027004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Strigolactones (SLs) are phytohormones that play an essential role in plant-microbe interactions. The instability of SLs makes it challenging to use them for application to agriculture. In this study, we successfully produced a large amount of the 4-deoxyorobanchol (4DO), one of SLs, in the leaves of Nicotiana benthamiana, using a transient expression system to express SL biosynthetic enzymes. Using this system, the yield of 4DO was 2.1 ± 0.3 μg/gFM (fresh mass). Treatment of leaves at 80°C for 16 h killed Agrobacterium and approximately half amount of 4DO was left in the leaves (1.0 μg/gFM (calculated based on the original FM) ± 0.3). Interestingly, incubation of dried leaves at room temperature for 1 month maintained an almost equal amount of 4DO (0.9 ± 0.2 μg/gFM) in the leaves. These results suggest that high accumulation of 4DO with stability for long periods can be achieved in plant leaves.
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Affiliation(s)
- Akira Yata
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Shohei Nosaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
- Tsukuba-Plant Innovation Research Center (T-PIRC), University of Tsukuba, Tsukuba, Japan
| | - Akiyoshi Yoda
- Department of Biological Production Science, United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
- Center for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan
| | - Takahito Nomura
- Department of Biological Production Science, United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
- Center for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan
| | - Kenji Miura
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
- Tsukuba-Plant Innovation Research Center (T-PIRC), University of Tsukuba, Tsukuba, Japan
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Huang R, Li Z, Shen X, Choi J, Cao Y. The Perspective of Arbuscular Mycorrhizal Symbiosis in Rice Domestication and Breeding. Int J Mol Sci 2022; 23:ijms232012383. [PMID: 36293238 PMCID: PMC9604486 DOI: 10.3390/ijms232012383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 10/10/2022] [Accepted: 10/13/2022] [Indexed: 11/21/2022] Open
Abstract
In nature, symbiosis with arbuscular mycorrhizal (AM) fungi contributes to sustainable acquisition of phosphorus and other elements in over 80% of plant species; improving interactions with AM symbionts may mitigate some of the environmental problems associated with fertilizer application in grain crops such as rice. Recent developments of high-throughput genome sequencing projects of thousands of rice cultivars and the discovery of the molecular mechanisms underlying AM symbiosis suggest that interactions with AM fungi might have been an overlooked critical trait in rice domestication and breeding. In this review, we discuss genetic variation in the ability of rice to form AM symbioses and how this might have affected rice domestication. Finally, we discuss potential applications of AM symbiosis in rice breeding for more sustainable agriculture.
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Affiliation(s)
- Renliang Huang
- National Engineering Research Center of Rice (Nanchang), Key Laboratory of Rice Physiology and Genetics of Jiangxi Province, Rice Research Institute, Jiangxi Academy of Agriculture Science, Nanchang 330200, China
| | - Zheng Li
- State Key Laboratory of Agriculture Microbiology, Hubei Hongshan Laboratory, Huazhong Agriculture University, Wuhan 430000, China
| | - Xianhua Shen
- National Engineering Research Center of Rice (Nanchang), Key Laboratory of Rice Physiology and Genetics of Jiangxi Province, Rice Research Institute, Jiangxi Academy of Agriculture Science, Nanchang 330200, China
| | - Jeongmin Choi
- Crop Science Centre, Department of Plant Sciences, University of Cambridge, Lawrence Weaver Road, Cambridge CB3 0LE, UK
| | - Yangrong Cao
- State Key Laboratory of Agriculture Microbiology, Hubei Hongshan Laboratory, Huazhong Agriculture University, Wuhan 430000, China
- Correspondence:
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Fornier SD, de Saint Germain A, Retailleau P, Pillot JP, Taulera Q, Andna L, Miesch L, Rochange S, Pouvreau JB, Boyer FD. Noncanonical Strigolactone Analogues Highlight Selectivity for Stimulating Germination in Two Phelipanche ramosa Populations. JOURNAL OF NATURAL PRODUCTS 2022; 85:1976-1992. [PMID: 35776904 DOI: 10.1021/acs.jnatprod.2c00282] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Strigolactones (SLs) are plant hormones exuded in the rhizosphere with a signaling role for the development of arbuscular mycorrhizal (AM) fungi and as stimulants of seed germination of the parasitic weeds Orobanche, Phelipanche, and Striga, the most threatening weeds of major crops worldwide. Phelipanche ramosa is present mainly on rape, hemp, and tobacco in France. P. ramosa 2a preferentially attacks hemp, while P. ramosa 1 attacks rapeseed. The recently isolated cannalactone (14) from hemp root exudates has been characterized as a noncanonical SL that selectively stimulates the germination of P. ramosa 2a seeds in comparison with P. ramosa 1. In the present work, (-)-solanacol (5), a canonical orobanchol-type SL exuded by tobacco and tomato, was established to possess a remarkable selective germination stimulant activity for P. ramosa 2a seeds. Two cannalactone analogues, named (±)-SdL19 and (±)-SdL118, have been synthesized. They have an unsaturated acyclic carbon chain with a tertiary hydroxy group and a methyl or a cyclopropyl group instead of a cyclohexane A-ring, respectively. (±)-SdL analogues are able to selectively stimulate P. ramosa 2a, revealing that these minimal structural elements are key for this selective bioactivity. In addition, (±)-SdL19 is able to inhibit shoot branching in Pisum sativum and Arabidopsis thaliana and induces hyphal branching in the AM fungus Rhizophagus irregularis, like SLs.
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Affiliation(s)
- Suzanne Daignan Fornier
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
| | - Alexandre de Saint Germain
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Pascal Retailleau
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
| | - Jean-Paul Pillot
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Quentin Taulera
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Toulouse INP, 31320 Auzeville-Tolosane, France
| | - Lucile Andna
- Université de Strasbourg, Institut de Chimie, UMR 7177, Équipe Synthèse Organique et Phytochimie, 4 Rue Blaise Pascal CS 90032, 67081 Strasbourg Cedex, France
| | - Laurence Miesch
- Université de Strasbourg, Institut de Chimie, UMR 7177, Équipe Synthèse Organique et Phytochimie, 4 Rue Blaise Pascal CS 90032, 67081 Strasbourg Cedex, France
| | - Soizic Rochange
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Toulouse INP, 31320 Auzeville-Tolosane, France
| | | | - François-Didier Boyer
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
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Yu Y, Xu J, Wang C, Pang Y, Li L, Tang X, Li B, Sun Q. Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses. PeerJ 2022; 10:e13551. [PMID: 35712547 PMCID: PMC9196262 DOI: 10.7717/peerj.13551] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 05/17/2022] [Indexed: 01/17/2023] Open
Abstract
Strigolactones (SLs) are a novel class of plant hormones that play critical roles in regulating various developmental processes and stress tolerance. Although the SL biosynthetic and signaling genes were already determined in some plants such as Arabidopsis and rice, the information of SL-related genes in grapevine (Vitis vinifera L.) remains largely unknown. In this study, the SL-related genes were identified from the whole grapevine genome, and their expression patterns under salt and drought stresses were determined. The results indicated that the five genes that involved in the SL biosynthesis included one each of the D27, CCD7, CCD8, MAX1 and LBO genes, as well as the three genes that involved in the SL signaling included one each of the D14, MAX2, D53 genes. Phylogenetic analysis suggested that these SL-related proteins are highly conserved among different plant species. Promoter analysis showed that the prevalence of a variety of cis-acting elements associated with hormones and abiotic stress existed in the promoter regions of these SL-related genes. Furthermore, the transcription expression analysis demonstrated that most SL-related genes are involved in the salt and drought stresses response in grapevine. These findings provided valuable information for further investigation and functional analysis of SL biosynthetic and signaling genes in response to salt and drought stresses in grapevine.
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Affiliation(s)
- Yanyan Yu
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, China
| | - Jinghao Xu
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, China
| | | | - Yunning Pang
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, China
| | - Lijian Li
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, China
| | - Xinjie Tang
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, China
| | - Bo Li
- Shandong Academy of Grape, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China
| | - Qinghua Sun
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong, China
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20
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de Saint Germain A, Clavé G, Schouveiler P, Pillot JP, Singh AV, Chevalier A, Daignan Fornier S, Guillory A, Bonhomme S, Rameau C, Boyer FD. Expansion of the Strigolactone Profluorescent Probes Repertory: The Right Probe for the Right Application. FRONTIERS IN PLANT SCIENCE 2022; 13:887347. [PMID: 35720613 PMCID: PMC9201908 DOI: 10.3389/fpls.2022.887347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 05/02/2022] [Indexed: 05/29/2023]
Abstract
Strigolactones (SLs) are intriguing phytohormones that not only regulate plant development and architecture but also interact with other organisms in the rhizosphere as root parasitic plants (Striga, Orobanche, and Phelipanche) and arbuscular mycorrhizal fungi. Starting with a pioneering work in 2003 for the isolation and identification of the SL receptor in parasitic weeds, fluorescence labeling of analogs has proven a major strategy to gain knowledge in SL perception and signaling. Here, we present novel chemical tools for understanding the SL perception based on the enzymatic properties of SL receptors. We designed different profluorescent SL Guillaume Clavé (GC) probes and performed structure-activity relationship studies on pea, Arabidopsis thaliana, and Physcomitrium (formerly Physcomitrella) patens. The binding of the GC probes to PsD14/RMS3, AtD14, and OsD14 proteins was tested. We demonstrated that coumarin-based profluorescent probes were highly bioactive and well-adapted to dissect the enzymatic properties of SL receptors in pea and a resorufin profluorescent probe in moss, contrary to the commercially available fluorescein profluorescent probe, Yoshimulactone Green (YLG). These probes offer novel opportunities for the studies of SL in various plants.
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Affiliation(s)
| | - Guillaume Clavé
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, Gif-sur-Yvette, France
| | - Paul Schouveiler
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Jean-Paul Pillot
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Abhay-Veer Singh
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Arnaud Chevalier
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, Gif-sur-Yvette, France
| | - Suzanne Daignan Fornier
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, Gif-sur-Yvette, France
| | - Ambre Guillory
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Sandrine Bonhomme
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Catherine Rameau
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - François-Didier Boyer
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, Gif-sur-Yvette, France
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21
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Molecular Regulation of Arbuscular Mycorrhizal Symbiosis. Int J Mol Sci 2022; 23:ijms23115960. [PMID: 35682640 PMCID: PMC9180548 DOI: 10.3390/ijms23115960] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 05/20/2022] [Accepted: 05/23/2022] [Indexed: 02/07/2023] Open
Abstract
Plant-microorganism interactions at the rhizosphere level have a major impact on plant growth and plant tolerance and/or resistance to biotic and abiotic stresses. Of particular importance for forestry and agricultural systems is the cooperative and mutualistic interaction between plant roots and arbuscular mycorrhizal (AM) fungi from the phylum Glomeromycotina, since about 80% of terrestrial plant species can form AM symbiosis. The interaction is tightly regulated by both partners at the cellular, molecular and genetic levels, and it is highly dependent on environmental and biological variables. Recent studies have shown how fungal signals and their corresponding host plant receptor-mediated signalling regulate AM symbiosis. Host-generated symbiotic responses have been characterized and the molecular mechanisms enabling the regulation of fungal colonization and symbiosis functionality have been investigated. This review summarizes these and other recent relevant findings focusing on the molecular players and the signalling that regulate AM symbiosis. Future progress and knowledge about the underlying mechanisms for AM symbiosis regulation will be useful to facilitate agro-biotechnological procedures to improve AM colonization and/or efficiency.
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Fiorilli V, Forgia M, de Saint Germain A, D’Arrigo G, Cornu D, Le Bris P, Al‐Babili S, Cardinale F, Prandi C, Spyrakis F, Boyer F, Turina M, Lanfranco L. A structural homologue of the plant receptor D14 mediates responses to strigolactones in the fungal phytopathogen Cryphonectria parasitica. THE NEW PHYTOLOGIST 2022; 234:1003-1017. [PMID: 35119708 PMCID: PMC9306968 DOI: 10.1111/nph.18013] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 01/26/2022] [Indexed: 05/27/2023]
Abstract
Strigolactones (SLs) are plant hormones and important signalling molecules required to promote arbuscular mycorrhizal (AM) symbiosis. While in plants an α/β-hydrolase, DWARF14 (D14), was shown to act as a receptor that binds and cleaves SLs, the fungal receptor for SLs is unknown. Since AM fungi are currently not genetically tractable, in this study, we used the fungal pathogen Cryphonectria parasitica, for which gene deletion protocols exist, as a model, as we have previously shown that it responds to SLs. By means of computational, biochemical and genetic analyses, we identified a D14 structural homologue, CpD14. Molecular homology modelling and docking support the prediction that CpD14 interacts with and hydrolyses SLs. The recombinant CpD14 protein shows α/β hydrolytic activity in vitro against the SLs synthetic analogue GR24; its enzymatic activity requires an intact Ser/His/Asp catalytic triad. CpD14 expression in the d14-1 loss-of-function Arabidopsis thaliana line did not rescue the plant mutant phenotype. However, gene inactivation by knockout homologous recombination reduced fungal sensitivity to SLs. These results indicate that CpD14 is involved in SLs responses in C. parasitica and strengthen the role of SLs as multifunctional molecules acting in plant-microbe interactions.
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Affiliation(s)
- Valentina Fiorilli
- Dipartimento di Scienze della Vita e Biologia dei SistemiUniversità di TorinoViale P.A. Mattioli 25Torino10125Italy
| | - Marco Forgia
- Istituto per la Protezione Sostenibile delle Piante – CNRStrada delle Cacce 7310135TorinoItaly
| | | | - Giulia D’Arrigo
- Dipartimento di Scienza e Tecnologia del FarmacoUniversità di Torinovia P. Giuria 1110125TorinoItaly
| | - David Cornu
- CEA, CNRSInstitute for Integrative Biology of the Cell (I2BC)Université Paris‐Saclay1 Avenue de la Terrasse91198Gif‐sur‐YvetteFrance
| | - Philippe Le Bris
- INRAE, AgroParisTechInstitut Jean‐Pierre Bourgin (IJPB)Université Paris‐Saclay78000VersaillesFrance
| | - Salim Al‐Babili
- Division of Biological and Environmental Science and EngineeringKing Abdullah University of Science and TechnologyThuwal23955‐6900Saudi Arabia
| | - Francesca Cardinale
- Dipartimento di Scienze Agrarie, Forestali e AlimentariUniversità di TorinoLargo Braccini 210095GrugliascoItaly
| | - Cristina Prandi
- Dipartimento di ChimicaUniversità di Torinovia P. Giuria 710125TorinoItaly
| | - Francesca Spyrakis
- Dipartimento di Scienza e Tecnologia del FarmacoUniversità di Torinovia P. Giuria 1110125TorinoItaly
| | - François‐Didier Boyer
- CNRSInstitut de Chimie des Substances NaturellesUPR 2301Université Paris‐Saclay1 Avenue de la Terrasse91198Gif‐sur‐YvetteFrance
| | - Massimo Turina
- Istituto per la Protezione Sostenibile delle Piante – CNRStrada delle Cacce 7310135TorinoItaly
| | - Luisa Lanfranco
- Dipartimento di Scienze della Vita e Biologia dei SistemiUniversità di TorinoViale P.A. Mattioli 25Torino10125Italy
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Simkin AJ, Kapoor L, Doss CGP, Hofmann TA, Lawson T, Ramamoorthy S. The role of photosynthesis related pigments in light harvesting, photoprotection and enhancement of photosynthetic yield in planta. PHOTOSYNTHESIS RESEARCH 2022; 152:23-42. [PMID: 35064531 DOI: 10.1007/s11120-021-00892-6] [Citation(s) in RCA: 119] [Impact Index Per Article: 39.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Accepted: 12/13/2021] [Indexed: 05/06/2023]
Abstract
Photosynthetic pigments are an integral and vital part of all photosynthetic machinery and are present in different types and abundances throughout the photosynthetic apparatus. Chlorophyll, carotenoids and phycobilins are the prime photosynthetic pigments which facilitate efficient light absorption in plants, algae, and cyanobacteria. The chlorophyll family plays a vital role in light harvesting by absorbing light at different wavelengths and allowing photosynthetic organisms to adapt to different environments, either in the long-term or during transient changes in light. Carotenoids play diverse roles in photosynthesis, including light capture and as crucial antioxidants to reduce photodamage and photoinhibition. In the marine habitat, phycobilins capture a wide spectrum of light and have allowed cyanobacteria and red algae to colonise deep waters where other frequencies of light are attenuated by the water column. In this review, we discuss the potential strategies that photosynthetic pigments provide, coupled with development of molecular biological techniques, to improve crop yields through enhanced light harvesting, increased photoprotection and improved photosynthetic efficiency.
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Affiliation(s)
- Andrew J Simkin
- School of Biosciences, University of Kent, Canterbury, CT2 7NJ, United Kingdom
| | - Leepica Kapoor
- School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, 632014, Tamil Nadu, India
| | - C George Priya Doss
- School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, 632014, Tamil Nadu, India
| | - Tanja A Hofmann
- OSFC, Scrivener Drive, Pinewood, Ipswich, IP8 3SU, United Kingdom
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, United Kingdom
| | - Siva Ramamoorthy
- School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, 632014, Tamil Nadu, India.
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24
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Satheesh V, Tahir A, Li J, Lei M. Plant phosphate nutrition: sensing the stress. STRESS BIOLOGY 2022; 2:16. [PMID: 37676547 PMCID: PMC10441931 DOI: 10.1007/s44154-022-00039-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Accepted: 01/31/2022] [Indexed: 09/08/2023]
Abstract
Phosphorus (P) is obtained by plants as phosphate (Pi) from the soil and low Pi levels affects plant growth and development. Adaptation to low Pi condition entails sensing internal and external Pi levels and translating those signals to molecular and morphophysiological changes in the plant. In this review, we present findings related to local and systemin Pi sensing with focus the molecular mechanisms behind root system architectural changes and the impact of hormones and epigenetic mechanisms affecting those changes. We also present some of the recent advances in the Pi sensing and signaling mechanisms focusing on inositol pyrophosphate InsP8 and its interaction with SPX domain proteins to regulate the activity of the central regulator of the Pi starvation response, PHR.
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Affiliation(s)
- Viswanathan Satheesh
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602 China
| | - Ayesha Tahir
- Department of Biosciences, COMSATS University Islamabad, Park Road, Islamabad, Pakistan
| | - Jinkai Li
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602 China
- University of Chinese Academy of Sciences, Beijing, 100049 China
| | - Mingguang Lei
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602 China
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25
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Chen X, Chen J, Liao D, Ye H, Li C, Luo Z, Yan A, Zhao Q, Xie K, Li Y, Wang D, Chen J, Chen A, Xu G. Auxin-mediated regulation of arbuscular mycorrhizal symbiosis: A role of SlGH3.4 in tomato. PLANT, CELL & ENVIRONMENT 2022; 45:955-968. [PMID: 34713922 DOI: 10.1111/pce.14210] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 09/22/2021] [Accepted: 10/04/2021] [Indexed: 06/13/2023]
Abstract
Most land plants can establish symbiosis with arbuscular mycorrhizal (AM) fungi to increase fitness to environmental challenges. The development of AM symbiosis is controlled by intricate procedures involving all phytohormones. However, the mechanisms underlying the auxin-mediated regulation of AM symbiosis remains largely unknown. Here, we report that AM colonisation promotes auxin response and indole-3-acetic acid (IAA) accumulation, but downregulates IAA biosynthesis genes in tomato (Solanum lycopersicum). External IAA application modulates the AM symbiosis by promoting arbuscule formation at low concentrations but repressing it at high concentrations. An AM-induced GH3 gene, SlGH3.4, encoding a putative IAA-amido synthetase, negatively regulates mycorrhization via maintaining cellular auxin homoeostasis. Loss of SlGH3.4 function increased free IAA content and arbuscule incidence, while constitutively overexpressing SlGH3.4 in either tomato or rice resulted in decreased IAA content, total colonisation level and arbuscule abundance in mycorrhizal roots. Several auxin-inducible expansin genes involved in AM formation or resistance to pathogen infection were upregulated in slgh3.4 mycorrhizal roots but downregulated in the SlGH3.4-overexpressing plants. Taken together, our results highlight a positive correlation between the endogenous IAA content and mycorrhization level, particularly arbuscule incidence, and suggest that the SlGH3.4-mediated auxin homoeostasis and regulation of expansin genes is involved in finely tuning the AM development.
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Affiliation(s)
- Xiao Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, Guangdong, China
| | - Jiadong Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
- Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences, Wenzhou, Zhejiang, China
| | - Dehua Liao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Hanghang Ye
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Cai Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Zhenzhen Luo
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Anning Yan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Qingchun Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Kun Xie
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Yiting Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
- Key Laboratory of Tobacco Genetic Improvement and Biotechnology, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, China
| | - Dongsheng Wang
- Department of Ecological Environment and Soil Science, Nanjing Institute of Vegetable Science, Nanjing, Jiangsu, China
| | - Jun Chen
- College of Horticulture Technology, Suzhou Polytechnic Institute of Agriculture, Suzhou, Jiangsu, China
| | - Aiqun Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
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26
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Kawada K, Sasaki Y, Asami T, Yajima S, Ito S. Insect growth regulators with hydrazide moiety inhibit strigolactone biosynthesis in rice. JOURNAL OF PESTICIDE SCIENCE 2022; 47:43-46. [PMID: 35414758 PMCID: PMC8931560 DOI: 10.1584/jpestics.d21-063] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 12/26/2021] [Indexed: 06/14/2023]
Abstract
Strigolactones (SLs) are carotenoid-derived plant hormones involved in several growth and developmental processes. Also, SLs are allelochemicals that induce the seed germination of root parasitic plants and the hyphal branching of arbuscular mycorrhizal fungi. In this study, to identify novel lead chemicals that inhibit SL biosynthesis, we evaluated the effect of agrochemicals on SL biosynthesis. We found that the diacylhydrazine insect growth regulator, chromafenozide, reduced the endogenous level of 4-deoxyorobanchol (4DO), a major SL in rice. Furthermore, treatment with the same class of insect growth regulator, methoxyfenozide, also resulted in the reduction of 4DO levels in rice root exudates. These results suggest that chromafenozide and methoxyfenozide are novel lead inhibitors of SL biosynthesis.
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Affiliation(s)
- Kojiro Kawada
- Department of Bioscience, Tokyo University of Agriculture, Setagaya, Tokyo 156–8502, Japan
| | - Yasuyuki Sasaki
- Department of Bioscience, Tokyo University of Agriculture, Setagaya, Tokyo 156–8502, Japan
| | - Tadao Asami
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo 113–8657, Japan
| | - Shunsuke Yajima
- Department of Bioscience, Tokyo University of Agriculture, Setagaya, Tokyo 156–8502, Japan
| | - Shinsaku Ito
- Department of Bioscience, Tokyo University of Agriculture, Setagaya, Tokyo 156–8502, Japan
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27
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Lopez-Obando M, Guillory A, Boyer FD, Cornu D, Hoffmann B, Le Bris P, Pouvreau JB, Delavault P, Rameau C, de Saint Germain A, Bonhomme S. The Physcomitrium (Physcomitrella) patens PpKAI2L receptors for strigolactones and related compounds function via MAX2-dependent and -independent pathways. THE PLANT CELL 2021; 33:3487-3512. [PMID: 34459915 PMCID: PMC8662777 DOI: 10.1093/plcell/koab217] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 08/24/2021] [Indexed: 05/20/2023]
Abstract
In angiosperms, the α/β hydrolase DWARF14 (D14), along with the F-box protein MORE AXILLARY GROWTH2 (MAX2), perceives strigolactones (SL) to regulate developmental processes. The key SL biosynthetic enzyme CAROTENOID CLEAVAGE DIOXYGENASE8 (CCD8) is present in the moss Physcomitrium patens, and PpCCD8-derived compounds regulate moss extension. The PpMAX2 homolog is not involved in the SL response, but 13 PpKAI2LIKE (PpKAI2L) genes homologous to the D14 ancestral paralog KARRIKIN INSENSITIVE2 (KAI2) encode candidate SL receptors. In Arabidopsis thaliana, AtKAI2 perceives karrikins and the elusive endogenous KAI2-Ligand (KL). Here, germination assays of the parasitic plant Phelipanche ramosa suggested that PpCCD8-derived compounds are likely noncanonical SLs. (+)-GR24 SL analog is a good mimic for PpCCD8-derived compounds in P. patens, while the effects of its enantiomer (-)-GR24, a KL mimic in angiosperms, are minimal. Interaction and binding assays of seven PpKAI2L proteins pointed to the stereoselectivity toward (-)-GR24 for a single clade of PpKAI2L (eu-KAI2). Enzyme assays highlighted the peculiar behavior of PpKAI2L-H. Phenotypic characterization of Ppkai2l mutants showed that eu-KAI2 genes are not involved in the perception of PpCCD8-derived compounds but act in a PpMAX2-dependent pathway. In contrast, mutations in PpKAI2L-G, and -J genes abolished the response to the (+)-GR24 enantiomer, suggesting that PpKAI2L-G, and -J proteins are receptors for moss SLs.
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Affiliation(s)
- Mauricio Lopez-Obando
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
- Department of Plant Biology, Swedish University of Agricultural Sciences, The
Linnean Centre for Plant Biology in Uppsala, SE-750 07 Uppsala, Sweden
- VEDAS Corporación de Investigación e Innovación (VEDASCII),
050024 Medellín, Colombia
| | - Ambre Guillory
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
| | - François-Didier Boyer
- Institut de Chimie des Substances Naturelles, CNRS, Université
Paris-Saclay, 91198 Gif-sur-Yvette, France
| | - David Cornu
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université
Paris-Saclay, 91198 Gif-sur-Yvette, France
| | - Beate Hoffmann
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
| | - Philippe Le Bris
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
| | - Jean-Bernard Pouvreau
- Laboratoire de Biologie et Pathologie Végétales, LBPV, Université de
Nantes, 44000 Nantes, France
| | - Philippe Delavault
- Laboratoire de Biologie et Pathologie Végétales, LBPV, Université de
Nantes, 44000 Nantes, France
| | - Catherine Rameau
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
| | - Alexandre de Saint Germain
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
- Author for correspondence:
(S.B.),
(A.d.S.G.)
| | - Sandrine Bonhomme
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université
Paris-Saclay, 78000 Versailles, France
- Author for correspondence:
(S.B.),
(A.d.S.G.)
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28
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Simkin AJ. Carotenoids and Apocarotenoids in Planta: Their Role in Plant Development, Contribution to the Flavour and Aroma of Fruits and Flowers, and Their Nutraceutical Benefits. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112321. [PMID: 34834683 PMCID: PMC8624010 DOI: 10.3390/plants10112321] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 10/22/2021] [Accepted: 10/26/2021] [Indexed: 05/05/2023]
Abstract
Carotenoids and apocarotenoids are diverse classes of compounds found in nature and are important natural pigments, nutraceuticals and flavour/aroma molecules. Improving the quality of crops is important for providing micronutrients to remote communities where dietary variation is often limited. Carotenoids have also been shown to have a significant impact on a number of human diseases, improving the survival rates of some cancers and slowing the progression of neurological illnesses. Furthermore, carotenoid-derived compounds can impact the flavour and aroma of crops and vegetables and are the origin of important developmental, as well as plant resistance compounds required for defence. In this review, we discuss the current research being undertaken to increase carotenoid content in plants and research the benefits to human health and the role of carotenoid derived volatiles on flavour and aroma of fruits and vegetables.
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Affiliation(s)
- Andrew J. Simkin
- School of Biosciences, University of Kent, Canterbury CT2 7NJ, UK; or
- Crop Science and Production Systems, NIAB-EMR, New Road, East Malling, Kent ME19 6BJ, UK
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29
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Wu S, Ma X, Zhou A, Valenzuela A, Zhou K, Li Y. Establishment of strigolactone-producing bacterium-yeast consortium. SCIENCE ADVANCES 2021; 7:eabh4048. [PMID: 34533983 PMCID: PMC8448452 DOI: 10.1126/sciadv.abh4048] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 07/27/2021] [Indexed: 05/28/2023]
Abstract
Strigolactones (SLs) are a class of phytohormones playing diverse roles in plant growth and development, yet the limited access to SLs is largely impeding SL-based foundational investigations and applications. Here, we developed Escherichia coli–Saccharomyces cerevisiae consortia to establish a microbial biosynthetic platform for the synthesis of various SLs, including carlactone, carlactonoic acid, 5-deoxystrigol (5DS; 6.65 ± 1.71 μg/liter), 4-deoxyorobanchol (3.46 ± 0.28 μg/liter), and orobanchol (OB; 19.36 ± 5.20 μg/liter). The SL-producing platform enabled us to conduct functional identification of CYP722Cs from various plants as either OB or 5DS synthase. It also allowed us to quantitatively compare known variants of plant SL biosynthetic enzymes in the microbial system. The titer of 5DS was further enhanced through pathway engineering to 47.3 μg/liter. This work provides a unique platform for investigating SL biosynthesis and evolution and lays the foundation for developing SL microbial production process.
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Affiliation(s)
- Sheng Wu
- Department of Chemical and Environmental Engineering, University of California, Riverside, Riverside, CA 92521, USA
| | - Xiaoqiang Ma
- Disruptive and Sustainable Technologies for Agricultural Precision, Singapore-MIT Alliance for Research and Technology, Singapore, Singapore
| | - Anqi Zhou
- Department of Chemical and Environmental Engineering, University of California, Riverside, Riverside, CA 92521, USA
| | - Alex Valenzuela
- Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Kang Zhou
- Disruptive and Sustainable Technologies for Agricultural Precision, Singapore-MIT Alliance for Research and Technology, Singapore, Singapore
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore, Singapore
| | - Yanran Li
- Department of Chemical and Environmental Engineering, University of California, Riverside, Riverside, CA 92521, USA
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30
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de Saint Germain A, Jacobs A, Brun G, Pouvreau JB, Braem L, Cornu D, Clavé G, Baudu E, Steinmetz V, Servajean V, Wicke S, Gevaert K, Simier P, Goormachtig S, Delavault P, Boyer FD. A Phelipanche ramosa KAI2 protein perceives strigolactones and isothiocyanates enzymatically. PLANT COMMUNICATIONS 2021; 2:100166. [PMID: 34746757 PMCID: PMC8553955 DOI: 10.1016/j.xplc.2021.100166] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 01/25/2021] [Accepted: 01/31/2021] [Indexed: 05/18/2023]
Abstract
Phelipanche ramosa is an obligate root-parasitic weed that threatens major crops in central Europe. In order to germinate, it must perceive various structurally divergent host-exuded signals, including isothiocyanates (ITCs) and strigolactones (SLs). However, the receptors involved are still uncharacterized. Here, we identify five putative SL receptors in P. ramosa and show that PrKAI2d3 is involved in the stimulation of seed germination. We demonstrate the high plasticity of PrKAI2d3, which allows it to interact with different chemicals, including ITCs. The SL perception mechanism of PrKAI2d3 is similar to that of endogenous SLs in non-parasitic plants. We provide evidence that PrKAI2d3 enzymatic activity confers hypersensitivity to SLs. Additionally, we demonstrate that methylbutenolide-OH binds PrKAI2d3 and stimulates P. ramosa germination with bioactivity comparable to that of ITCs. This study demonstrates that P. ramosa has extended its signal perception system during evolution, a fact that should be considered for the development of specific and efficient biocontrol methods.
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Affiliation(s)
| | - Anse Jacobs
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
- Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium
- Center for Medical Biotechnology, VIB, 9000 Ghent, Belgium
| | - Guillaume Brun
- Laboratoire de Biologie et Pathologie Végétales (LBPV), Equipe d’Accueil 1157, Université de Nantes, 44000 Nantes, France
- Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
| | - Jean-Bernard Pouvreau
- Laboratoire de Biologie et Pathologie Végétales (LBPV), Equipe d’Accueil 1157, Université de Nantes, 44000 Nantes, France
| | - Lukas Braem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
- Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium
- Center for Medical Biotechnology, VIB, 9000 Ghent, Belgium
| | - David Cornu
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France
| | - Guillaume Clavé
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
| | - Emmanuelle Baudu
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France
| | - Vincent Steinmetz
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
| | - Vincent Servajean
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
| | - Susann Wicke
- Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
| | - Kris Gevaert
- Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium
- Center for Medical Biotechnology, VIB, 9000 Ghent, Belgium
| | - Philippe Simier
- Laboratoire de Biologie et Pathologie Végétales (LBPV), Equipe d’Accueil 1157, Université de Nantes, 44000 Nantes, France
| | - Sofie Goormachtig
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
| | - Philippe Delavault
- Laboratoire de Biologie et Pathologie Végétales (LBPV), Equipe d’Accueil 1157, Université de Nantes, 44000 Nantes, France
| | - François-Didier Boyer
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
- Corresponding author
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31
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Strigolactones, from Plants to Human Health: Achievements and Challenges. Molecules 2021; 26:molecules26154579. [PMID: 34361731 PMCID: PMC8348160 DOI: 10.3390/molecules26154579] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/24/2021] [Accepted: 07/27/2021] [Indexed: 12/17/2022] Open
Abstract
Strigolactones (SLs) are a class of sesquiterpenoid plant hormones that play a role in the response of plants to various biotic and abiotic stresses. When released into the rhizosphere, they are perceived by both beneficial symbiotic mycorrhizal fungi and parasitic plants. Due to their multiple roles, SLs are potentially interesting agricultural targets. Indeed, the use of SLs as agrochemicals can favor sustainable agriculture via multiple mechanisms, including shaping root architecture, promoting ideal branching, stimulating nutrient assimilation, controlling parasitic weeds, mitigating drought and enhancing mycorrhization. Moreover, over the last few years, a number of studies have shed light onto the effects exerted by SLs on human cells and on their possible applications in medicine. For example, SLs have been demonstrated to play a key role in the control of pathways related to apoptosis and inflammation. The elucidation of the molecular mechanisms behind their action has inspired further investigations into their effects on human cells and their possible uses as anti-cancer and antimicrobial agents.
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32
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Three mutations repurpose a plant karrikin receptor to a strigolactone receptor. Proc Natl Acad Sci U S A 2021; 118:2103175118. [PMID: 34301902 DOI: 10.1073/pnas.2103175118] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Uncovering the basis of small-molecule hormone receptors' evolution is paramount to a complete understanding of how protein structure drives function. In plants, hormone receptors for strigolactones are well suited to evolutionary inquiries because closely related homologs have different ligand preferences. More importantly, because of facile plant transgenic systems, receptors can be swapped and quickly assessed functionally in vivo. Here, we show that only three mutations are required to turn the nonstrigolactone receptor, KAI2, into a receptor that recognizes the plant hormone strigolactone. This modified receptor still retains its native function to perceive KAI2 ligands. Our directed evolution studies indicate that only a few keystone mutations are required to increase receptor promiscuity of KAI2, which may have implications for strigolactone receptor evolution in parasitic plants.
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33
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Changenet V, Macadré C, Boutet-Mercey S, Magne K, Januario M, Dalmais M, Bendahmane A, Mouille G, Dufresne M. Overexpression of a Cytochrome P450 Monooxygenase Involved in Orobanchol Biosynthesis Increases Susceptibility to Fusarium Head Blight. FRONTIERS IN PLANT SCIENCE 2021; 12:662025. [PMID: 33868356 PMCID: PMC8048717 DOI: 10.3389/fpls.2021.662025] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 03/11/2021] [Indexed: 05/28/2023]
Abstract
Fusarium Head Blight (FHB) is a cereal disease caused primarily by the ascomycete fungus Fusarium graminearum with public health issues due to the production of mycotoxins including deoxynivalenol (DON). Genetic resistance is an efficient protection means and numerous quantitative trait loci have been identified, some of them related to the production of resistance metabolites. In this study, we have functionally characterized the Brachypodium distachyon BdCYP711A29 gene encoding a cytochrome P450 monooxygenase (CYP). We showed that BdCYP711A29 belongs to an oligogenic family of five members. However, following infection by F. graminearum, BdCYP711A29 is the only copy strongly transcriptionally induced in a DON-dependent manner. The BdCYP711A29 protein is homologous to the Arabidopsis thaliana MAX1 and Oryza sativa MAX1-like CYPs representing key components of the strigolactone biosynthesis. We show that BdCYP711A29 is likely involved in orobanchol biosynthesis. Alteration of the BdCYP711A29 sequence or expression alone does not modify plant architecture, most likely because of functional redundancy with the other copies. B. distachyon lines overexpressing BdCYP711A29 exhibit an increased susceptibility to F. graminearum, although no significant changes in defense gene expression were detected. We demonstrate that both orobanchol and exudates of Bd711A29 overexpressing lines stimulate the germination of F. graminearum macroconidia. We therefore hypothesize that orobanchol is a susceptibility factor to FHB.
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Affiliation(s)
- Valentin Changenet
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
| | - Catherine Macadré
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
| | - Stéphanie Boutet-Mercey
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - Kévin Magne
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
| | - Mélanie Januario
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
| | - Marion Dalmais
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
| | - Abdelhafid Bendahmane
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
| | - Grégory Mouille
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - Marie Dufresne
- Université Paris-Saclay, CNRS, INRAE, University of Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France
- Université de Paris, Institute of Plant Sciences Paris-Saclay, Orsay, France
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Gujre N, Soni A, Rangan L, Tsang DCW, Mitra S. Sustainable improvement of soil health utilizing biochar and arbuscular mycorrhizal fungi: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 268:115549. [PMID: 33246313 DOI: 10.1016/j.envpol.2020.115549] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 07/18/2020] [Accepted: 08/08/2020] [Indexed: 06/11/2023]
Abstract
Conservation of soil health and crop productivity is the central theme for sustainable agriculture practices. It is unrealistic to expect that the burgeoning crop production demands will be met by a soil ecosystem that is increasingly unhealthy and constrained. Therefore, the present review is focused on soil amendment techniques, using biochar in combination with arbuscular mycorrhizal fungi (AMF), which is an indispensable biotic component that maintains plant-soil continuum. Globally significant progress has been made in elucidating the physical and chemical properties of biochar; along with its role in carbon sequestration. Similarly, research advances on AMF include its evolutionary background, functions, and vital roles in the soil ecosystem. The present review deliberates on the premise that biochar and AMF have the potential to become cardinal to management of agro-ecosystems. The wider perspectives of various agronomical and environmental backgrounds are discussed. The present state of knowledge, different aspects and limitations of combined biochar and AMF applications (BC + AMF), mechanisms of interaction between biochar and AMF, effects on plant growth, challenges and future opportunities of BC + AMF applications are critically reviewed. Given the severely constrained nature of soil health, the roles of BC + AMF in agriculture, bioremediation and ecology have also been examined. In spite of the potential benefits, the functionality and dynamics of BC + AMF in soil are far from being fully elucidated.
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Affiliation(s)
- Nihal Gujre
- Agro-ecotechnology Laboratory, Centre for Rural Technology, Indian Institute of Technology Guwahati (IITG), Guwahati, Assam 781039, India
| | - Ankit Soni
- Agro-ecotechnology Laboratory, Centre for Rural Technology, Indian Institute of Technology Guwahati (IITG), Guwahati, Assam 781039, India
| | - Latha Rangan
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati (IITG), Guwahati, Assam 781039, India
| | - Daniel C W Tsang
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
| | - Sudip Mitra
- Agro-ecotechnology Laboratory, Centre for Rural Technology, Indian Institute of Technology Guwahati (IITG), Guwahati, Assam 781039, India.
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Triflumizole as a Novel Lead Compound for Strigolactone Biosynthesis Inhibitor. Molecules 2020; 25:molecules25235525. [PMID: 33255720 PMCID: PMC7728069 DOI: 10.3390/molecules25235525] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 11/18/2020] [Accepted: 11/23/2020] [Indexed: 12/13/2022] Open
Abstract
Strigolactones (SLs) are carotenoid-derived plant hormones involved in the development of various plants. SLs also stimulate seed germination of the root parasitic plants, Striga spp. and Orobanche spp., which reduce crop yield. Therefore, regulating SL biosynthesis may lessen the damage of root parasitic plants. Biosynthetic inhibitors effectively control biological processes by targeted regulation of biologically active compounds. In addition, biosynthetic inhibitors regulate endogenous levels in developmental stage- and tissue-specific manners. To date, although some chemicals have been found as SL biosynthesis inhibitor, these are derived from only three lead chemicals. In this study, to find a novel lead chemical for SL biosynthesis inhibitor, 27 nitrogen-containing heterocyclic derivatives were screened for inhibition of SL biosynthesis. Triflumizole most effectively reduced the levels of rice SL, 4-deoxyorobanchol (4DO), in root exudates. In addition, triflumizole inhibited endogenous 4DO biosynthesis in rice roots by inhibiting the enzymatic activity of Os900, a rice enzyme that converts the SL intermediate carlactone to 4DO. A Striga germination assay revealed that triflumizole-treated rice displayed a reduced level of germination stimulation for Striga. These results identify triflumizole as a novel lead compound for inhibition of SL biosynthesis.
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Chaturvedi R, Giri M, Chowdhury Z, Venables BJ, Mohanty D, Petros RA, Shah J. CYP720A1 function in roots is required for flowering time and systemic acquired resistance in the foliage of Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:6612-6622. [PMID: 32793967 DOI: 10.1093/jxb/eraa374] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Accepted: 08/04/2020] [Indexed: 06/11/2023]
Abstract
Systemic acquired resistance (SAR) is an inducible defense mechanism that systemically enhances resistance against pathogens in foliar tissues. SAR, which engages salicylic acid (SA) signaling, shares molecular components with the autonomous pathway, which is involved in controlling flowering time in Arabidopsis thaliana. FLOWERING LOCUS D (FLD) is one such autonomous pathway component that is required for flowering time and the systemic accumulation of SA during SAR. Here, we show that CYP720A1, a putative cytochrome P450 monoxygenase, controls FLD expression and is required for the timing of flowering and the manifestation of SAR. The delayed flowering time in the cyp720a1 mutant correlated with the elevated transcript level of the floral repressor FLC, while the SAR deficiency phenotype of the cyp720a1 mutant correlated with the inability to systemically accumulate SA. CYP720A1 transcript abundance in shoots is poor compared with roots. Reciprocal root-shoot grafting confirmed that CYP720A1 function in the roots is critical for flowering time and SAR. We therefore suggest that root to shoot communication involving a CYP720A1-dependent factor contributes to the timing of reproductive development and defense in the foliage.
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Affiliation(s)
- Ratnesh Chaturvedi
- Department of Biological Sciences, University of North Texas, Denton, TX, USA
- BioDiscovery Institute, University of North Texas, Denton, TX, USA
| | - Mrunmay Giri
- Department of Biological Sciences, University of North Texas, Denton, TX, USA
- BioDiscovery Institute, University of North Texas, Denton, TX, USA
| | - Zulkarnain Chowdhury
- Department of Biological Sciences, University of North Texas, Denton, TX, USA
- BioDiscovery Institute, University of North Texas, Denton, TX, USA
| | - Barney J Venables
- Department of Biological Sciences, University of North Texas, Denton, TX, USA
- Advanced Environmental Research Institute, University of North Texas, Denton, TX, USA
| | - Devasantosh Mohanty
- Department of Biological Sciences, University of North Texas, Denton, TX, USA
- BioDiscovery Institute, University of North Texas, Denton, TX, USA
| | - Robby A Petros
- Department of Chemistry, University of North Texas, Denton, TX, USA
| | - Jyoti Shah
- Department of Biological Sciences, University of North Texas, Denton, TX, USA
- BioDiscovery Institute, University of North Texas, Denton, TX, USA
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Wang L, Hart BE, Khan GA, Cruz ER, Persson S, Wallace IS. Associations between phytohormones and cellulose biosynthesis in land plants. ANNALS OF BOTANY 2020; 126:807-824. [PMID: 32619216 PMCID: PMC7539351 DOI: 10.1093/aob/mcaa121] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 07/01/2020] [Indexed: 05/10/2023]
Abstract
BACKGROUND Phytohormones are small molecules that regulate virtually every aspect of plant growth and development, from basic cellular processes, such as cell expansion and division, to whole plant environmental responses. While the phytohormone levels and distribution thus tell the plant how to adjust itself, the corresponding growth alterations are actuated by cell wall modification/synthesis and internal turgor. Plant cell walls are complex polysaccharide-rich extracellular matrixes that surround all plant cells. Among the cell wall components, cellulose is typically the major polysaccharide, and is the load-bearing structure of the walls. Hence, the cell wall distribution of cellulose, which is synthesized by large Cellulose Synthase protein complexes at the cell surface, directs plant growth. SCOPE Here, we review the relationships between key phytohormone classes and cellulose deposition in plant systems. We present the core signalling pathways associated with each phytohormone and discuss the current understanding of how these signalling pathways impact cellulose biosynthesis with a particular focus on transcriptional and post-translational regulation. Because cortical microtubules underlying the plasma membrane significantly impact the trajectories of Cellulose Synthase Complexes, we also discuss the current understanding of how phytohormone signalling impacts the cortical microtubule array. CONCLUSION Given the importance of cellulose deposition and phytohormone signalling in plant growth and development, one would expect that there is substantial cross-talk between these processes; however, mechanisms for many of these relationships remain unclear and should be considered as the target of future studies.
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Affiliation(s)
- Liu Wang
- School of Biosciences, University of Melbourne, Parkville, Victoria, Australia
| | - Bret E Hart
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA
| | | | - Edward R Cruz
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA
| | - Staffan Persson
- School of Biosciences, University of Melbourne, Parkville, Victoria, Australia
| | - Ian S Wallace
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA
- Department of Chemistry, University of Nevada, Reno, Nevada, USA
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38
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Aliche EB, Screpanti C, De Mesmaeker A, Munnik T, Bouwmeester HJ. Science and application of strigolactones. THE NEW PHYTOLOGIST 2020; 227:1001-1011. [PMID: 32067235 PMCID: PMC7384091 DOI: 10.1111/nph.16489] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 02/11/2020] [Indexed: 05/16/2023]
Abstract
Strigolactones (SLs) represent a class of plant hormones that regulate developmental processes and play a role in the response of plants to various biotic and abiotic stresses. Both in planta hormonal roles and ex planta signalling effects of SLs are potentially interesting agricultural targets. In this review, we explore various aspects of SL function and highlight distinct areas of agriculture that may benefit from the use of synthetic SL analogues, and we identify possible bottlenecks. Our objective is to identify where the contributions of science and stakeholders are still needed to achieve harnessing the benefits of SLs for a sustainable agriculture of the near future.
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Affiliation(s)
- Ernest B. Aliche
- Plant Hormone BiologySwammerdam Institute for Life SciencesUniversity of AmsterdamScience Park 904Amsterdam1098 XHthe Netherlands
| | - Claudio Screpanti
- Chemical ResearchSyngenta Crop Protection AGSchaffhausenstrasse 101CH‐4332SteinSwitzerland
| | - Alain De Mesmaeker
- Chemical ResearchSyngenta Crop Protection AGSchaffhausenstrasse 101CH‐4332SteinSwitzerland
| | - Teun Munnik
- Plant Cell BiologySwammerdam Institute for Life SciencesUniversity of AmsterdamScience Park 904Amsterdam1098 XHthe Netherlands
| | - Harro J. Bouwmeester
- Plant Hormone BiologySwammerdam Institute for Life SciencesUniversity of AmsterdamScience Park 904Amsterdam1098 XHthe Netherlands
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Taulera Q, Lauressergues D, Martin K, Cadoret M, Servajean V, Boyer FD, Rochange S. Initiation of arbuscular mycorrhizal symbiosis involves a novel pathway independent from hyphal branching. MYCORRHIZA 2020; 30:491-501. [PMID: 32506172 DOI: 10.1007/s00572-020-00965-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 05/18/2020] [Indexed: 06/11/2023]
Abstract
The arbuscular mycorrhizal symbiosis is a very common association between plant roots and soil fungi, which greatly contributes to plant nutrition. Root-exuded compounds known as strigolactones act as symbiotic signals stimulating the fungus prior to root colonization. Strigolactones also play an endogenous role in planta as phytohormones and contribute to the regulation of various developmental traits. Structure-activity relationship studies have revealed both similarities and differences between the structural features required for bioactivity in plants and arbuscular mycorrhizal fungi. In the latter case, bioassays usually measured a stimulation of hyphal branching on isolated fungi of the Gigaspora genus, grown in vitro. Here, we extended these investigations with a bioassay that evaluates the bioactivity of strigolactone analogs in a symbiotic situation and the use of the model mycorrhizal fungus Rhizophagus irregularis. Some general structural requirements for bioactivity reported previously for Gigaspora were confirmed. We also tested additional strigolactone analogs bearing modifications on the conserved methylbutenolide ring, a key element of strigolactone perception by plants. A strigolactone analog with an unmethylated butenolide ring could enhance the ability of R. irregularis to colonize host roots. Surprisingly, when applied to the isolated fungus in vitro, this compound stimulated germ tube elongation but inhibited hyphal branching. Therefore, this compound was able to act on the fungal and/or plant partner to facilitate initiation of the arbuscular mycorrhizal symbiosis, independently from hyphal branching and possibly from the strigolactone pathway.
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Affiliation(s)
- Quentin Taulera
- Laboratoire de Recherche en Sciences Végétales, CNRS, Université de Toulouse, UPS, 24 chemin de Borde Rouge, Auzeville, 31320, Castanet-Tolosan, France
| | - Dominique Lauressergues
- Laboratoire de Recherche en Sciences Végétales, CNRS, Université de Toulouse, UPS, 24 chemin de Borde Rouge, Auzeville, 31320, Castanet-Tolosan, France
| | - Katie Martin
- Laboratoire de Recherche en Sciences Végétales, CNRS, Université de Toulouse, UPS, 24 chemin de Borde Rouge, Auzeville, 31320, Castanet-Tolosan, France
| | - Maïna Cadoret
- Laboratoire de Recherche en Sciences Végétales, CNRS, Université de Toulouse, UPS, 24 chemin de Borde Rouge, Auzeville, 31320, Castanet-Tolosan, France
| | - Vincent Servajean
- CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, UPR 2301, 91198, Gif-sur-Yvette, France
| | - François-Didier Boyer
- CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, UPR 2301, 91198, Gif-sur-Yvette, France
| | - Soizic Rochange
- Laboratoire de Recherche en Sciences Végétales, CNRS, Université de Toulouse, UPS, 24 chemin de Borde Rouge, Auzeville, 31320, Castanet-Tolosan, France.
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40
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Yoneyama K. Recent progress in the chemistry and biochemistry of strigolactones. JOURNAL OF PESTICIDE SCIENCE 2020; 45:45-53. [PMID: 32508512 PMCID: PMC7251197 DOI: 10.1584/jpestics.d19-084] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Strigolactones (SLs) are plant secondary metabolites derived from carotenoids. SLs play important roles in the regulation of plant growth and development in planta and coordinate interactions between plants and other organisms including root parasitic plants, and symbiotic and pathogenic microbes in the rhizosphere. In the 50 years since the discovery of the first SL, strigol, our knowledge about the chemistry and biochemistry of SLs has advanced explosively, especially over the last two decades. In this review, recent advances in the chemistry and biology of SLs are summarized and possible future outcomes are discussed.
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Affiliation(s)
- Koichi Yoneyama
- Women’s Future Development Center, Ehime University, 3 Bunkyo-cho, Matsuyama 790–8577, Japan
- To whom correspondence should be addressed. E-mail:
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41
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Oldroyd GED, Leyser O. A plant's diet, surviving in a variable nutrient environment. Science 2020; 368:368/6486/eaba0196. [PMID: 32241923 DOI: 10.1126/science.aba0196] [Citation(s) in RCA: 214] [Impact Index Per Article: 42.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Accepted: 02/14/2020] [Indexed: 12/19/2022]
Abstract
As primary producers, plants rely on a large aboveground surface area to collect carbon dioxide and sunlight and a large underground surface area to collect the water and mineral nutrients needed to support their growth and development. Accessibility of the essential nutrients nitrogen (N) and phosphorus (P) in the soil is affected by many factors that create a variable spatiotemporal landscape of their availability both at the local and global scale. Plants optimize uptake of the N and P available through modifications to their growth and development and engagement with microorganisms that facilitate their capture. The sensing of these nutrients, as well as the perception of overall nutrient status, shapes the plant's response to its nutrient environment, coordinating its development with microbial engagement to optimize N and P capture and regulate overall plant growth.
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Affiliation(s)
- Giles E D Oldroyd
- Sainsbury Laboratory, University of Cambridge, 47 Bateman Street, Cambridge CB2 1LR, UK. .,Crop Science Centre, University of Cambridge, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK
| | - Ottoline Leyser
- Sainsbury Laboratory, University of Cambridge, 47 Bateman Street, Cambridge CB2 1LR, UK
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42
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de Saint Germain A, Retailleau P, Norsikian S, Servajean V, Pelissier F, Steinmetz V, Pillot JP, Rochange S, Pouvreau JB, Boyer FD. Contalactone, a contaminant formed during chemical synthesis of the strigolactone reference GR24 is also a strigolactone mimic. PHYTOCHEMISTRY 2019; 168:112112. [PMID: 31499274 DOI: 10.1016/j.phytochem.2019.112112] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 08/28/2019] [Accepted: 08/28/2019] [Indexed: 05/10/2023]
Abstract
Strigolactone (SL) plant hormones control plant architecture and are key players in both symbiotic and parasitic interactions. GR24, a synthetic SL analog, is the worldwide reference compound used in all bioassays for investigating the role of SLs in plant development and in rhizospheric interactions. In 2012, the first characterization of the SL receptor reported the detection of an unknown compound after incubation of GR24 samples with the SL receptor. We reveal here the origin of this compound (P270), which comes from a by-product formed during GR24 chemical synthesis. We present the identification of this by-product, named contalactone. A proposed chemical pathway for its formation is provided as well as an evaluation of its bioactivity on pea, Arabidopsis, root parasitic plant seeds and AM fungi, characterizing it as a SL mimic. Quality of GR24 samples can be easily checked by carrying out microscale hydrolysis in a basic aqueous medium to easily detect P270 as indicator of the presence of the contalactone impurity. In all cases, before being used for bioassays, GR24 must be careful purified by preparative HPLC.
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Affiliation(s)
- Alexandre de Saint Germain
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, 78000, Versailles, France.
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Av. de la Terrasse, F-91198, Gif-sur-Yvette, France.
| | - Stéphanie Norsikian
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Av. de la Terrasse, F-91198, Gif-sur-Yvette, France.
| | - Vincent Servajean
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Av. de la Terrasse, F-91198, Gif-sur-Yvette, France.
| | - Franck Pelissier
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Av. de la Terrasse, F-91198, Gif-sur-Yvette, France.
| | - Vincent Steinmetz
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Av. de la Terrasse, F-91198, Gif-sur-Yvette, France.
| | - Jean-Paul Pillot
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, 78000, Versailles, France.
| | - Soizic Rochange
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 Chemin de Borde Rouge, Auzeville, BP42617, 31326, Castanet Tolosan, France.
| | - Jean-Bernard Pouvreau
- Université de Nantes, Laboratoire de Biologie et Pathologie Végétales, LBPV, EA 1157, F-44000, Nantes, France.
| | - François-Didier Boyer
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, 78000, Versailles, France; Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Av. de la Terrasse, F-91198, Gif-sur-Yvette, France.
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43
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Ravazzolo L, Trevisan S, Manoli A, Boutet-Mercey SP, Perreau FO, Quaggiotti S. The Control of Zealactone Biosynthesis and Exudation is Involved in the Response to Nitrogen in Maize Root. PLANT & CELL PHYSIOLOGY 2019; 60:2100-2112. [PMID: 31147714 DOI: 10.1093/pcp/pcz108] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Accepted: 05/22/2019] [Indexed: 06/09/2023]
Abstract
Nitrate acts as a signal in regulating plant development in response to environment. In particular nitric oxide, auxin and strigolactones (SLs) were supposed to cooperate to regulate the maize root response to this anion. In this study, a combined approach based on liquid chromatography-quadrupole/time-of-flight tandem mass spectrometry and on physiological and molecular analyses was adopted to specify the involvement of SLs in the maize response to N. Our results showed that N deficiency strongly induces SL exudation, likely through stimulating their biosynthesis. Nitrate provision early counteracts and also ammonium lowers SL exudation, but less markedly. Exudates obtained from N-starved and ammonium-provided seedlings stimulated Phelipanche germination, whereas when seeds were treated with exudates harvested from nitrate-provided plants no germination was observed. Furthermore, our findings support the idea that the inhibition of SL production observed in response to nitrate and ammonium would contribute to the regulation of lateral root development. Moreover, the transcriptional regulation of a gene encoding a putative maize WBC transporter, in response to various nitrogen supplies, together with its mRNA tissue localization, supported its role in SL allocation. Our results highlight the dual role of SLs as molecules able to signal outwards a nutritional need and as endogenous regulators of root architecture adjustments to N, thus synchronizing plant growth with nitrogen acquisition.
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Affiliation(s)
- Laura Ravazzolo
- Department of Agronomy, Food, Natural resources, Animals and Environment, DAFNAE, University of Padova, Viale dell'Universit� 16, Legnaro, Padova, Italy
| | - Sara Trevisan
- Department of Agronomy, Food, Natural resources, Animals and Environment, DAFNAE, University of Padova, Viale dell'Universit� 16, Legnaro, Padova, Italy
| | - Alessandro Manoli
- Department of Agronomy, Food, Natural resources, Animals and Environment, DAFNAE, University of Padova, Viale dell'Universit� 16, Legnaro, Padova, Italy
| | - Stï Phanie Boutet-Mercey
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit� Paris-Saclay, Versailles, France
| | - Franï Ois Perreau
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit� Paris-Saclay, Versailles, France
| | - Silvia Quaggiotti
- Department of Agronomy, Food, Natural resources, Animals and Environment, DAFNAE, University of Padova, Viale dell'Universit� 16, Legnaro, Padova, Italy
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44
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Bahadur A, Batool A, Nasir F, Jiang S, Mingsen Q, Zhang Q, Pan J, Liu Y, Feng H. Mechanistic Insights into Arbuscular Mycorrhizal Fungi-Mediated Drought Stress Tolerance in Plants. Int J Mol Sci 2019; 20:E4199. [PMID: 31461957 PMCID: PMC6747277 DOI: 10.3390/ijms20174199] [Citation(s) in RCA: 96] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Revised: 08/03/2019] [Accepted: 08/14/2019] [Indexed: 12/28/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) establish symbiotic interaction with 80% of known land plants. It has a pronounced impact on plant growth, water absorption, mineral nutrition, and protection from abiotic stresses. Plants are very dynamic systems having great adaptability under continuously changing drying conditions. In this regard, the function of AMF as a biological tool for improving plant drought stress tolerance and phenotypic plasticity, in terms of establishing mutualistic associations, seems an innovative approach towards sustainable agriculture. However, a better understanding of these complex interconnected signaling pathways and AMF-mediated mechanisms that regulate the drought tolerance in plants will enhance its potential application as an innovative approach in environmentally friendly agriculture. This paper reviews the underlying mechanisms that are confidently linked with plant-AMF interaction in alleviating drought stress, constructing emphasis on phytohormones and signaling molecules and their interaction with biochemical, and physiological processes to maintain the homeostasis of nutrient and water cycling and plant growth performance. Likewise, the paper will analyze how the AMF symbiosis helps the plant to overcome the deleterious effects of stress is also evaluated. Finally, we review how interactions between various signaling mechanisms governed by AMF symbiosis modulate different physiological responses to improve drought tolerance. Understanding the AMF-mediated mechanisms that are important for regulating the establishment of the mycorrhizal association and the plant protective responses towards unfavorable conditions will open new approaches to exploit AMF as a bioprotective tool against drought.
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Affiliation(s)
- Ali Bahadur
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Asfa Batool
- State Key Laboratory of Grassland Agro-ecosystems, Institute of Arid Agroecology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- MOE Key Laboratory of Western China's Environmental Systems, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
| | - Fahad Nasir
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun 130024, China
| | - Shengjin Jiang
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Qin Mingsen
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Qi Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Jianbin Pan
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Yongjun Liu
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Huyuan Feng
- MOE Key Laboratory of Cell Activities and Stress Adaptation, School of Life Sciences, Lanzhou University, Lanzhou 730000, China.
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Shiratake K, Notaguchi M, Makino H, Sawai Y, Borghi L. Petunia PLEIOTROPIC DRUG RESISTANCE 1 Is a Strigolactone Short-Distance Transporter with Long-Distance Outcomes. PLANT & CELL PHYSIOLOGY 2019; 60:1722-1733. [PMID: 31076773 DOI: 10.1093/pcp/pcz081] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 04/25/2019] [Indexed: 05/08/2023]
Abstract
Phytohormones of the strigolactone (SL) family have been characterized as negative regulators of lateral bud outgrowth and triggers of symbioses between plants and mycorrhizal fungi. SLs and their precursors are synthesized in root tips as well as along shoot and root vasculature; they either move shoot-wards and regulate plant architecture or are exuded from roots into the soil to establish mycorrhizal symbiosis. Owing to the difficulty in quantification of SL in shoot tissues because of low abundance, it is not yet clear how SL distribution in plants is regulated at short- and long-distances from SL biosynthetic and target tissues. To address this question, we grafted wild-type scions and rootstocks from different petunia mutants for SL biosynthesis/transport and investigated SL activity by quantifying lateral bud outgrowth in the main shoot. Based on these results, we show that (i) the previously reported petunia SL transporter PLEIOTROPIC DRUG RESISTANCE 1 (PDR1) directly accounts for short-distance SL transport and (ii) long-distance transport of SLs seems to be partially and not directly dependent on PDR1. These data suggest that the root-to-shoot transport of SLs occurs either via the vasculature bundle through transporters other than PDR1 or involves SL precursors that are not substrates of PDR1.
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Affiliation(s)
- Katsuhiro Shiratake
- Laboratory of Horticultural Science, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan
| | - Michitaka Notaguchi
- Laboratory of Horticultural Science, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan
- JST PRESTO, Chikusa, Nagoya, Japan
| | - Haruko Makino
- Laboratory of Horticultural Science, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan
| | - Yu Sawai
- Laboratory of Horticultural Science, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan
| | - Lorenzo Borghi
- Institute of Plant and Microbial Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland
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Kawada K, Takahashi I, Arai M, Sasaki Y, Asami T, Yajima S, Ito S. Synthesis and Biological Evaluation of Novel Triazole Derivatives as Strigolactone Biosynthesis Inhibitors. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:6143-6149. [PMID: 31083983 DOI: 10.1021/acs.jafc.9b01276] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Strigolactones (SLs) are one of the plant hormones that control several important agronomic traits, such as shoot branching, leaf senescence, and stress tolerance. Manipulation of the SL biosynthesis can increase the crop yield. We previously reported that a triazole derivative, TIS108, inhibits SL biosynthesis. In this study, we synthesized a number of novel TIS108 derivatives. Structure-activity relationship studies revealed that 4-(2-phenoxyethoxy)-1-phenyl-2-(1 H-1,2,4-triazol-1-yl)butan-1-one (KK5) inhibits the level of 4-deoxyorobanchol in roots more strongly than TIS108. We further found that KK5-treated Arabidopsis showed increased branching phenotype with the upregulated gene expression of AtMAX3 and AtMAX4. These results indicate that KK5 is a specific SL biosynthesis inhibitor in rice and Arabidopsis.
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Affiliation(s)
- Kojiro Kawada
- Department of Bioscience , Tokyo University of Agriculture , 1-1-1 Sakuragaoka , Setagaya, Tokyo 156-8502 , Japan
| | - Ikuo Takahashi
- Department of Applied Biological Chemistry , The University of Tokyo , 1-1-1 Yayoi , Bunkyo, Tokyo 113-8657 , Japan
| | - Minori Arai
- Department of Bioscience , Tokyo University of Agriculture , 1-1-1 Sakuragaoka , Setagaya, Tokyo 156-8502 , Japan
| | - Yasuyuki Sasaki
- Department of Bioscience , Tokyo University of Agriculture , 1-1-1 Sakuragaoka , Setagaya, Tokyo 156-8502 , Japan
| | - Tadao Asami
- Department of Applied Biological Chemistry , The University of Tokyo , 1-1-1 Yayoi , Bunkyo, Tokyo 113-8657 , Japan
- Core Research for Evolutional Science and Technology (CREST) , Japan Science and Technology Agency (JST) , 4-1-8 Honcho , Kawaguchi , Saitama 332-0012 , Japan
- Department of Biochemistry , King Abdulaziz University , Jeddah , Saudi Arabia
| | - Shunsuke Yajima
- Department of Bioscience , Tokyo University of Agriculture , 1-1-1 Sakuragaoka , Setagaya, Tokyo 156-8502 , Japan
| | - Shinsaku Ito
- Department of Bioscience , Tokyo University of Agriculture , 1-1-1 Sakuragaoka , Setagaya, Tokyo 156-8502 , Japan
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47
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Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B. MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis. MOLECULAR PLANT 2019; 12:879-892. [PMID: 30639314 DOI: 10.1016/j.molp.2019.01.003] [Citation(s) in RCA: 291] [Impact Index Per Article: 48.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 12/14/2018] [Accepted: 01/01/2019] [Indexed: 05/18/2023]
Abstract
Genome sequences from over 200 plant species have already been published, with this number expected to increase rapidly due to advances in sequencing technologies. Once a new genome has been assembled and the genes identified, the functional annotation of their putative translational products, proteins, using ontologies is of key importance as it places the sequencing data in a biological context. Furthermore, to keep pace with rapid production of genome sequences, this functional annotation process must be fully automated. Here we present a redesigned and significantly enhanced MapMan4 framework, together with a revised version of the associated online Mercator annotation tool. Compared with the original MapMan, the new ontology has been expanded almost threefold and enforces stricter assignment rules. This framework was then incorporated into Mercator4, which has been upgraded to reflect current knowledge across the land plant group, providing protein annotations for all embryophytes with a comparably high quality. The annotation process has been optimized to allow a plant genome to be annotated in a matter of minutes. The output results continue to be compatible with the established MapMan desktop application.
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Affiliation(s)
- Rainer Schwacke
- Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany
| | - Gabriel Y Ponce-Soto
- Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany
| | - Kirsten Krause
- Department of Arctic and Marine Biology, The Arctic University of Norway, Biology Building, 9037 Tromsø, Norway
| | - Anthony M Bolger
- Institute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg, RWTH Aachen University, 52074 Aachen, Germany
| | - Borjana Arsova
- Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany
| | - Asis Hallab
- Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany
| | - Kristina Gruden
- National Institute of Biology, Department of Biotechnology and Systems Biology, Večna Pot 111, 1000 Ljubljana, Slovenia
| | - Mark Stitt
- Max Planck Institute for Molecular Plant Physiology, Department of Systems Regulation, 14476 Potsdam-Golm, Germany
| | - Marie E Bolger
- Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany.
| | - Björn Usadel
- Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany; Institute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg, RWTH Aachen University, 52074 Aachen, Germany
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48
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Van Overtveldt M, Braem L, Struk S, Kaczmarek AM, Boyer FD, Van Deun R, Gevaert K, Goormachtig S, Heugebaert TSA, Stevens CV. Design and visualization of second-generation cyanoisoindole-based fluorescent strigolactone analogs. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 98:165-180. [PMID: 30552776 DOI: 10.1111/tpj.14197] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2018] [Revised: 11/22/2018] [Accepted: 12/04/2018] [Indexed: 06/09/2023]
Abstract
Strigolactones (SLs) are a family of terpenoid allelochemicals that were recognized as plant hormones only a decade ago. They influence a myriad of both above- and below-ground developmental processes, and are an important survival strategy for plants in nutrient-deprived soils. A rapidly emerging approach to gain knowledge on hormone signaling is the use of traceable analogs. A unique class of labeled SL analogs was constructed, in which the original tricyclic lactone moiety of natural SLs is replaced by a fluorescent cyanoisoindole ring system. Biological evaluation as parasitic seed germination stimulant and hypocotyl elongation repressor proved the potency of the cyanoisoindole strigolactone analogs (CISAs) to be comparable to the commonly accepted standard GR24. Additionally, via a SMXL6 protein degradation assay, we provided molecular evidence that the compounds elicit SL-like responses through the natural signaling cascade. All CISAs were shown to exhibit fluorescent properties, and the high quantum yield and Stokes shift of the pyrroloindole derivative CISA-7 also enabled in vivo visualization in plants. In contrast to the previously reported fluorescent analogs, CISA-7 displays a large similarity in shape and structure with natural SLs, which renders the analog a promising tracer to investigate the spatiotemporal distribution of SLs in plants and fungi.
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Affiliation(s)
- Melissa Van Overtveldt
- SynBioC Research Group, Department of Green Chemistry and Technology, Campus Coupure, Ghent University, Coupure Links 653, 9000, Ghent, Belgium
| | - Lukas Braem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Technologiepark 927, 9052, Ghent, Belgium
- Department of Biochemistry, Ghent University, Albert Baertsoenkaai 3, 9000, Ghent, Belgium
- Center for Medical Biotechnology, VIB, Albert Baertsoenkaai 3, 9000, Ghent, Belgium
| | - Sylwia Struk
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Technologiepark 927, 9052, Ghent, Belgium
| | - Anna M Kaczmarek
- Luminescent Lanthanide Lab, Department of Chemistry, Ghent University, Krijgslaan 281 - S3, 9000, Ghent, Belgium
| | - François-Didier Boyer
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, RD10, 78026, Versailles, France
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris-Sud, Université Paris-Saclay, 1 Avenue de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Rik Van Deun
- Luminescent Lanthanide Lab, Department of Chemistry, Ghent University, Krijgslaan 281 - S3, 9000, Ghent, Belgium
| | - Kris Gevaert
- Department of Biochemistry, Ghent University, Albert Baertsoenkaai 3, 9000, Ghent, Belgium
- Center for Medical Biotechnology, VIB, Albert Baertsoenkaai 3, 9000, Ghent, Belgium
| | - Sofie Goormachtig
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Technologiepark 927, 9052, Ghent, Belgium
| | - Thomas S A Heugebaert
- SynBioC Research Group, Department of Green Chemistry and Technology, Campus Coupure, Ghent University, Coupure Links 653, 9000, Ghent, Belgium
| | - Christian V Stevens
- SynBioC Research Group, Department of Green Chemistry and Technology, Campus Coupure, Ghent University, Coupure Links 653, 9000, Ghent, Belgium
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49
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Luo L, Takahashi M, Kameoka H, Qin R, Shiga T, Kanno Y, Seo M, Ito M, Xu G, Kyozuka J. Developmental analysis of the early steps in strigolactone-mediated axillary bud dormancy in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 97:1006-1021. [PMID: 30740793 PMCID: PMC6850044 DOI: 10.1111/tpj.14266] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Revised: 01/22/2019] [Accepted: 01/23/2019] [Indexed: 05/15/2023]
Abstract
By contrast with rapid progress in understanding the mechanisms of biosynthesis and signaling of strigolactone (SL), mechanisms by which SL inhibits axillary bud outgrowth are less well understood. We established a rice (Oryza sativa L.) hydroponic culture system to observe axillary buds at the critical point when the buds enter the dormant state. In situ hybridization analysis indicated that cell division stops in the leaf primordia of the buds entering dormancy. We compared transcriptomes in the axillary buds isolated by laser capture microdissection before and after entering the dormant state and identified genes that are specifically upregulated or downregulated in dormant buds respectively, in SL-mediated axillary bud dormancy. Typically, cell cycle genes and ribosomal genes are included among the active genes while abscisic acid (ABA)-inducible genes are among the dormant genes. Application of ABA to the hydroponic culture suppressed the growth of axillary buds of SL mutants to the same level as wild-type (WT) buds. Tiller number was decreased in the transgenic lines overexpressing OsNCED1, the gene that encodes ABA biosynthesis enzyme. These results indicated that the main site of SL function is the leaf primordia in the axillary bud and that ABA is involved in SL-mediated axillary bud dormancy.
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Affiliation(s)
- Le Luo
- State Key Laboratory of Crop Genetics and Germplasm EnhancementNanjing Agricultural UniversityNanjing210095China
- Graduate School of Agriculture and Life SciencesUniversity of TokyoYayoi, BunkyoTokyo113‐8657Japan
| | - Megumu Takahashi
- Graduate School of Agriculture and Life SciencesUniversity of TokyoYayoi, BunkyoTokyo113‐8657Japan
- Present address:
Institute of Vegetable and Floriculture ScienceNAROTsukuba305‐8519Japan
| | - Hiromu Kameoka
- Graduate School of Agriculture and Life SciencesUniversity of TokyoYayoi, BunkyoTokyo113‐8657Japan
- Present address:
Division of Symbiotic SystemsNational Institute for Basic Biology38 Nishigonaka, MyodaijiOkazakiAichi444‐8585Japan
| | - Ruyi Qin
- State Key Laboratory of Crop Genetics and Germplasm EnhancementNanjing Agricultural UniversityNanjing210095China
| | - Toshihide Shiga
- Graduate School of Life SciencesTohoku UniversityKatahira 2‐1‐1, Aoba‐kuSendai980‐8577Japan
| | - Yuri Kanno
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro‐cho, Tsurumi‐kuYokohama230‐0045Japan
| | - Mitsunori Seo
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro‐cho, Tsurumi‐kuYokohama230‐0045Japan
| | - Masaki Ito
- Division of Biological ScienceGraduate School of Bioagricultural SciencesNagoya UniversityFuro‐cho, Chikusa‐kuNagoya464‐8601Japan
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm EnhancementNanjing Agricultural UniversityNanjing210095China
| | - Junko Kyozuka
- Graduate School of Agriculture and Life SciencesUniversity of TokyoYayoi, BunkyoTokyo113‐8657Japan
- Graduate School of Life SciencesTohoku UniversityKatahira 2‐1‐1, Aoba‐kuSendai980‐8577Japan
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50
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Borghi L, Kang J, de Brito Francisco R. Filling the Gap: Functional Clustering of ABC Proteins for the Investigation of Hormonal Transport in planta. FRONTIERS IN PLANT SCIENCE 2019; 10:422. [PMID: 31057565 PMCID: PMC6479136 DOI: 10.3389/fpls.2019.00422] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Accepted: 03/20/2019] [Indexed: 05/09/2023]
Abstract
Plant hormones regulate a myriad of plant processes, from seed germination to reproduction, from complex organ development to microelement uptake. Much has been discovered on the factors regulating the activity of phytohormones, yet there are gaps in knowledge about their metabolism, signaling as well as transport. In this review we analyze the potential of the characterized phytohormonal transporters belonging to the ATP-Binding Cassette family (ABC proteins), thus to identify new candidate orthologs in model plants and species important for human health and food production. Previous attempts with phylogenetic analyses on transporters belonging to the ABC family suggested that sequence homology per se is not a powerful tool for functional characterization. However, we show here that sequence homology might indeed support functional conservation of characterized members of different classes of ABC proteins in several plant species, e.g., in the case of ABC class G transporters of strigolactones and ABC class B transporters of auxinic compounds. Also for the low-affinity, vacuolar abscisic acid (ABA) transporters belonging to the ABCC class we show that localization-, rather than functional-clustering occurs, possibly because of sequence conservation for targeting the tonoplast. The ABC proteins involved in pathogen defense are phylogenetically neighboring despite the different substrate identities, suggesting that sequence conservation might play a role in their activation/induction after pathogen attack. Last but not least, in case of the multiple lipid transporters belong to different ABC classes, we focused on ABC class D proteins, reported to transport/affect the synthesis of hormonal precursors. Based on these results, we propose that phylogenetic approaches followed by transport bioassays and in vivo investigations might accelerate the discovery of new hormonal transport routes and allow the designing of transgenic and genome editing approaches, aimed to improve our knowledge on plant development, plant-microbe symbioses, plant nutrient uptake and plant stress resistance.
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