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Kondo SI, Okada N, Abe S, Tanaka R, Yamamura M, Unno M. Anion recognition by silanetriol in acetonitrile. Org Biomol Chem 2022; 20:8925-8931. [DOI: 10.1039/d2ob01596j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Anion recognition ability and organocatalytic activity of a silanetriol are firstly presented by comparing with those of a series of silanol derivatives.
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Affiliation(s)
- Shin-ichi Kondo
- Department of Chemistry, Faculty of Science, Yamagata University, Yamagata 990-8560, Japan
| | - Natsumi Okada
- Department of Chemistry and Chemical Biology, Graduate School of Science and Technology, Gunma University, Kiryu, Gunma 376-8515, Japan
| | - Shiori Abe
- Department of Chemistry, Faculty of Science, Yamagata University, Yamagata 990-8560, Japan
| | - Ryoji Tanaka
- Department of Chemistry and Chemical Biology, Graduate School of Science and Technology, Gunma University, Kiryu, Gunma 376-8515, Japan
- Sagami Chemical Research Institute, Hayakawa 2743-1, Ayase, Kanagawa 252-1193, Japan
| | - Masaki Yamamura
- Department of Chemistry and Chemical Biology, Graduate School of Science and Technology, Gunma University, Kiryu, Gunma 376-8515, Japan
- Faculty of Engineering, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama 939-0398, Japan
| | - Masafumi Unno
- Department of Chemistry and Chemical Biology, Graduate School of Science and Technology, Gunma University, Kiryu, Gunma 376-8515, Japan
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Recognition of Chiral Carboxylates by Synthetic Receptors. Molecules 2021; 26:molecules26216417. [PMID: 34770825 PMCID: PMC8587759 DOI: 10.3390/molecules26216417] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 10/19/2021] [Accepted: 10/21/2021] [Indexed: 11/17/2022] Open
Abstract
Recognition of anionic species plays a fundamental role in many essential chemical, biological, and environmental processes. Numerous monographs and review papers on molecular recognition of anions by synthetic receptors reflect the continuing and growing interest in this area of supramolecular chemistry. However, despite the enormous progress made over the last 20 years in the design of these molecules, the design of receptors for chiral anions is much less developed. Chiral recognition is one of the most subtle types of selectivity, and it requires very precise spatial organization of the receptor framework. At the same time, this phenomenon commonly occurs in many processes present in nature, often being their fundamental step. For these reasons, research directed toward understanding the chiral anion recognition phenomenon may lead to the identification of structural patterns that enable increasingly efficient receptor design. In this review, we present the recent progress made in the area of synthetic receptors for biologically relevant chiral carboxylates.
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Wen Y, He MQ, Yu YL, Wang JH. Biomolecule-mediated chiral nanostructures: a review of chiral mechanism and application. Adv Colloid Interface Sci 2021; 289:102376. [PMID: 33561566 DOI: 10.1016/j.cis.2021.102376] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Revised: 01/18/2021] [Accepted: 01/27/2021] [Indexed: 12/30/2022]
Abstract
The chirality of biomolecules is vital importance in biosensing and biomedicine. However, most biomolecules only have a chiral response in the ultraviolet region, and the corresponding chiral signal is weak. In recent years, inorganic nanomaterials can adjust chiral light signals to the visible and near-infrared regions and enhance optical signals due to their high polarizability and adjustable morphology-dependent optical properties. Nonetheless, inorganic nanomaterials usually lack specificity to identify targets, and have strong toxicity when applied in organisms. The combination of chiral biomolecules and inorganic nanomaterials offers a way to solve these problems. Because chiral biomolecules, such as DNA, amino acids, and peptides, have programmability, specific recognition, excellent biocompatibility, and strong binding force to inorganic nanomaterials. Biomolecule-mediated chiral nanostructures show specific recognition of targets, extremely low biological toxicity and adjustable optical activity by regulating, assembling and inducing inorganic nanomaterials. Therefore, biomolecule-mediated chiral nanostructures have received widespread attention, including chiral biosensing, enantiomers recognition and separation, biological diagnosis and treatment, chiral catalysis, and circular polarization of chiral metamaterials. This review mainly introduces the three chiral mechanisms of biomolecule-mediated chiral nanostructures, lists some important applications at present, and discusses the development prospects of biomolecule-mediated chiral nanostructures.
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Ariga K. Molecular recognition at the air-water interface: nanoarchitectonic design and physicochemical understanding. Phys Chem Chem Phys 2020; 22:24856-24869. [PMID: 33140772 DOI: 10.1039/d0cp04174b] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Although molecular recognition at the air-water interface has been researched for over 30 years, investigations on its fundamental aspects are still active research targets in current science. In this perspective article, developments and future possibilities of molecular recognition at the air-water interface from pioneering research efforts to current examples are overviewed especially from the physico-chemical viewpoints. Significant enhancements of binding constants for molecular recognition are actually observed at the air-water interface although molecular interactions such as hydrogen bonding are usually suppressed in aqueous media. Recent advanced analytical strategies for direct characterization of interfacial molecules also confirmed the promoted formation of hydrogen bonding at the air-water interfaces. Traditional quantum chemical approaches indicate that modulation of electronic distributions through effects from low-dielectric phases would be the origin of enhanced molecular interactions at the air-water interface. Further theoretical considerations suggest that unusual potential changes for enhanced molecular interactions are available only within a limited range from the interface. These results would be related with molecular recognition in biomolecular systems that is similarly supported by promoted molecular interactions in interfacial environments such as cell membranes, surfaces of protein interiors, and macromolecular interfaces.
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Affiliation(s)
- Katsuhiko Ariga
- WPI Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan.
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Ariga K, Mori T, Kitao T, Uemura T. Supramolecular Chiral Nanoarchitectonics. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2020; 32:e1905657. [PMID: 32191374 DOI: 10.1002/adma.201905657] [Citation(s) in RCA: 107] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Revised: 12/26/2019] [Indexed: 05/06/2023]
Abstract
Exploration of molecular functions and material properties based on the control of chirality would be a scientifically elegant approach. Here, the fabrication and function of chiral-featured materials from both chiral and achiral components using a supramolecular nanoarchitectonics concept are discussed. The contents are classified in to three topics: i) chiral nanoarchitectonics of rather general molecular assemblies; ii) chiral nanoarchitectonics of metal-organic frameworks (MOFs); iii) chiral nanoarchitectonics in liquid crystals. MOF structures are based on nanoscopically well-defined coordinations, while mesoscopic orientations of liquid-crystalline phases are often flexibly altered. Discussion on the effects and features in these representative materials systems with totally different natures reveals the universal importance of supramolecular chiral nanoarchitectonics. Amplification of chiral molecular information from molecules to materials-level structures and the creation of chirality from achiral components upon temporal statistic fluctuations are universal, regardless of the nature of the assemblies. These features are thus surely advantageous characteristics for a wide range of applications.
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Affiliation(s)
- Katsuhiko Ariga
- WPI-MANA, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
| | - Taizo Mori
- WPI-MANA, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
| | - Takashi Kitao
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Takashi Uemura
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
- CREST, Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama, 332-0012, Japan
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Yonemura S, Nakamura T, Nabeshima T. Threading/Folding Recognition Modes of Phosphodiesters by a p-Nitrophenylamide Cyclodextrin Derivative. CHEM LETT 2020. [DOI: 10.1246/cl.200085] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Sota Yonemura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Takashi Nakamura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tatsuya Nabeshima
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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Ariga K, Ishii M, Mori T. 2D Nanoarchitectonics: Soft Interfacial Media as Playgrounds for Microobjects, Molecular Machines, and Living Cells. Chemistry 2020; 26:6461-6472. [PMID: 32159246 DOI: 10.1002/chem.202000789] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Indexed: 12/15/2022]
Abstract
Soft and flexible two-dimensional (2D) systems, such as liquid interfaces, would have much more potentials in dynamic regulation on nano-macro connected functions. In this Minireview article, we focus especially on dynamic motional functions at liquid dynamic interfaces as 2D material systems. Several recent examples are selected to be explained for overviewing features and importance of dynamic soft interfaces in a wide range of action systems. The exemplified research systems are mainly classified into three categories: (i) control of microobjects with motional regulations; (ii) control of molecular machines with functions of target discrimination and optical outputs; (iii) control of living cells including molecular machine functions at cell membranes and cell/biomolecular behaviors at liquid interface. Sciences on soft 2D media with motional freedom and their nanoarchitectonics constructions will have increased importance in future technology in addition to popular rigid solid 2D materials.
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Affiliation(s)
- Katsuhiko Ariga
- WPI Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan.,Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
| | - Masaki Ishii
- WPI Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan.,Department of Pure and Applied Chemistry, Graduate School of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Taizo Mori
- WPI Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan.,Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
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Ariga K, Yamauchi Y. Nanoarchitectonics from Atom to Life. Chem Asian J 2020; 15:718-728. [PMID: 32017354 DOI: 10.1002/asia.202000106] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 01/31/2020] [Accepted: 02/03/2020] [Indexed: 12/12/2022]
Abstract
Functional materials with rational organization cannot be directly created only by nanotechnology-related top-down approaches. For this purpose, a novel research paradigm next to nanotechnology has to be established to create functional materials on the basis of deep nanotechnology knowledge. This task can be assigned to an emerging concept, nanoarchitectonics. In the nanoarchitectonics approaches, functional materials were architected through combination of atom/molecular manipulation, organic chemical synthesis, self-assembly and related spontaneous processes, field-applied assembly, micro/nano fabrications, and bio-related processes. In this short review article, nanoarchitectonics-related approaches on materials fabrications and functions are exemplified from atom-scale to living creature level. Based on their features, unsolved problems for future developments of the nanoarchitectonics concept are finally discussed.
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Affiliation(s)
- Katsuhiko Ariga
- International Center for Materials Nanoarchitectonics MANA, National Institute for Materials Science NIMS, 1-1 Namiki, 305-0044, Tsukuba, Ibaraki, JAPAN
| | - Yusuke Yamauchi
- University of Queensland, School of Chemical Engineering, AUSTRALIA
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Scaramuzzo FA, Badetti E, Licini G, Zonta C. Extending substrate sensing capabilities of zinc tris(2‐pyridylmethyl)amine‐based stereodynamic probe. Chirality 2019; 31:375-383. [DOI: 10.1002/chir.23064] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Revised: 02/12/2019] [Accepted: 02/13/2019] [Indexed: 01/16/2023]
Affiliation(s)
| | - Elena Badetti
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padova Padova Italy
| | - Giulia Licini
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padova Padova Italy
| | - Cristiano Zonta
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padova Padova Italy
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Ariga K, Makita T, Ito M, Mori T, Watanabe S, Takeya J. Review of advanced sensor devices employing nanoarchitectonics concepts. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2019; 10:2014-2030. [PMID: 31667049 PMCID: PMC6808193 DOI: 10.3762/bjnano.10.198] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2019] [Accepted: 09/06/2019] [Indexed: 05/09/2023]
Abstract
Many recent advances in sensor technology have been possible due to nanotechnological advancements together with contributions from other research fields. Such interdisciplinary collaborations fit well with the emerging concept of nanoarchitectonics, which is a novel conceptual methodology to engineer functional materials and systems from nanoscale units through the fusion of nanotechnology with other research fields, including organic chemistry, supramolecular chemistry, materials science and biology. In this review article, we discuss recent advancements in sensor devices and sensor materials that take advantage of advanced nanoarchitectonics concepts for improved performance. In the first part, recent progress on sensor systems are roughly classified according to the sensor targets, such as chemical substances, physical conditions, and biological phenomena. In the following sections, advancements in various nanoarchitectonic motifs, including nanoporous structures, ultrathin films, and interfacial effects for improved sensor function are discussed to realize the importance of nanoarchitectonic structures. Many of these examples show that advancements in sensor technology are no longer limited by progress in microfabrication and nanofabrication of device structures - opening a new avenue for highly engineered, high performing sensor systems through the application of nanoarchitectonics concepts.
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Affiliation(s)
- Katsuhiko Ariga
- WPI-MANA, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
| | - Tatsuyuki Makita
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
| | - Masato Ito
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
| | - Taizo Mori
- WPI-MANA, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
| | - Shun Watanabe
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
| | - Jun Takeya
- WPI-MANA, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
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Nakamura T, Yonemura S, Nabeshima T. Synthesis of per(5-N-carboxamide-5-dehydroxylmethyl)-β-cyclodextrins and their selective recognition ability utilizing multiple hydrogen bonds. Chem Commun (Camb) 2019; 55:3872-3875. [DOI: 10.1039/c9cc00517j] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
An amide cyclodextrin with anion recognition ability exhibits unique binding mode in which unsymmetrically arranged functional groups play distinctive roles.
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Affiliation(s)
- Takashi Nakamura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS)
- University of Tsukuba
- Tsukuba
- Japan
| | - Sota Yonemura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS)
- University of Tsukuba
- Tsukuba
- Japan
| | - Tatsuya Nabeshima
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS)
- University of Tsukuba
- Tsukuba
- Japan
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Shahrajabian M, Ghasemi F, Hormozi-Nezhad MR. Nanoparticle-based Chemiluminescence for Chiral Discrimination of Thiol-Containing Amino Acids. Sci Rep 2018; 8:14011. [PMID: 30228291 PMCID: PMC6143635 DOI: 10.1038/s41598-018-32416-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Accepted: 09/04/2018] [Indexed: 11/09/2022] Open
Abstract
The ability to recognize the molecular chirality of enantiomers is extremely important owing to their critical role in drug development and biochemistry. Convenient discrimination of enantiomers has remained a challenge due to lack of unsophisticated methods. In this work, we have reported a simple strategy for chiral recognition of thiol-containing amino acids including penicillamine (PA), and cysteine (Cys). We have successfully designed a nanoparticle-based chemiluminescence (CL) system based on the reaction between cadmium telluride quantum dots (CdTe QDs) and the enantiomers. The different interactions of CdTe QDs with PA enantiomers or Cys enantiomers led to different CL intensities, resulting in the chiral recognition of these enantiomers. The developed method showed the ability for determination of enantiomeric excess of PA and Cys. It has also obtained an enantioselective concentration range from 1.15 to 9.2 mM for PA. To demonstrate the potential application of this method, the designed platform was applied for the quantification of PA in urine and tablet samples. For the first time, we presented a novel practical application of nanoparticle-based CL system for chiral discrimination.
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Affiliation(s)
- Maryam Shahrajabian
- Department of Chemistry, Sharif University of Technology, Tehran, 11155-9516, Iran
| | - Forough Ghasemi
- Department of Chemistry, Sharif University of Technology, Tehran, 11155-9516, Iran
| | - M Reza Hormozi-Nezhad
- Department of Chemistry, Sharif University of Technology, Tehran, 11155-9516, Iran.
- Institute for Nanoscience and Nanotechnology, Sharif University of Technology, Tehran, Iran.
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