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For: Tsai YS, Gomez SM, Wang Z. Prevalent RNA recognition motif duplication in the human genome. RNA 2014;20:702-712. [PMID: 24667216 PMCID: PMC3988571 DOI: 10.1261/rna.044081.113] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Accepted: 02/17/2014] [Indexed: 06/03/2023]
Number Cited by Other Article(s)
1
Aborode AT, Abass OA, Nasiru S, Eigbobo MU, Nefishatu S, Idowu A, Tiamiyu Z, Awaji AA, Idowu N, Busayo BR, Mehmood Q, Onifade IA, Fakorede S, Akintola AA. RNA binding proteins (RBPs) on genetic stability and diseases. Glob Med Genet 2025;12:100032. [PMID: 39925443 PMCID: PMC11803229 DOI: 10.1016/j.gmg.2024.100032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Revised: 11/26/2024] [Accepted: 11/28/2024] [Indexed: 02/11/2025]  Open
2
Rojas-Sánchez S, Kolev NG, Tschudi C. Deep mutational scanning of the Trypanosoma brucei developmental regulator RBP6 reveals an essential disordered region influenced by positive residues. Nat Commun 2025;16:1168. [PMID: 39885181 PMCID: PMC11782513 DOI: 10.1038/s41467-025-56553-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Accepted: 01/22/2025] [Indexed: 02/01/2025]  Open
3
Clark M, Farinha A, Morrison A, Lisi G. Structural, biological, and biomedical implications of mRNA interactions with the master regulator HuR. NAR MOLECULAR MEDICINE 2025;2:ugaf002. [PMID: 39980665 PMCID: PMC11838611 DOI: 10.1093/narmme/ugaf002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Revised: 01/27/2025] [Accepted: 01/30/2025] [Indexed: 02/22/2025]
4
Kravchenko A, de Vries SJ, Smaïl-Tabbone M, Chauvot de Beauchene I. HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses. BMC Bioinformatics 2024;25:129. [PMID: 38532339 DOI: 10.1186/s12859-024-05733-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 03/06/2024] [Indexed: 03/28/2024]  Open
5
Roca-Martínez J, Kang HS, Sattler M, Vranken W. Analysis of the inter-domain orientation of tandem RRM domains with diverse linkers: connecting experimental with AlphaFold2 predicted models. NAR Genom Bioinform 2024;6:lqae002. [PMID: 38288375 PMCID: PMC10823583 DOI: 10.1093/nargab/lqae002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 12/07/2023] [Accepted: 01/09/2024] [Indexed: 01/31/2024]  Open
6
Roca-Martínez J, Dhondge H, Sattler M, Vranken WF. Deciphering the RRM-RNA recognition code: A computational analysis. PLoS Comput Biol 2023;19:e1010859. [PMID: 36689472 PMCID: PMC9894542 DOI: 10.1371/journal.pcbi.1010859] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 02/02/2023] [Accepted: 01/07/2023] [Indexed: 01/24/2023]  Open
7
Yang L, Wang ZA, Zuo H, Geng R, Guo Z, Niu S, Weng S, He J, Xu X. The LARK protein is involved in antiviral and antibacterial responses in shrimp by regulating humoral immunity. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2021;114:103826. [PMID: 32784011 DOI: 10.1016/j.dci.2020.103826] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 08/04/2020] [Accepted: 08/06/2020] [Indexed: 06/11/2023]
8
Mahalingam R, Walling JG. Genomic survey of RNA recognition motif (RRM) containing RNA binding proteins from barley (Hordeum vulgare ssp. vulgare). Genomics 2019;112:1829-1839. [PMID: 31669702 DOI: 10.1016/j.ygeno.2019.10.016] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 09/29/2019] [Accepted: 10/25/2019] [Indexed: 01/25/2023]
9
Segregation and potential functional impact of a rare stop-gain PABPC4L variant in familial atypical Parkinsonism. Sci Rep 2019;9:13576. [PMID: 31537871 PMCID: PMC6753086 DOI: 10.1038/s41598-019-50102-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Accepted: 09/03/2019] [Indexed: 01/23/2023]  Open
10
Mao M, Hu Y, Yang Y, Qian Y, Wei H, Fan W, Yang Y, Li X, Wang Z. Modeling and Predicting the Activities of Trans-Acting Splicing Factors with Machine Learning. Cell Syst 2018;7:510-520.e4. [PMID: 30414922 DOI: 10.1016/j.cels.2018.09.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Revised: 05/10/2018] [Accepted: 09/19/2018] [Indexed: 02/06/2023]
11
Dominguez D, Freese P, Alexis MS, Su A, Hochman M, Palden T, Bazile C, Lambert NJ, Van Nostrand EL, Pratt GA, Yeo GW, Graveley BR, Burge CB. Sequence, Structure, and Context Preferences of Human RNA Binding Proteins. Mol Cell 2018;70:854-867.e9. [PMID: 29883606 PMCID: PMC6062212 DOI: 10.1016/j.molcel.2018.05.001] [Citation(s) in RCA: 337] [Impact Index Per Article: 48.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Revised: 03/20/2018] [Accepted: 05/01/2018] [Indexed: 01/03/2023]
12
Rotem N, Magen I, Ionescu A, Gershoni-Emek N, Altman T, Costa CJ, Gradus T, Pasmanik-Chor M, Willis DE, Ben-Dov IZ, Hornstein E, Perlson E. ALS Along the Axons - Expression of Coding and Noncoding RNA Differs in Axons of ALS models. Sci Rep 2017;7:44500. [PMID: 28300211 PMCID: PMC5353576 DOI: 10.1038/srep44500] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Accepted: 02/08/2017] [Indexed: 12/18/2022]  Open
13
Wei H, Wang Z. Engineering RNA-binding proteins with diverse activities. WILEY INTERDISCIPLINARY REVIEWS-RNA 2015;6:597-613. [DOI: 10.1002/wrna.1296] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Revised: 07/09/2015] [Accepted: 07/20/2015] [Indexed: 11/11/2022]
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