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For: Kita H, Cho J, Matsuura T, Nakaishi T, Taniguchi I, Ichikawa T, Shima Y, Urabe I, Yomo T. Functional Qbeta replicase genetically fusing essential subunits EF-Ts and EF-Tu with beta-subunit. J Biosci Bioeng 2006;101:421-6. [PMID: 16781472 DOI: 10.1263/jbb.101.421] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2005] [Accepted: 02/15/2006] [Indexed: 11/17/2022]
Number Cited by Other Article(s)
1
Lobodin KV, Chetverina HV, Chetverin AB. Probing the legitimate initiation of RNA synthesis by Qβ replicase with oligonucleotide primers. FEBS Lett 2024;598:579-586. [PMID: 38408766 DOI: 10.1002/1873-3468.14833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/24/2024] [Accepted: 01/31/2024] [Indexed: 02/28/2024]
2
Thongchol J, Lill Z, Hoover Z, Zhang J. Recent Advances in Structural Studies of Single-Stranded RNA Bacteriophages. Viruses 2023;15:1985. [PMID: 37896763 PMCID: PMC10610835 DOI: 10.3390/v15101985] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 09/20/2023] [Accepted: 09/21/2023] [Indexed: 10/29/2023]  Open
3
Lobodin KV, Chetverina HV, Chetverin AB. Slippage at the initiation of RNA synthesis by Qβ replicase results in a periodic polyG pattern. FEBS Lett 2023;597:458-471. [PMID: 36477752 DOI: 10.1002/1873-3468.14556] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 10/16/2022] [Accepted: 11/25/2022] [Indexed: 12/13/2022]
4
Wang J, Yashiro Y, Sakaguchi Y, Suzuki T, Tomita K. Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors. Nucleic Acids Res 2022;50:4713-4731. [PMID: 35411396 PMCID: PMC9071432 DOI: 10.1093/nar/gkac228] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/21/2022] [Accepted: 03/25/2022] [Indexed: 12/04/2022]  Open
5
Sunami T, Ichihashi N, Nishikawa T, Kazuta Y, Yomo T. Effect of Liposome Size on Internal RNA Replication Coupled with Replicase Translation. Chembiochem 2016;17:1282-9. [DOI: 10.1002/cbic.201500662] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Indexed: 11/10/2022]
6
Sustainable proliferation of liposomes compatible with inner RNA replication. Proc Natl Acad Sci U S A 2015;113:590-5. [PMID: 26711996 DOI: 10.1073/pnas.1516893113] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
7
Gytz H, Mohr D, Seweryn P, Yoshimura Y, Kutlubaeva Z, Dolman F, Chelchessa B, Chetverin AB, Mulder FAA, Brodersen DE, Knudsen CR. Structural basis for RNA-genome recognition during bacteriophage Qβ replication. Nucleic Acids Res 2015;43:10893-906. [PMID: 26578560 PMCID: PMC4678825 DOI: 10.1093/nar/gkv1212] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2015] [Accepted: 10/28/2015] [Indexed: 01/19/2023]  Open
8
Awai T, Ichihashi N, Yomo T. Activities of 20 aminoacyl-tRNA synthetases expressed in a reconstituted translation system in Escherichia coli. Biochem Biophys Rep 2015;3:140-143. [PMID: 29124177 PMCID: PMC5668874 DOI: 10.1016/j.bbrep.2015.08.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2015] [Revised: 08/06/2015] [Accepted: 08/06/2015] [Indexed: 01/18/2023]  Open
9
Ortín J, Martín-Benito J. The RNA synthesis machinery of negative-stranded RNA viruses. Virology 2015;479-480:532-44. [PMID: 25824479 DOI: 10.1016/j.virol.2015.03.018] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Revised: 01/14/2015] [Accepted: 03/03/2015] [Indexed: 11/15/2022]
10
Usui K, Ichihashi N, Kazuta Y, Matsuura T, Yomo T. Effects of ribosomes on the kinetics of Qβ replication. FEBS Lett 2013;588:117-23. [PMID: 24269228 DOI: 10.1016/j.febslet.2013.11.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Revised: 11/05/2013] [Accepted: 11/12/2013] [Indexed: 10/26/2022]
11
Usui K, Ichihashi N, Kazuta Y, Matsuura T, Yomo T. Kinetic model of double-stranded RNA formation during long RNA replication by Qβ replicase. FEBS Lett 2013;587:2565-71. [DOI: 10.1016/j.febslet.2013.06.033] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Revised: 05/29/2013] [Accepted: 06/25/2013] [Indexed: 11/28/2022]
12
Gunasekaran K, Bergquist PL, Sunna A. Facile production and rapid purification of functional recombinant Qβ replicase heterotetramer complex. Appl Biochem Biotechnol 2012;169:651-9. [PMID: 23269632 DOI: 10.1007/s12010-012-0018-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2012] [Accepted: 12/04/2012] [Indexed: 11/25/2022]
13
Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication. ACTA ACUST UNITED AC 2012;19:478-87. [PMID: 22520754 DOI: 10.1016/j.chembiol.2012.01.019] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2011] [Revised: 01/18/2012] [Accepted: 01/19/2012] [Indexed: 01/03/2023]
14
Takeshita D, Yamashita S, Tomita K. Mechanism for template-independent terminal adenylation activity of Qβ replicase. Structure 2012;20:1661-9. [PMID: 22884418 DOI: 10.1016/j.str.2012.07.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2012] [Revised: 06/29/2012] [Accepted: 07/15/2012] [Indexed: 11/29/2022]
15
Molecular basis for RNA polymerization by Qβ replicase. Nat Struct Mol Biol 2012;19:229-37. [PMID: 22245970 DOI: 10.1038/nsmb.2204] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2011] [Accepted: 11/15/2011] [Indexed: 12/17/2022]
16
Ichihashi N, Matsuura T, Hosoda K, Yomo T. Identification of two forms of Q{beta} replicase with different thermal stabilities but identical RNA replication activity. J Biol Chem 2010;285:37210-7. [PMID: 20858892 DOI: 10.1074/jbc.m110.117846] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
17
Vasiliev NN, Jenner L, Yusupov MM, Chetverin AB. Isolation and crystallization of a chimeric Qβ replicase containing Thermus thermophilus EF-Ts. BIOCHEMISTRY (MOSCOW) 2010;75:989-94. [DOI: 10.1134/s0006297910080067] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
18
Assembly of Q{beta} viral RNA polymerase with host translational elongation factors EF-Tu and -Ts. Proc Natl Acad Sci U S A 2010;107:15733-8. [PMID: 20798060 DOI: 10.1073/pnas.1006559107] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
19
Structure of the Qbeta replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins. Proc Natl Acad Sci U S A 2010;107:10884-9. [PMID: 20534494 DOI: 10.1073/pnas.1003015107] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
20
Urabe H, Ichihashi N, Matsuura T, Hosoda K, Kazuta Y, Kita H, Yomo T. Compartmentalization in a Water-in-Oil Emulsion Repressed the Spontaneous Amplification of RNA by Qβ Replicase. Biochemistry 2010;49:1809-13. [PMID: 20108973 DOI: 10.1021/bi901805u] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Ichihashi N, Matsuura T, Kita H, Hosoda K, Sunami T, Tsukada K, Yomo T. Importance of translation-replication balance for efficient replication by the self-encoded replicase. Chembiochem 2009;9:3023-8. [PMID: 19021140 DOI: 10.1002/cbic.200800518] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
22
Tsukada K, Okazaki M, Kita H, Inokuchi Y, Urabe I, Yomo T. Quantitative analysis of the bacteriophage Qβ infection cycle. Biochim Biophys Acta Gen Subj 2009;1790:65-70. [DOI: 10.1016/j.bbagen.2008.08.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2008] [Revised: 08/12/2008] [Accepted: 08/15/2008] [Indexed: 10/21/2022]
23
Kita H, Matsuura T, Sunami T, Hosoda K, Ichihashi N, Tsukada K, Urabe I, Yomo T. Replication of Genetic Information with Self-Encoded Replicase in Liposomes. Chembiochem 2008;9:2403-10. [DOI: 10.1002/cbic.200800360] [Citation(s) in RCA: 135] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
24
Davis WG, Blackwell JL, Shi PY, Brinton MA. Interaction between the cellular protein eEF1A and the 3'-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis. J Virol 2007;81:10172-87. [PMID: 17626087 PMCID: PMC2045417 DOI: 10.1128/jvi.00531-07] [Citation(s) in RCA: 130] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
25
Hosoda K, Matsuura T, Kita H, Ichihashi N, Tsukada K, Yomo T. Kinetic analysis of the entire RNA amplification process by Qbeta replicase. J Biol Chem 2007;282:15516-27. [PMID: 17412690 DOI: 10.1074/jbc.m700307200] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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