Blood cancer diagnosis using ensemble learning based on a random subspace method in laser-induced breakdown spectroscopy

Blood detection of autoimmune encephalitis based on laser-induced breakdown spectroscopy and Raman spectroscopy

BACKGROUND

Recently, the incidence range of autoimmune encephalitis (AE) in people has rapidly expanded, and the diagnosis procedure of clinical criteria for AE remains complicated. Herein, with advantages of rapid speed, simple pre-treatment, and slightly destructive or non-destructive analysis, the feasibility of integrating laser-induced breakdown spectroscopy (LIBS) and Raman techniques to identify blood of AE patients was explored, and the mechanisms of medical diagnosis from atomic and molecular perspectives were further analyzed.

RESULTS

In the experiment, etched mesh silicon wafers were used as serum substrates to reduce the spectral variability during measurements. Totally, 1785 LIBS spectra and 1785 Raman spectra were collected from 119 people (79 healthy people and 40 AE patients), respectively. Fusion spectra were formed by connecting LIBS spectra in series behind with Raman spectra. With mutual information (MI) method, 537 features were selected from fusion spectra, and the accuracy and test time of long short-term memory model using these features were 95.04 % and 0.95 s, an improvement by 14.36 %, 8.03 %, 2.22 % and 0.48 s, 0.08 s, 0.55 s compared to using LIBS spectra, Raman spectra and fusion spectra, respectively. Besides, the correlations between spectra and cytokines were analyzed by the Pearson's correlation coefficient. Both metal atoms such as Na and K and molecules such as tryptophan, deoxyribose and phenylalanine were related to cytokines, corresponding to their MI importance in the AE diagnosis.

SIGNIFICANCE

We made the first attempt to identify AE blood using fusion of spectral techniques and analyze correlation mechanism between spectra and cytokines. All results demonstrated that it is feasible to accurately identify AE serum by fusing LIBS and Raman techniques, which is expected to effectively assist the clinical diagnosis of AE in the future.

Laser-Induced Breakdown Spectroscopy and a Convolutional Neural Network Model for Predicting Total Iron Content in Iron Ores

Laser-induced breakdown spectroscopy (LIBS) is a rapid method for detecting total iron (TFe) content in iron ores. However, accuracy and measurement error of univariate regression analysis in LIBS are limited due to factors such as laser energy fluctuations and spectral interference. To address this, multiple regression analysis and feature selection/extraction are needed to reduce redundant information, decrease the correlation between variables, and quantify the TFe content of iron ores accurately. Overall, 339 batches of iron ore samples from five countries were obtained from the ports of China during the discharging, and 2034 representative spectra were collected. A convolutional neural network (CNN) model for total iron content prediction in iron ores is established. The performance of variable importance random forest (VI-RF), variable importance back propagation artificial neural network (VI-BP-ANN), and CNN-assisted LIBS in predicting the TFe content of iron ores was compared. Coefficient of determination (R2), root mean square error (RMSE), mean relative error (MRE), and modeling time were selected for model evaluation. The result shows that variable importance significantly enhances the quantitative accuracy and reduces modeling time compared to traditional BP-ANN and RF models. Moreover, the CNN model outperformed manual feature selection methods (VI-BP-ANN and VI-RF), exhibiting the shortest modeling time, highest R2, lowest RMSE, and MRE. CNN model's unique characteristics, such as weight sharing and local connection, make it well suited for analyzing high-dimensional LIBS data in multivariate regression analysis. Our approach demonstrates the effectiveness of machine learning and deep learning approaches in improving the accuracy of LIBS for TFe content prediction in iron ores. CNN-assisted LIBS method holds great potential for practical applications in the mining industry.

Cancer diagnosis based on laser-induced breakdown spectroscopy with bagging-voting fusion model

Advances in cancer diagnostics play a pivotal role in increasing early detection of cancer. Integrating laser-induced breakdown spectroscopy (LIBS) with machine learning algorithms has attracted wide interest in cancer diagnosis. However, using a single model`s efficacy is limited by algorithm principles, making it challenging to meet the comprehensive needs of cancer diagnosis. Here, we demonstrate a bagging-voting fusion (BVF) algorithm for the detection and identification of multiple types of cancer. In the BVF model of this paper, support vector machine (SVM), artificial neural network (ANN), k-nearest neighbors (KNN), quadratic discriminant analysis (QDA), and random forest (RF) models, which have relatively small homogeneity to obtain more comprehensive decision boundaries, are fused at both the training and decision levels. LIBS spectral data was collected from four types of serum samples, including liver cancer, lung cancer, esophageal cancer, and healthy control. LIBS detection was conducted on the samples, which were directly dropped onto ordered microarray silicon substrates and dried. The results showed that the BVF model achieved an accuracy of 92.53 % and a recall of 92.92 % across the four types of serum, outperforming the best single machine-learning model (SVM: accuracy 75.86 %, recall 77.50 %). Moreover, the BVF model with manual line selection feature extraction required only 140 s for a single detection and identification. In conclusion, the aforementioned results demonstrated that LIBS with BVF has excellent performance in detecting a multitude of cancers, and is expected to provide a new method for efficient and accurate cancer diagnosis.

Staging classification of omicron variant SARS-CoV-2 infection based on dual-spectrometer LIBS (DS-LIBS) combined with machine learning

Effective differentiation of the infection stages of omicron can provide significant assistance in transmission control and treatment strategies. The combination of LIBS serum detection and machine learning methods, as a novel disease auxiliary diagnostic approach, has a high potential for rapid and accurate staging classification of Omicron infection. However, conventional single-spectrometer LIBS serum detection methods focus on detecting the spectra of major elements, while trace elements are more closely related to the progression of COVID-19. Here, we proposed a rapid analytical method with dual-spectrometer LIBS (DS-LIBS) assisted with machine learning to classify different infection stages of omicron. The DS-LIBS, including a broadband spectrometer and a narrowband spectrometer, enables synchronous collection of major and trace elemental spectra in serum, respectively. By employing the RF machine learning models, the classification accuracy using the spectra data collected from DS-LIBS can reach 0.92, compared to 0.84 and 0.73 when using spectra data collected from single-spectrometer LIBS. This significant improvement in classification accuracy highlights the efficacy of the DS-LIBS approach. Then, the performance of four different models, SVM, RF, IGBT, and ETree, is compared. ETree demonstrates the best, with cross-validation and test set accuracies of 0.94 and 0.93, respectively. Additionally, it achieves classification accuracies of 1.00, 0.92, 0.92, and 0.89 for the four stages B1-acute, B1-post, B2, and B3. Overall, the results demonstrate that DS-LIBS combined with the ETree machine learning model enables effective staging classification of omicron infection.

Medical application of laser-induced breakdown spectroscopy (LIBS) for assessment of trace element and mineral in biosamples: Laboratory and clinical validity of the method

BACKGROUND

Biomedical application is based on the use of LIBS-derived data on chemical contents of tissues in diagnosis of diseases, forensic investigation, as well as a mechanism for providing online feedback for laser surgery. Although LIBS has certain advantages, the issue of correlation of LIBS-derived data on chemical element content in different human and animal tissues with other methods, and especially ICP-MS, remains pertinent. The objective of the present review was to discuss the application of laser-induced breakdown spectroscopy (LIBS) for elemental analysis of human biosamples or tissues from experimental models of human diseases.

METHODS

A systematic search in the PubMed-Medline, Scopus, and Google Scholar databases using the terms laser-induced breakdown spectroscopy, LIBS, metals, trace elements, minerals, and names of particular chemical elements was performed up through 25 February, 2023. Of all extracted studies only those dealing with human subjects, human tissues, in vivo animal and in vitro cell line models of human diseases were reviewed in detail.

RESULTS

The majority of studies revealed a wide number of metals and metalloids in solid tissues including teeth (As, Ag, Ca, Cd, Cr, Cu, Fe, Hg, Mg, Ni, P, Pb, Sn, Sr, Ti, and Zn), bones (Al, Ba, Ca, Cd, Cr, K, Mg, Na, Pb, Sr), and nails (Al, As, Ca, Fe, K, Mg, Na, P, Pb, Si, Sr, Ti, Zn). At the same time, LIBS was also used for estimation of trace element and mineral content in hair (Ca, Cu, Fe, K, Mg, Na, Zn), blood (Al, Ca, Co, Cd, Cu, Fe, Mg, Mn, Ni, Pb, Si, Sn, Zn), cancer tissues (Ca, Cu, Fe, Mg, K, Na, Zn) and other tissues. Single studies revealed satisfactory correspondence between quantitative LIBS and ICP-OES/MS data on the level of As (81-93 %), Pb (94-98 %), Cd (50-94 %) in teeth, Cu (97-105 %), Fe (117 %), Zn (88-117 %) in hair, Ca (97-99 %), Zn (90-95 %), and Pb (61-82 %) in kidney stones. LIBS also estimated specific patterns of trace element and mineral content associated with multiple pathologies, including caries, cancer, skin disorders, and other systemic diseases including diabetes mellitus type 2, osteoporosis, hypothyroidism, etc. Data obtained from in situ tissue LIBS analysis were profitably used for discrimination between tissue types.

CONCLUSIONS

Taken together, the existing data demonstrate the applicability of LIBS for medical studies, although further increase in its sensitivity, calibration range, cross-validation, and quality control is required.

Comparison of whole blood and serum samples of breast cancer based on laser-induced breakdown spectroscopy with machine learning

To identify cancer from non-cancer is one of the most challenging issues nowadays in the early diagnosis of cancer. The primary issue of early detection is to choose a suitable type of sample collection to diagnose cancer. A comparison of whole blood and serum samples of breast cancer was studied using laser-induced breakdown spectroscopy (LIBS) with machine learning methods. For LIBS spectra measurement, blood samples were dropped on a substrate of boric acid. For the discrimination of breast cancer and non-cancer samples, eight machine learning models were applied to LIBS spectral data, including decision tree, discrimination analysis, logistic regression, naïve byes, support vector machine, k-nearest neighbor, ensemble and neural networks classifiers. Discrimination between whole blood samples showed that narrow neural networks and trilayer neural networks both provided 91.7% highest prediction accuracy and serum samples showed that all the decision tree models provided 89.7% highest prediction accuracy. However, using whole blood as sample achieved the strong emission lines of spectra, better discrimination results of PCA and maximum prediction accuracy of machine learning models as compared to using serum samples. These merits concluded that whole blood samples could be a good option for the rapid detection of breast cancer. This preliminary research may provide the complementary method for early detection of breast cancer.

Stable sensing platform for diagnosing electrolyte disturbance using laser-induced breakdown spectroscopy

Electrolyte disturbance is very common and harmful, increasing the mortality of critical patients. Hence, rapid and accurate detection of electrolyte levels is vital in clinical practice. Laser-induced breakdown spectroscopy (LIBS) has the advantage of rapid and simultaneous detection of multiple elements, which meets the needs of clinical electrolyte detection. However, the cracking caused by serum drying and the effect of the coffee-ring led to the unstable spectral signal of LIBS and inaccurate detection results. Herein, we propose the ordered microarray silicon substrates (OMSS) obtained by laser microprocessing, to solve the disturbance caused by cracking and the coffee-ring effect in LIBS detection. Moreover, the area of OMSS is optimized to obtain the optimal LIBS detection effect; only a 10 uL serum sample is required. Compared with the silicon wafer substrates, the relative standard deviation (RSD) of the serum LIBS spectral reduces from above 80.00% to below 15.00% by the optimized OMSS, improving the spectral stability. Furthermore, the OMSS is combined with LIBS to form a sensing platform for electrolyte disturbance detection. A set of electrolyte disturbance simulation samples (80% of the ingredients are human serum) was prepared for this platform evaluation. Finally, the platform can achieve an accurate quantitative detection of Na and K elements (Na: RSD < 6.00%, R² = 0.991; K: RSD < 4.00%, R² = 0.981), and the detection time is within 5 min. The LIBS sensing platform has a good prospect in clinical electrolyte detection and other blood-related clinical diagnoses.

Time-resolved spectral-image laser-induced breakdown spectroscopy for precise qualitative and quantitative analysis of milk powder quality by fully excavating the matrix information

A novel and effective method named time-resolved spectral-image laser-induced breakdown spectroscopy (TRSI-LIBS) was proposed to achieve precise qualitative and quantitative analysis of milk powder quality. To verify the feasibility of TRSI-LIBS, qualitative and quantitative analysis of milk powder quality was carried out. For qualitative analysis of foreign protein adulteration, the accuracy of models based on TRSI-LIBS was higher than those based on LIBS, with an accuracy improvement of about 5% to 10%. For the quantitative analysis of foreign protein adulteration and element content, the quantitative analysis models based on TSRI-LIBS also had better effect. For instance, limit of detection (LOD),determination coefficient of prediction (R²p), root-mean-square error of prediction (RMSEP) and average relative error of prediction (AREP) of quantitative model of calcium (Ca) content based on TRSI-LIBS improved from 1.47 mg/g, 0.95, 0.35 mg/g and 23.29% to 0.81 mg/g, 0.98, 0.20 mg/g and 12.60%.

Accurate Identification and Quantification of Chinese Yam Powder Adulteration Using Laser-Induced Breakdown Spectroscopy

As a popular food, Chinese yam (CY) powder is widely used for healthy and commercial purposes. Detecting adulteration of CY powder has become essential. In this work, chemometric methods combined with laser-induced breakdown spectroscopy (LIBS) were developed for identification and quantification of CY powder adulteration. Pure powders (CY, rhizome of winged yam (RY) and cassava (CS)) and adulterated powders (CY adulterated with CS) were pressed into pellets to obtain LIBS spectra for identification and quantification experiments, respectively. After variable number optimization by principal component analysis and random forest (RF), the best model random forest-support vector machine (RF-SVM) decreased 48.57% of the input variables and improved the accuracy to 100% in identification. Following the better feature extraction method RF, the Gaussian process regression (GPR) method performed the best in the prediction of the adulteration rate, with a correlation coefficient of prediction (Rp2) of 0.9570 and a root-mean-square error of prediction (RMSEP) of 7.6243%. Besides, the variable importance of metal elements analyzed by RF revealed that Na and K were significant due to the high metabolic activity and maximum metal content of CY powder, respectively. These results demonstrated that chemometric methods combined with LIBS can identify and quantify CY powder adulteration accurately.

Classification modeling method for hyperspectral stamp-pad ink data based on one-dimensional convolutional neural network

In the questioned document, the examination of stamp-pad ink is crucial scientific evidence to discern the difference between genuine and forged documents. In this study, a new method for rapid and non-destructive identification of types of stamp-pad inks by combining hyperspectral imaging (HSI) technology and deep learning was developed. Twenty stamp-pad inks of different brands and models were collected and numbered in turn, and then, each of them was sealed six times repeatedly on the A4 printing paper for the test. After that, the hyperspectral imager was used to collect the hyperspectral images and the reflectance spectral data were obtained after pixel fusion. Principal component analysis (PCA) and non-negative matrix factorization (NMF) were used to deal with the dataset, but visual results were not good. Then, back propagation neural network (BPNN) and one-dimensional convolutional neural network (1D-CNN) were constructed and their merits and drawbacks were compared. The final loss function of the BPNN of training set and validation set was stable at 0.27 and 0.42, and the classification accuracy of the training set and validation set reached 90.02% and 83.99%, respectively. Compared with the BPNN, the 1D-CNN had better stability and efficiency for the classification. The loss function of the training set and validation set was as low as 0.068 and 0.075, and the final classification accuracy reached 98.30% and 97.94%, respectively. Therefore, the combination of hyperspectral imaging technology and 1D-CNN represents a potentially simple, non-destructive, and rapid method for stamp-pad inks detection and classification.

Meat species identification accuracy improvement using sample set portioning based on joint x-y distance and laser-induced breakdown spectroscopy

Laser-induced breakdown spectroscopy (LIBS) was suitable for the identification of meat species due to fast and less sample preparation. However, the problem of low accuracy rate of the recognition model caused by improper selection of training set samples by random split has severely restricted the development of LIBS in meat detection. Sample set portioning based on the joint x-y distance (SPXY) method was applied for dividing the meat spectra into a training set and a test set. Then, the five kinds of meat samples (shrimp, chicken, beef, scallop, and pig liver) were classified by the support vector machine (SVM). With the random split method, Kennard-Stone method, and SPXY method, the recognition accuracies of the SVM model were 90.44%, 91.95%, and 94.35%, respectively. The multidimensional scaling method was used to visualize the results of the sample split for the interpretation of the classification. The results showed that the identification performance of the SPXY method combined with the SVM model was best, and the accuracy rates of shrimp, chicken, beef, scallop, and pig liver were 100.00%, 100.00%, 100.00%, 78.57%, and 92.00%, respectively. Moreover, to verify the broad adaptability of the SPXY method, the linear discriminant analysis model, the K-nearest neighbor model, and the ensemble learning model were applied as the meat species identification model. The results demonstrated that the accuracy rate of the classification model can be improved with the SPXY method. In light of the findings, the proposed sample portioning method can improve the accuracy rate of the recognition model using LIBS.

Predictive data clustering of laser-induced breakdown spectroscopy for brain tumor analysis

Limited by the lack of training spectral data in different kinds of tissues, the diagnostic accuracy of laser-induced breakdown spectroscopy (LIBS) is hard to reach the desired level with normal supervised learning identification methods. In this paper, we proposed to apply the predictive data clustering methods with supervised learning methods together to identify tissue information accurately. The meanshift clustering method is introduced to compare with three other clustering methods which have been used in LIBS field. We proposed the cluster precision (CP) score as a new criterion to work with Calinski-Harabasz (CH) score together for the evaluation of the clustering effect. The influences of principal component analysis (PCA) on all four kinds of clustering methods are also analyzed. PCA-meanshift shows the best clustering effect based on the comprehensive evaluation combined CH and CP scores. Based on the spatial location and feature similarity information provided by the predictive clustering, the PCA-Meanshift can improve diagnosis accuracy from less than 95% to 100% for all classifiers including support vector machine (SVM), k nearest neighbor (k-NN), soft independent modeling of class analogy (Simca) and random forests (RF) models.

Detection of hypokalemia disorder and its relation with hypercalcemia in blood serum using LIBS technique for patients of colorectal cancer grade I and grade II

Cancer continues to be the most dangerous disease around the world; it causes electrolyte imbalance as well as metabolic changes. There is a complicated relationship between electrolyte disorder and cancer. Cancer patients commonly pass with abnormalities in serum electrolyte levels such as hypokalemia, hyperkalemia, hyponatremia, and hypercalcemia. So, these electrolyte imbalances indicate the existence of paraneoplastic processes and help come to a more informed prognosis. Hypokalemia is defined as a serum potassium concentration below 3.5 mmol/L and it is the second common electrolyte imbalance seen in patients with malignant diseases. In this paper, the contribution of serum potassium concentration to tumor progression was studied by applying a promising and non-invasive technique called laser-induced breakdown spectroscopy (LIBS). It was found that there is a correlation between hypokalemia and the colorectal cancer problem. Also, significant serum potassium concentration differences were detected among two different stages of the same cancer and also between two groups of the same stage of a cancer held in common but one of them suffers from hypercalcemia. In addition, the optimum conditions of LIBS setup were arranged such that it will be suitable to work with serum samples on glass substrate.

Machine learning-based LIBS spectrum analysis of human blood plasma allows ovarian cancer diagnosis

Early-stage screening and diagnosis of ovarian cancer represent an urgent need in medicine. Usual ultrasound imaging and cancer antigen CA-125 test when prescribed to a suspicious population still require reconfirmations. Spectroscopic analyses of blood, at the molecular and atomic levels, provide useful supplementary tests when coupled with effective information extraction methods. Laser-induced breakdown spectroscopy (LIBS) was employed in this work to record the elemental fingerprint of human blood plasma. A machine learning data treatment process was developed combining feature selection and regression with a back-propagation neural network, resulting in classification models for cancer detection among 176 blood plasma samples collected from patients, including also ovarian cyst and normal cases. Cancer diagnosis sensitivity and specificity of respectively 71.4% and 86.5% were obtained for randomly selected validation samples.