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Bauer AQ, Gibson EA, Wang H, Srinivasan VJ. Introduction to the Optics and the Brain 2023 feature issue. BIOMEDICAL OPTICS EXPRESS 2024; 15:2110-2113. [PMID: 38633102 PMCID: PMC11019680 DOI: 10.1364/boe.517678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Indexed: 04/19/2024]
Abstract
A feature issue is being presented by a team of guest editors containing papers based on contributed submissions including studies presented at Optics and the Brain, held April 24-27, 2023 as part of Optica Biophotonics Congress: Optics in the Life Sciences, in Vancouver, Canada.
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Affiliation(s)
- Adam Q. Bauer
- Department of Radiology, Washington University in St. Louis, St. Louis, Missouri, USA
- Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, Missouri, USA
| | - Emily A. Gibson
- Department of Bioengineering, University of Colorado Denver, Anschutz Medical Campus, Aurora, Colorado 80045, USA
| | - Hui Wang
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital/Harvard Medical School, Charlestown, MA 02129, USA
| | - Vivek J. Srinivasan
- Tech4Health Institute, NYU Langone Health, New York, New York 10010, USA
- Department of Ophthalmology, NYU Langone Health, New York, New York 10017, USA
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Silva Pereira S, Özer EE, Sebastian-Galles N. Complexity of STG signals and linguistic rhythm: a methodological study for EEG data. Cereb Cortex 2024; 34:bhad549. [PMID: 38236741 DOI: 10.1093/cercor/bhad549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 12/29/2023] [Accepted: 12/30/2023] [Indexed: 02/06/2024] Open
Abstract
The superior temporal and the Heschl's gyri of the human brain play a fundamental role in speech processing. Neurons synchronize their activity to the amplitude envelope of the speech signal to extract acoustic and linguistic features, a process known as neural tracking/entrainment. Electroencephalography has been extensively used in language-related research due to its high temporal resolution and reduced cost, but it does not allow for a precise source localization. Motivated by the lack of a unified methodology for the interpretation of source reconstructed signals, we propose a method based on modularity and signal complexity. The procedure was tested on data from an experiment in which we investigated the impact of native language on tracking to linguistic rhythms in two groups: English natives and Spanish natives. In the experiment, we found no effect of native language but an effect of language rhythm. Here, we compare source projected signals in the auditory areas of both hemispheres for the different conditions using nonparametric permutation tests, modularity, and a dynamical complexity measure. We found increasing values of complexity for decreased regularity in the stimuli, giving us the possibility to conclude that languages with less complex rhythms are easier to track by the auditory cortex.
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Affiliation(s)
- Silvana Silva Pereira
- Center for Brain and Cognition, Department of Information and Communications Technologies, Universitat Pompeu Fabra, 08005 Barcelona, Spain
| | - Ege Ekin Özer
- Center for Brain and Cognition, Department of Information and Communications Technologies, Universitat Pompeu Fabra, 08005 Barcelona, Spain
| | - Nuria Sebastian-Galles
- Center for Brain and Cognition, Department of Information and Communications Technologies, Universitat Pompeu Fabra, 08005 Barcelona, Spain
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Shin J. Feasibility of local interpretable model-agnostic explanations (LIME) algorithm as an effective and interpretable feature selection method: comparative fNIRS study. Biomed Eng Lett 2023; 13:689-703. [PMID: 37873000 PMCID: PMC10590353 DOI: 10.1007/s13534-023-00291-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Revised: 05/23/2023] [Accepted: 05/25/2023] [Indexed: 10/25/2023] Open
Abstract
Many feature selection methods have been evaluated in functional near-infrared spectroscopy (fNIRS)-related studies. The local interpretable model-agnostic explanation (LIME) algorithm is a feature selection method for fNIRS datasets that has not yet been validated; the demand for its validation is increasing. To this end, we assessed the feature selection performance of LIME for fNIRS datasets in terms of classification accuracy. A comparative analysis was conducted for the benchmark (classification accuracy obtained without applying any feature selection method), LIME, two filter-based methods (minimum-redundancy maximum-relevance and t-test), and one wrapper-based method (sequential forward selection). To ensure the fairness and reliability of the performance evaluation, several open-access fNIRS datasets were used. The analysis revealed that LIME greatly outperformed the other feature selection methods in most cases and could achieve a statistically significantly better classification accuracy than that of the benchmark methods. These findings implied the effectiveness of LIME as a feature selection approach for fNIRS datasets.
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Affiliation(s)
- Jaeyoung Shin
- Department of Electronic Engineering, Wonkwang University, Iksan, 54538 Republic of Korea
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Su WC, Colacot R, Ahmed N, Nguyen T, George T, Gandjbakhche A. The use of functional near-infrared spectroscopy in tracking neurodevelopmental trajectories in infants and children with or without developmental disorders: a systematic review. Front Psychiatry 2023; 14:1210000. [PMID: 37779610 PMCID: PMC10536152 DOI: 10.3389/fpsyt.2023.1210000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 08/24/2023] [Indexed: 10/03/2023] Open
Abstract
Understanding the neurodevelopmental trajectories of infants and children is essential for the early identification of neurodevelopmental disorders, elucidating the neural mechanisms underlying the disorders, and predicting developmental outcomes. Functional Near-Infrared Spectroscopy (fNIRS) is an infant-friendly neuroimaging tool that enables the monitoring of cerebral hemodynamic responses from the neonatal period. Due to its advantages, fNIRS is a promising tool for studying neurodevelopmental trajectories. Although many researchers have used fNIRS to study neural development in infants/children and have reported important findings, there is a lack of synthesized evidence for using fNIRS to track neurodevelopmental trajectories in infants and children. The current systematic review summarized 84 original fNIRS studies and showed a general trend of age-related increase in network integration and segregation, interhemispheric connectivity, leftward asymmetry, and differences in phase oscillation during resting-state. Moreover, typically developing infants and children showed a developmental trend of more localized and differentiated activation when processing visual, auditory, and tactile information, suggesting more mature and specialized sensory networks. Later in life, children switched from recruiting bilateral auditory to a left-lateralized language circuit when processing social auditory and language information and showed increased prefrontal activation during executive functioning tasks. The developmental trajectories are different in children with developmental disorders, with infants at risk for autism spectrum disorder showing initial overconnectivity followed by underconnectivity during resting-state; and children with attention-deficit/hyperactivity disorders showing lower prefrontal cortex activation during executive functioning tasks compared to their typically developing peers throughout childhood. The current systematic review supports the use of fNIRS in tracking the neurodevelopmental trajectories in children. More longitudinal studies are needed to validate the neurodevelopmental trajectories and explore the use of these neurobiomarkers for the early identification of developmental disorders and in tracking the effects of interventions.
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Affiliation(s)
| | | | | | | | | | - Amir Gandjbakhche
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD), National Institutes of Health, Bethesda, MD, United States
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Chen H, Liang J, Huang W, Yang A, Pang R, Zhao C, Wu K, Wang C, Yan K, Zhang Y, Lin S, Xie Y, Wu Y, Sun J. Age-related difference in muscle metabolism patterns during upper limb's encircling exercise: a near-infrared spectroscopy study. BIOMEDICAL OPTICS EXPRESS 2022; 13:4737-4751. [PMID: 36187255 PMCID: PMC9484442 DOI: 10.1364/boe.462551] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 06/24/2022] [Accepted: 07/10/2022] [Indexed: 06/16/2023]
Abstract
Aging is usually accompanied by decrease in limb motor function and change in muscle metabolism patterns. However, few studies have investigated the aging effect on muscle hemodynamics of the upper extremity. This study aims to explore the aging effect on muscle metabolism patterns during upper limb's exercise. Twelve middle-aged and elderly subjects and 12 young subjects were recruited, and muscle oxygenation signals from these subjects' biceps brachii muscles were collected during active and passive upper limb's encircling exercise with near-infrared spectroscopy (NIRS). The old group showed stronger muscle hemodynamic metabolism than the young group. The multiscale fuzzy approximate entropy and multiscale transfer entropy analyses indicated higher complexity and stronger interlimb coupling of the muscle oxygenation signals for the old group. Based on the selected muscle metabolism features, the constructed support vector machine model showed a high accuracy rate for classifying the two groups of subjects: 91.6% for the passive mode and 87.5% for the active mode. Our results proved the specific muscle metabolism patterns in the upper limb's exercise for old subjects, promoting the understanding of the aging effect on muscle hemodynamics.
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Affiliation(s)
- Hucheng Chen
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
- Equal contribution
| | - Jianbin Liang
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
- Equal contribution
| | - Wenzhu Huang
- Fifth Affiliated Hospital of Foshan University, Foshan, China
| | - Anping Yang
- School of Medicine, Foshan University, Foshan, China
| | - Richong Pang
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Chaochao Zhao
- School of Medicine, Foshan University, Foshan, China
| | - Kai Wu
- School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou, China
| | - Chong Wang
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Kecheng Yan
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - YiZheng Zhang
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Shuoshu Lin
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Yuanrong Xie
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Yuxiang Wu
- Department of Health and Physical Education, Jianghan University, Wuhan, China
| | - Jinyan Sun
- School of Medicine, Foshan University, Foshan, China
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