Speckle noise reduction of multi-frame optical coherence tomography data using multi-linear principal component analysis

Optical coherence tomography image despeckling based on tensor singular value decomposition and fractional edge detection

Optical coherence tomography (OCT) imaging is a technique that is frequently used to diagnose medical conditions. However, coherent noise, sometimes referred to as speckle noise, can dramatically reduce the quality of OCT images, which has an adverse effect on how OCT images are used. In order to enhance the quality of OCT images, a speckle noise reduction technique is developed, and this method is modelled as a low-rank tensor approximation issue. The grouped 3D tensors are first transformed into the transform domain using tensor singular value decomposition (t-SVD). Then, to cut down on speckle noise, transform coefficients are thresholded. Finally, the inverse transform can be used to produce images with speckle suppression. To further enhance the despeckling results, a feature-guided thresholding approach based on fractional edge detection and an adaptive backward projection technique are also presented. Experimental results indicate that the presented algorithm outperforms several comparison methods in relation to speckle suppression, objective metrics, and edge preservation.

Speckle attenuation for optical coherence tomography images using the generalized low rank approximations of matrices

A frequently used technology in medical diagnosis is optical coherence tomography (OCT). However, coherent noise, also known as speckle noise, has the potential to severely reduce the quality of OCT images, which would be detrimental to the use of OCT images for disease diagnosis. In this paper, a despeckling method is proposed to effectively reduce the speckle noise in OCT images using the generalized low rank approximations of matrices (GLRAM). Specifically, the Manhattan distance (MD)-based block matching method is first used to find nonlocal similar blocks for the reference one. The left and right projection matrices shared by these image blocks are then found using the GLRAM approach, and an adaptive method based on asymptotic matrix reconstruction is proposed to determine how many eigenvectors are present in the left and right projection matrices. Finally, all the reconstructed image blocks are aggregated to create the despeckled OCT image. In addition, an edge-guided adaptive back-projection strategy is used to improve the despeckling performance of the proposed method. Experiments with synthetic and real OCT images show that the presented method performs well in both objective measurements and visual evaluation.

Non-Local Mean Denoising Algorithm Based on Fractional Compact Finite Difference Scheme Effectively Reduces Speckle Noise in Optical Coherence Tomography Images

Optical coherence tomography (OCT) is used in various fields such, as medical diagnosis and material inspection, as a non-invasive and high-resolution optical imaging modality. However, an OCT image is damaged by speckle noise during its generation, thus reducing the image quality. To address this problem, a non-local means (NLM) algorithm based on the fractional compact finite difference scheme (FCFDS) is proposed to remove the speckle noise in OCT images. FCFDS uses more local pixel information when compared to integer-order difference operators. The FCFDS operator is introduced into the NLM algorithm to construct a high-precision weight calculation so that the proposed algorithm can effectively reduce the speckle noise in the OCT images. Experiments on simulations and real OCT images show that the proposed method is comparable to other state-of-the-art despeckling methods and can substantially reduce noise and preserve image details such as edges and structures. Speckle noise removal can further promote the application of the proposed algorithm in medical diagnosis and industrial detection, as it has key research value.

Denoising of Fluorescence Image on the Surface of Quantum Dot/Nanoporous Silicon Biosensors

In the process of biological detection of porous silicon photonic crystals based on quantum dots, the concentration of target organisms can be indirectly measured via the change in the gray value of the fluorescence emitted from the quantum dots in the porous silicon pores before and after the biological reaction on the surface of the device. However, due to the disordered nanostructures in porous silicon and the roughness of the surface, the fluorescence images on the surface contain noise. This paper analyzes the type of noise and its influence on the gray value of fluorescent images. The change in the gray value caused by noise greatly reduces the detection sensitivity. To reduce the influence of noise on the gray value of quantum dot fluorescence images, this paper proposes a denoising method based on gray compression and nonlocal anisotropic diffusion filtering. We used the proposed method to denoise the quantum dot fluorescence image after DNA hybridization in a Bragg structure porous silicon device. The experimental results show that the sensitivity of digital image detection improved significantly after denoising.

Directional analysis of intensity changes for determining the existence of cyst in optical coherence tomography images

Diabetic retinopathy (DR) is an important cause of blindness in people with the long history of diabetes. DR is caused due to the damage to blood vessels in the retina. One of the most important manifestations of DR is the formation of fluid-filled regions between retinal layers. The evaluation of stage and transcribed drugs can be possible through the analysis of retinal Optical Coherence Tomography (OCT) images. Therefore, the detection of cysts in OCT images and the is of considerable importance. In this paper, a fast method is proposed to determine the status of OCT images as cystic or non-cystic. The method consists of three phases which are pre-processing, boundary pixel determination and post-processing. After applying a noise reduction method in the pre-processing step, the method finds the pixels which are the boundary pixels of cysts. This process is performed by finding the significant intensity changes in the vertical direction and considering rectangular patches around the candidate pixels. The patches are verified whether or not they contain enough pixels making considerable diagonal intensity changes. Then, a shadow omission method is proposed in the post-processing phase to extract the shadow regions which can be mistakenly considered as cystic areas. Then, the pixels extracted in the previous phase that are near the shadow regions are removed to prevent the production of false positive cases. The performance of the proposed method is evaluated in terms of sensitivity and specificity on real datasets. The experimental results show that the proposed method produces outstanding results from both accuracy and speed points of view.

Noise-Powered Disentangled Representation for Unsupervised Speckle Reduction of Optical Coherence Tomography Images

Due to its noninvasive character, optical coherence tomography (OCT) has become a popular diagnostic method in clinical settings. However, the low-coherence interferometric imaging procedure is inevitably contaminated by heavy speckle noise, which impairs both visual quality and diagnosis of various ocular diseases. Although deep learning has been applied for image denoising and achieved promising results, the lack of well-registered clean and noisy image pairs makes it impractical for supervised learning-based approaches to achieve satisfactory OCT image denoising results. In this paper, we propose an unsupervised OCT image speckle reduction algorithm that does not rely on well-registered image pairs. Specifically, by employing the ideas of disentangled representation and generative adversarial network, the proposed method first disentangles the noisy image into content and noise spaces by corresponding encoders. Then, the generator is used to predict the denoised OCT image with the extracted content features. In addition, the noise patches cropped from the noisy image are utilized to facilitate more accurate disentanglement. Extensive experiments have been conducted, and the results suggest that our proposed method is superior to the classic methods and demonstrates competitive performance to several recently proposed learning-based approaches in both quantitative and qualitative aspects. Code is available at: https://github.com/tsmotlp/DRGAN-OCT.

Multivariate Statistical Modeling of Retinal Optical Coherence Tomography

In this paper a new statistical multivariate model for retinal Optical Coherence Tomography (OCT) B-scans is proposed. Due to the layered structure of OCT images, there is a horizontal dependency between adjacent pixels at specific distances, which led us to propose a more accurate multivariate statistical model to be employed in OCT processing applications such as denoising. Due to the asymmetric form of the probability density function (pdf) in each retinal layer, a generalized version of multivariate Gaussian Scale Mixture (GSM) model, which we refer to as GM-GSM model, is proposed for each retinal layer. In this model, the pixel intensities in each retinal layer are modeled with an asymmetric Bessel K Form (BKF) distribution as a specific form of the GM-GSM model. Then, by combining some layers together, a mixture of GM-GSM model with eight components is proposed. The proposed model is then easily converted to a multivariate Gaussian Mixture model (GMM) to be employed in the spatially constrained GMM denoising algorithm. The Q-Q plot is utilized to evaluate goodness of fit of each component of the final mixture model. The improvement in the noise reduction results based on the GM-GSM model, indicates that the proposed statistical model describes the OCT data more accurately than other competing methods that do not consider spatial dependencies between neighboring pixels.

Guided filtering-based nonlocal means despeckling of optical coherence tomography images

This Letter presents a guided filtering (GF)-based nonlocal means (NLM) method for despeckling of optical coherence tomography (OCT) images. Unlike existing NLM methods that determine weights using image intensities or features, the proposed method first uses the GF to capture both grayscale information and features of the input image and then introduces them into the NLM for accurate weight computation. The boosting and iterative strategies are further incorporated to ensure despeckling performance. Experiments on the real OCT images demonstrate that our method outperforms the compared methods by delivering sufficient noise reduction and preserving image details well.

Simultaneous denoising and super-resolution of optical coherence tomography images based on generative adversarial network

Optical coherence tomography (OCT) has become a very promising diagnostic method in clinical practice, especially for ophthalmic diseases. However, speckle noise and low sampling rates have intensively reduced the quality of OCT images, which prevents the development of OCT-assisted diagnosis. Therefore, we propose a generative adversarial network-based approach (named SDSR-OCT) to simultaneously denoise and super-resolve OCT images. Moreover, we trained three different super-resolution models with different upscale factors (2× , 4× and 8×) to adapt to the corresponding downsampling rates. We also quantitatively and qualitatively compared our proposed method with some well-known algorithms. The experimental results show that our approach can effectively suppress speckle noise and can super-resolve OCT images at different scales.