A high-sensitivity femtosecond to microsecond time-resolved infrared vibrational spectrometer

Biomolecular infrared spectroscopy: making time for dynamics

Time resolved infrared spectroscopy of biological molecules has provided a wealth of information relating to structural dynamics, conformational changes, solvation and intermolecular interactions. Challenges still exist however arising from the wide range of timescales over which biological processes occur, stretching from picoseconds to minutes or hours. Experimental methods are often limited by vibrational lifetimes of probe groups, which are typically on the order of picoseconds, while measuring an evolving system continuously over some 18 orders of magnitude in time presents a raft of technological hurdles. In this Perspective, a series of recent advances which allow biological molecules and processes to be studied over an increasing range of timescales, while maintaining ultrafast time resolution, will be reviewed, showing that the potential for real-time observation of biomolecular function draws ever closer, while offering a new set of challenges to be overcome.

Broadband transient absorption spectroscopy using an incoherent white-light source as probe

Time-resolved spectroscopy and, in particular, transient absorption methods have been widely employed to study the dynamics of materials, usually achieving time resolution down to femtoseconds with measurement windows up to a few nanoseconds. Various techniques have been developed to extend the measurement duration up to milliseconds and beyond to permit probing slower dynamics. However, most of these either demand complicated and expensive equipment or do not provide broadband spectral coverage. This paper proposes a transient absorption technique in which an ultra-short pulse laser and a broadband incoherent continuous-wave light source are employed as pump and probe, respectively. Detection of the transient probe transmission is performed in a time-resolved fashion with a fast photodiode after a monochromator and the data is recorded with an oscilloscope. The time resolution is determined by the electronic bandwidth of the detection and acquisition devices and is ∼1 ns, with a measurement duration window of up to milliseconds and a spectral resolution of <2 nm covering from 0.4 to 2 µm. In addition, the setup can be employed to measure time- and spectrally-resolved photoluminescence.

Electronic Excited States of Tungsten(0) Arylisocyanides

W(CNAryl)6 complexes containing 2,6-diisopropylphenyl isocyanide (CNdipp) are powerful photoreductants with strongly emissive long-lived excited states. These properties are enhanced upon appending another aryl ring, e.g., W(CNdippPh(OMe2))6; CNdippPh(OMe2) = 4-(3,5-dimethoxyphenyl)-2,6-diisopropylphenylisocyanide (Sattler et al. J. Am. Chem. Soc. 2015, 137, 1198-1205). Electronic transitions and low-lying excited states of these complexes were investigated by time-dependent density functional theory (TDDFT); the lowest triplet state was characterized by time-resolved infrared spectroscopy (TRIR) supported by density functional theory (DFT). The intense absorption band of W(CNdipp)6 at 460 nm and that of W(CNdippPh(OMe2))6 at 500 nm originate from transitions of mixed ππ*(C≡N-C)/MLCT(W → Aryl) character, whereby W is depopulated by ca. 0.4 e(-) and the electron-density changes are predominantly localized along two equatorial molecular axes. The red shift and intensity rise on going from W(CNdipp)6 to W(CNdippPh(OMe2))6 are attributable to more extensive delocalization of the MLCT component. The complexes also exhibit absorptions in the 300-320 nm region, owing to W → C≡N MLCT transitions. Electronic absorptions in the spectrum of W(CNXy)6 (Xy = 2,6-dimethylphenyl), a complex with orthogonal aryl orientation, have similar characteristics, although shifted to higher energies. The relaxed lowest W(CNAryl)6 triplet state combines ππ* excitation of a trans pair of C≡N-C moieties with MLCT (0.21 e(-)) and ligand-to-ligand charge transfer (LLCT, 0.24-0.27 e(-)) from the other four CNAryl ligands to the axial aryl and, less, to C≡N groups; the spin density is localized along a single Aryl-N≡C-W-C≡N-Aryl axis. Delocalization of excited electron density on outer aryl rings in W(CNdippPh(OMe2))6 likely promotes photoinduced electron-transfer reactions to acceptor molecules. TRIR spectra show an intense broad bleach due to ν(C≡N), a prominent transient upshifted by 60-65 cm(-1), and a weak down-shifted feature due to antisymmetric C≡N stretch along the axis of high spin density. The TRIR spectral pattern remains unchanged on the femtosecond-nanosecond time scale, indicating that intersystem crossing and electron-density localization are ultrafast (<100 fs).

Electron-transfer acceleration investigated by time resolved infrared spectroscopy

Ultrafast electron transfer (ET) processes are important primary steps in natural and artificial photosynthesis, as well as in molecular electronic/photonic devices. In biological systems, ET often occurs surprisingly fast over long distances of several tens of angströms. Laser-pulse irradiation is conveniently used to generate strongly oxidizing (or reducing) excited states whose reactions are then studied by time-resolved spectroscopic techniques. While photoluminescence decay and UV-vis absorption supply precise kinetics data, time-resolved infrared absorption (TRIR) and Raman-based spectroscopies have the advantage of providing additional structural information and monitoring vibrational energy flows and dissipation, as well as medium relaxation, that accompany ultrafast ET. We will discuss three cases of photoinduced ET involving the Re(I)(CO)3(N,N) moiety (N,N = polypyridine) that occur much faster than would be expected from ET theories. [Re(4-N-methylpyridinium-pyridine)(CO)3(N,N)](2+) represents a case of excited-state picosecond ET between two different ligands that remains ultrafast even in slow-relaxing solvents, beating the adiabatic limit. This is caused by vibrational/solvational excitation of the precursor state and participation of high-frequency quantum modes in barrier crossing. The case of Re-tryptophan assemblies demonstrates that excited-state Trp → *Re(II) ET is accelerated from nanoseconds to picoseconds when the Re(I)(CO)3(N,N) chromophore is appended to a protein, close to a tryptophan residue. TRIR in combination with DFT calculations and structural studies reveals an interaction between the N,N ligand and the tryptophan indole. It results in partial electronic delocalization in the precursor excited state and likely contributes to the ultrafast ET rate. Long-lived vibrational/solvational excitation of the protein Re(I)(CO)3(N,N)···Trp moiety, documented by dynamic IR band shifts, could be another accelerating factor. The last discussed process, back-ET in a porphyrin-Re(I)(CO)3(N,N) dyad, demonstrates that formation of a hot product accelerates highly exergonic ET in the Marcus inverted region. Overall, it follows that ET can be accelerated by enhancing the electronic interaction and by vibrational excitation of the reacting system and its medium, stressing the importance of quantum nuclear dynamics in ET reactivity. These effects are experimentally accessible by time-resolved vibrational spectroscopies (IR, Raman) in combination with quantum chemical calculations. It is suggested that structural dynamics play different mechanistic roles in light-triggered ET involving electronically excited donors or acceptors than in ground-state processes. While TRIR spectroscopy is well suitable to elucidate ET processes on a molecular-level, transient 2D-IR techniques combining optical and two IR (or terahertz) laser pulses present future opportunities for investigating, driving, and controlling ET.

Tryptophan-accelerated electron flow across a protein-protein interface

We report a new metallolabeled blue copper protein, Re126W122Cu(I) Pseudomonas aeruginosa azurin, which has three redox sites at well-defined distances in the protein fold: Re(I)(CO)3(4,7-dimethyl-1,10-phenanthroline) covalently bound at H126, a Cu center, and an indole side chain W122 situated between the Re and Cu sites (Re-W122(indole) = 13.1 Å, dmp-W122(indole) = 10.0 Å, Re-Cu = 25.6 Å). Near-UV excitation of the Re chromophore leads to prompt Cu(I) oxidation (<50 ns), followed by slow back ET to regenerate Cu(I) and ground-state Re(I) with biexponential kinetics, 220 ns and 6 μs. From spectroscopic measurements of kinetics and relative ET yields at different concentrations, it is likely that the photoinduced ET reactions occur in protein dimers, (Re126W122Cu(I))2 and that the forward ET is accelerated by intermolecular electron hopping through the interfacial tryptophan: *Re//←W122←Cu(I), where // denotes a protein-protein interface. Solution mass spectrometry confirms a broad oligomer distribution with prevalent monomers and dimers, and the crystal structure of the Cu(II) form shows two Re126W122Cu(II) molecules oriented such that redox cofactors Re(dmp) and W122-indole on different protein molecules are located at the interface at much shorter intermolecular distances (Re-W122(indole) = 6.9 Å, dmp-W122(indole) = 3.5 Å, and Re-Cu = 14.0 Å) than within single protein folds. Whereas forward ET is accelerated by hopping through W122, BET is retarded by a space jump at the interface that lacks specific interactions or water molecules. These findings on interfacial electron hopping in (Re126W122Cu(I))2 shed new light on optimal redox-unit placements required for functional long-range charge separation in protein complexes.

Time-resolved multiple probe spectroscopy

Time-resolved multiple probe spectroscopy combines optical, electronic, and data acquisition capabilities to enable measurement of picosecond to millisecond time-resolved spectra within a single experiment, using a single activation pulse. This technology enables a wide range of dynamic processes to be studied on a single laser and sample system. The technique includes a 1 kHz pump, 10 kHz probe flash photolysis-like mode of acquisition (pump-probe-probe-probe, etc.), increasing the amount of information from each experiment. We demonstrate the capability of the instrument by measuring the photolysis of tungsten hexacarbonyl (W(CO)(6)) monitored by IR absorption spectroscopy, following picosecond vibrational cooling of product formation through to slower bimolecular diffusion reactions on the microsecond time scale.

Charge photoinjection in intercalated and covalently bound [Re(CO)3(dppz)(py)]+-DNA constructs monitored by time-resolved visible and infrared spectroscopy

The complex [Re(CO)(3)(dppz)(py'-OR)](+) (dppz = dipyrido[3,2-a:2',3'-c]phenazine; py'-OR = 4-functionalized pyridine) offers IR sensitivity and can oxidize DNA directly from the excited state, making it a promising probe for the study of DNA-mediated charge transport (CT). The behavior of several covalent and noncovalent Re-DNA constructs was monitored by time-resolved IR (TRIR) and UV/visible spectroscopies, as well as biochemical methods, confirming the long-range oxidation of DNA by the excited complex. Optical excitation of the complex leads to population of MLCT and at least two distinct intraligand states. Experimental observations that are consistent with charge injection from these excited states include similarity between long-time TRIR spectra and the reduced state spectrum observed by spectroelectrochemistry, the appearance of a guanine radical signal in TRIR spectra, and the eventual formation of permanent guanine oxidation products. The majority of reactivity occurs on the ultrafast time scale, although processes dependent on slower conformational motions of DNA, such as the accumulation of oxidative damage at guanine, are also observed. The ability to measure events on such disparate time scales, its superior selectivity in comparison to other spectroscopic techniques, and the ability to simultaneously monitor carbonyl ligand and DNA IR absorption bands make TRIR a valuable tool for the study of CT in DNA.

The excited-state decay of 1-methyl-2(1H)-pyrimidinone is an activated process

The photophysics of 1-methyl-2(1H)-pyrimidinone (1MP) dissolved in water is investigated by steady-state and time-resolved fluorescence, UV/Vis absorption, and IR spectroscopy. In the experiments, excitation light is tuned to the lowest-energy absorption band of 1MP peaking at 302 nm. At room temperature (291 K) its fluorescence lifetime amounts to 450 ps. With increasing temperature this lifetime decreases and equals 160 ps at 338 K. Internal conversion (IC) repopulating the ground state and intersystem crossing (ISC) to a triplet state are the dominant decay channels of the excited singlet state. At room temperature both channels contribute equally to the decay, that is, the quantum yields of IC and ISC are both approximately 0.5. The temperature dependence of UV/Vis transient absorption signals shows that the activation energy of the IC process (2140 cm(-1)) is higher than that of the ISC process (640 cm(-1)).

Phototriggering electron flow through Re(I)-modified Pseudomonas aeruginosa azurins

The [Re(I)(CO)(3)(4,7-dimethyl-1,10-phenanthroline)(histidine-124)(tryptophan-122)] complex, denoted [Re(I)(dmp)(W122)], of Pseudomonas aeruginosa azurin behaves as a single photoactive unit that triggers very fast electron transfer (ET) from a distant (2 nm) Cu(I) center in the protein. Analysis of time-resolved (ps-μs) IR spectroscopic and kinetics data collected on [Re(I)(dmp)(W122)AzM] (in which M=Zn(II), Cu(II), Cu(I); Az=azurin) and position-122 tyrosine (Y), phenylalanine (F), and lysine (K) mutants, together with excited-state DFT/time-dependent (TD)DFT calculations and X-ray structural characterization, reveal the character, energetics, and dynamics of the relevant electronic states of the [Re(I)(dmp)(W122)] unit and a cascade of photoinduced ET and relaxation steps in the corresponding Re-azurins. Optical population of [Re(I)(imidazole-H124)(CO)(3)]→dmp (1)CT states (CT=charge transfer) is followed by around 110 fs intersystem crossing and about 600 ps structural relaxation to a (3)CT state. The IR spectrum indicates a mixed Re(I)(CO)(3),A→dmp/π→π(*)(dmp) character for aromatic amino acids A122 (A=W, Y, F) and Re(I)(CO)(3)→dmp metal-ligand charge transfer (MLCT) for [Re(I)(dmp)(K122)AzCu(II)]. In a few ns, the (3)CT state of [Re(I)(dmp)(W122)AzM] establishes an equilibrium with the [Re(I)(dmp(.-))(W122(.+))AzM] charge-separated state, (3)CS, whereas the (3)CT state of the other Y, F, and K122 proteins decays to the ground state. In addition to this main pathway, (3)CS is populated by fs- and ps-W(indole)→Re(II) ET from (1)CT and the initially "hot" (3)CT states, respectively. The (3)CS state undergoes a tens-of-ns dmp(.-)→W122(.+) ET recombination leading to the ground state or, in the case of the Cu(I) azurin, a competitively fast (≈30 ns over 1.12 nm) Cu(I)→W(.+) ET, to give [Re(I)(dmp(.-))(W122)AzCu(II)]. The overall photoinduced Cu(I)→Re(dmp) ET through [Re(I)(dmp)(W122)AzCu(I)] occurs over a 2 nm distance in <50 ns after excitation, with the intervening fast (3)CT-(3)CS equilibrium being the principal accelerating factor. No reaction was observed for the three Y, F, and K122 analogues. Although the presence of [Re(dmp)(W122)AzCu(II)] oligomers in solution was documented by mass spectrometry and phosphorescence anisotropy, the kinetics data do not indicate any significant interference from the intermolecular ET steps. The ground-state dmp-indole π-π interaction together with well-matched W/W(.+) and excited-state [Re(II)(CO)(3)(dmp(.-))]/[Re(I)(CO)(3)(dmp(.-))] potentials that result in very rapid electron interchange and (3)CT-(3)CS energetic proximity, are the main factors responsible for the unique ET behavior of [Re(I)(dmp)(W122)]-containing azurins.

ULTRA: A Unique Instrument for Time-Resolved Spectroscopy

We report the development of a high-sensitivity time-resolved infrared and Raman spectrometer with exceptional experimental flexibility based on a 10-kHz synchronized dual-arm femtosecond and picosecond laser system. Ultrafast high-average-power titanium sapphire lasers and optical parametric amplifiers provide wavelength tuning from the ultraviolet (UV) to the mid-infrared region. Customized silicon, indium gallium arsenide, and mercury cadmium telluride linear array detectors are provided to monitor the probe laser intensity in the UV to mid-infrared wavelength range capable of measuring changes in sample absorbance of ΔOD ~ 10(-5) in 1 second. The system performance is demonstrated for the time-resolved infrared, two-dimensional (2D) infrared, and femtosecond stimulated Raman spectroscopy techniques with organometallic intermediates, organic excited states, and the dynamics of the tertiary structure of DNA.

ps-TRIR covers all the bases--recent advances in the use of transient IR for the detection of short-lived species in nucleic acids

Recent developments of the picosecond transient absorption infrared technique and its ability to elucidate the nature and kinetic behaviour of transient species formed upon pulsed laser excitation of nucleic acids are described.

A time-resolved infrared vibrational spectroscopic study of the photo-dynamics of crystalline materials

Time-resolved infrared vibrational spectroscopy is a structurally sensitive probe of the excited-state properties of matter. The technique has found many applications in the study of molecules in dilute solution phase but has rarely been applied to crystalline samples. We report on the use of a sensitive pump-probe time-resolved infrared spectrometer and sample handling techniques for studies of the ultrafast excited-state dynamics of crystalline materials. The charge transfer excited states of crystalline metal carbonyls and the proton transfer of dihydroxyquinones are presented and compared with the solution phase.

Photophysical properties of platinum(II)-acetylide complexes: the effect of a strongly electron-accepting diimine ligand on excited-state structure

The compounds [Pt(MesBIAN)(C[triple bond]CR)2] (R = C6H4-CN-p, 1; SiMe3, 2; C6H4-CF3-p, 3; C6H5, 4; C6H4-CH3-p 5) {MesBIAN = bis(mesitylimino)acenaphthene} have been synthesized; the X-ray crystal structure determinations of 4 and 5 and the starting material [Pt(MesBIAN)Cl2] are reported. Chemical oxidation of 4 with diiodine leads to generation of an intermediate platinum(IV) bis(acetylide) diiodide complex, which then couples and reductively eliminates the acetylide ligands as a diyne, leading to the generation of [Pt(MesBIAN)I2] 6. Compound 2 readily forms an adduct 2a with copper(I) chloride, in which the copper atom is bonded to the two acetylide triple bonds. 1-5 each undergo an irreversible oxidation, and a reversible one-electron reduction to generate a stable anion. ESR studies of 1(-)-5(-) show that the unpaired electron is localized mainly on the pi* orbital of the coordinated MesBIAN ligand, with about 10% platinum contribution to the singly occupied molecular orbital (SOMO). The compounds show a strong absorption at around 500 nm in the UV/visible spectrum, which is assigned to a "mixed metal-ligand to ligand charge transfer" (MMLL'CT) transition; this assignment is supported by time-dependent density-functional theory (TD-DFT) calculations on 5. 1-5 emit in the near-infrared region from a (3)MMLL'CT excited state, with lifetimes ranging from 8 to 36 ns. Picosecond and nanosecond time-resolved infrared (TRIR) spectroscopy has been used to probe directly the nature and dynamics of the excited state of 5. The TRIR data show a decrease of the energy of the C[triple bond]C vibration upon excitation, by about 90 cm(-1) in comparison to the ground state, and formation of a new, very intense, and very broad band at 1820 cm(-1). We propose that the excited-state structure contains some contribution from a pseudo-cumulenic form of the platinum-acetylide moiety, which is supported by TD-DFT calculations. Picosecond TRIR allowed determination of the rate of vibrational relaxation (14 ps) of the vibrationally "hot" electronic excited state of 5 formed upon initial laser excitation.

Cell design for picosecond time-resolved infrared spectroscopy in high-pressure liquids and supercritical fluids

The design of a new high-pressure infrared (IR) cell for carrying out picosecond time-resolved infrared (ps-TRIR) spectroscopy in supercritical fluids is described. We have employed thin (2 mm) MgF(2) windows in order to overcome possible undesirable nonlinear optical effects caused by the extremely high peak powers of ultrashort ultraviolet (UV)/visible pulses. The design of our cell allows for the study of systems at pressures of up to 5500 psi at temperatures of up to approximately 50 degrees C. The MgF(2) windows enable the excitation of samples with both UV and visible light pulses and these windows are transparent across much of the mid-infrared region. We have demonstrated the use of this cell by examining the photochemistry of Fe(CO)(5) in supercritical Kr (sc Kr).

Photochemical Ligand Substitution Reactions of fac-[Re(bpy)(CO)3Cl] and Derivatives

Excitation by high-energy light, such as that of 313 nm wavelength, induces a photochemical ligand substitution (PLS) reaction of fac-[Re(bpy)(CO)3Cl] (1a) to give the solvento complexes (OC-6-34)- and (OC-6-44)-[Re(bpy)(CO)2(MeCN)Cl] (2 and 3) in good yields. The disappearance quantum yield of 1a was 0.01+/-0.001 at 313 nm. The products were isolated, and X-ray crystallographic analysis was successfully performed for 2. Time-resolved IR measurements clearly indicated that the CO ligand dissociates with subpicosecond rates after excitation, leading to vibrationally hot photoproducts, which relax within 50-100 ps. Detailed studies of the reaction mechanism show that the PLS reaction of 1a does not proceed via the lowest vibrational level in the 3MLCT excited state. The PLS reaction gives 2 and (OC-6-24)-[Re(bpy)(CO)2(MeCN)Cl] (5) as primary products, and one of the products, 5, isomerizes to 3. This type of PLS reaction is more general, occurring in various fac-rhenium(I) diimine tricarbonyl complexes such as fac-[Re(X2bpy)(CO)3Cl] (X2bpy=4,4'-X2-bpy; X=MeO, NH2, CF3), fac-[Re(bpy)(CO)3(pyridine)]+, and fac-[Re(bpy)(CO)3(MeCN)]+. The stable photoproducts (OC-6-44)- and (OC-6-43)-[Re(bpy)(CO)2(MeCN)(pyridine)]+ and (OC-6-32)- and (OC-6-33)-[Re(bpy)(CO)2(MeCN)2]+ were isolated. The PLS reaction of rhenium tricarbonyl-diimine complexes is therefore applicable as a general synthetic method for novel dicarbonyls.

Monitoring the direct and indirect damage of DNA bases and polynucleotides by using time-resolved infrared spectroscopy

The nucleotide 5'-dGMP and polynucleotide poly(dGdC).poly(dGdC) have been irradiated by using a 200-fs, 200-nm laser pulses and spectrally characterized by using time-resolved infrared spectroscopy. Under the experimental conditions, 200-nm excitation generates both electronic excited states and radical cations through photoionization; the former decay rapidly to vibrationally hot ground state. By using infrared signatures we have been able to follow these processes, and at time scales of >1 ns we observe an infrared marker band at 1,702 cm(-1) within both 5'-dGMP and the polynucleotide assigned to a photoionized product of guanine. This transient has also been reproduced through indirect chemistry through the reaction with photogenerated carbonate radical with 5'-dGMP. The ability to use time-resolved infrared spectroscopy in this way paves the way for developing solution-phase studies to investigate both direct and indirect radiation chemistry of DNA.

New members of the [Ru(diimine)(CN)4]2−family: structural, electrochemical and photophysical properties

A series of complexes of the type K(2)[Ru(NN)(CN)(4)] has been prepared, in which NN is a diimine ligand, and were investigated for both their structural and photophysical properties. The ligands used (and the abbreviations for the resulting complexes) are 3-(2-pyridyl)pyrazole (Ru-pypz), 2,2'-bipyrimidine (Ru-bpym), 5,5'-dimethyl-2,2'-bipyridine (Ru-dmb), 1-ethyl-2-(2-pyridyl)benzimidazole (Ru-pbe), bidentate 2,2':6',2'''-terpyridine (Ru-tpy). The known complexes with = 2,2'-bipyridine (Ru-bpy) and 1,10-phenathroline (Ru-phen) were also included in this work. A series of crystallographic studies showed that the [Ru(NN)(CN)(4)](2-) complex anions form a range of elaborate coordination networks when crystallised with either K(+) or Ln(3+) cations. The K(+) salts are characterised by a combination of near-linear Ru-CN-K bridges, with the cyanides coordinating to K(+) in the usual 'end-on' mode, and unusual side-on pi-type coordination of cyanide ligands to K(+) ions. With Ln(3+) cations in contrast only Ru-CN-Ln near-linear bridges occurred, affording 1-dimensional helical or diamondoid chains, and 2-dimensional sheets constituted from linked metallamacrocyclic rings. All of the K(2)[Ru(CN)(4)] complexes show a reversible Ru(II)/Ru(III) couple (ca.+0.9 V vs. Ag/AgCl in water), the exception being Ru-tpy whose oxidation is completely irreversible. Luminescence studies in water showed the presence of (3)MLCT-based emission in all cases apart from Ru-bpym with lifetimes of tens/hundreds of nanoseconds. Time-resolved infrared studies showed that in the (3)MLCT excited state the principal C-N stretching vibration shifts to positive energy by ca. 50 cm(-1) as a consequence of the transient oxidation of the metal centre to Ru(III) and the reduction in back-bonding to the cyanide ligands; measurement of transient decay rates allowed measurements of (3)MLCT lifetimes for those complexes which could not be characterised by luminescence spectroscopy. A few complexes were also examined in different solvents (MeCN, dmf) and showed much weaker emission and shorter excited-state lifetimes in these solvents compared to water.