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Rodgers J, Hughes S, Ebrahimi AS, Allen AE, Storchi R, Lindner M, Peirson SN, Badea TC, Hankins MW, Lucas RJ. Enhanced restoration of visual code after targeting ON bipolar cells compared with retinal ganglion cells with optogenetic therapy. Mol Ther 2025; 33:1264-1281. [PMID: 39825567 PMCID: PMC11897768 DOI: 10.1016/j.ymthe.2025.01.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 11/13/2024] [Accepted: 01/14/2025] [Indexed: 01/20/2025] Open
Abstract
Optogenetic therapy is a promising vision restoration method where light-sensitive opsins are introduced to the surviving inner retina following photoreceptor degeneration. The cell type targeted for opsin expression will likely influence the quality of restored vision. However, a like-for-like preclinical comparison of visual responses evoked following equivalent opsin expression in the two major targets, ON bipolar (ON BCs) or retinal ganglion cells (RGCs), is absent. We address this deficit by comparing stimulus-response characteristics at single-unit resolution in the retina and dorsal lateral geniculate nucleus of retinally degenerate mice genetically engineered to express the opsin ReaChR in Grm6- or Brn3c-expressing cells (ON BC vs. RGCs, respectively). For both targeting strategies, we find ReaChR-evoked responses have equivalent sensitivity and can encode contrast across different background irradiances. Compared with ON BCs, targeting RGCs decreased response reproducibility and resulted in more stereotyped responses with reduced diversity in response polarity, contrast sensitivity, and temporal frequency tuning. Recording ReaChR-driven responses in visually intact retinas confirmed that RGC-targeted ReaChR expression disrupts visual feature selectivity of individual RGCs. Our data show that, while both approaches restore visual responses with impressive fidelity, ON BC targeting produces a richer visual code closer to that of wild-type mice.
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Affiliation(s)
- Jessica Rodgers
- Faculty of Biology, Medicine & Health, University of Manchester, Manchester M13 9PT, UK
| | - Steven Hughes
- Nuffield Laboratory of Ophthalmology, Sleep and Circadian Neuroscience Institute, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX1 3QU, UK; Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, UK
| | - Aghileh S Ebrahimi
- Faculty of Biology, Medicine & Health, University of Manchester, Manchester M13 9PT, UK
| | - Annette E Allen
- Faculty of Biology, Medicine & Health, University of Manchester, Manchester M13 9PT, UK
| | - Riccardo Storchi
- Faculty of Biology, Medicine & Health, University of Manchester, Manchester M13 9PT, UK
| | - Moritz Lindner
- Nuffield Laboratory of Ophthalmology, Sleep and Circadian Neuroscience Institute, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX1 3QU, UK; Institute of Physiology and Pathophysiology, Department of Neurophysiology, Philipps University, 35037 Marburg, Germany; Department of Ophthalmology, University Hospitals of Giessen and Marburg, 35043 Marburg, Germany
| | - Stuart N Peirson
- Nuffield Laboratory of Ophthalmology, Sleep and Circadian Neuroscience Institute, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX1 3QU, UK; Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, UK
| | - Tudor C Badea
- Neurogenetics Laboratory/ICDT, Transilvania University of Brasov, 500484 Brasov, Romania; National Brain Research Centre/ICIA, Romanian Academy, 050711 Bucharest, Romania
| | - Mark W Hankins
- Nuffield Laboratory of Ophthalmology, Sleep and Circadian Neuroscience Institute, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX1 3QU, UK; Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, UK.
| | - Robert J Lucas
- Faculty of Biology, Medicine & Health, University of Manchester, Manchester M13 9PT, UK.
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2
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Korympidou MM, Strauss S, Schubert T, Franke K, Berens P, Euler T, Vlasits AL. GABAergic amacrine cells balance biased chromatic information in the mouse retina. Cell Rep 2024; 43:114953. [PMID: 39509269 DOI: 10.1016/j.celrep.2024.114953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 07/30/2024] [Accepted: 10/21/2024] [Indexed: 11/15/2024] Open
Abstract
The retina extracts chromatic information present in an animal's environment. How this information is processed in the retina is not well understood. In the mouse, chromatic information is not collected equally throughout the retina. Green and UV signals are primarily detected in the dorsal and ventral retina, respectively. However, at the output of the retina, chromatic tuning is more mixed throughout the retina. This suggests that lateral processing by inhibitory amacrine cells shapes chromatic information at the retinal output. We systematically surveyed the chromatic responses of dendritic processes of the 40+ GABAergic amacrine cell types. We identified 25 functional types with distinct chromatic and achromatic properties. We used pharmacology and a biologically inspired deep learning model to explore how inhibition and excitation shape the properties of functional types. Our data suggest that amacrine cells balance the biased spectral tuning of excitation, thereby supporting diversity of chromatic information at the retinal output.
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Affiliation(s)
- Maria M Korympidou
- Institute for Ophthalmic Research, University of Tübingen, 72076 Tübingen, Germany; Werner Reichardt Centre for Integrative Neuroscience, University of Tübingen, 72076 Tübingen, Germany; Graduate Training Centre of Neuroscience (GTC), University of Tübingen, 72076 Tübingen, Germany
| | - Sarah Strauss
- Werner Reichardt Centre for Integrative Neuroscience, University of Tübingen, 72076 Tübingen, Germany; Graduate Training Centre of Neuroscience (GTC), University of Tübingen, 72076 Tübingen, Germany; Hertie Institute for AI in Brain Health, University of Tübingen, 72076 Tübingen, Germany
| | - Timm Schubert
- Institute for Ophthalmic Research, University of Tübingen, 72076 Tübingen, Germany; Werner Reichardt Centre for Integrative Neuroscience, University of Tübingen, 72076 Tübingen, Germany
| | - Katrin Franke
- Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA 94303, USA
| | - Philipp Berens
- Werner Reichardt Centre for Integrative Neuroscience, University of Tübingen, 72076 Tübingen, Germany; Hertie Institute for AI in Brain Health, University of Tübingen, 72076 Tübingen, Germany; Tübingen AI Center, University of Tübingen, 72076 Tübingen, Germany
| | - Thomas Euler
- Institute for Ophthalmic Research, University of Tübingen, 72076 Tübingen, Germany; Werner Reichardt Centre for Integrative Neuroscience, University of Tübingen, 72076 Tübingen, Germany.
| | - Anna L Vlasits
- Institute for Ophthalmic Research, University of Tübingen, 72076 Tübingen, Germany; Werner Reichardt Centre for Integrative Neuroscience, University of Tübingen, 72076 Tübingen, Germany; Department of Ophthalmology & Visual Sciences, University of Illinois, Chicago, IL 60603, USA.
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3
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Hsiang JC, Shen N, Soto F, Kerschensteiner D. Distributed feature representations of natural stimuli across parallel retinal pathways. Nat Commun 2024; 15:1920. [PMID: 38429280 PMCID: PMC10907388 DOI: 10.1038/s41467-024-46348-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 02/22/2024] [Indexed: 03/03/2024] Open
Abstract
How sensory systems extract salient features from natural environments and organize them across neural pathways is unclear. Combining single-cell and population two-photon calcium imaging in mice, we discover that retinal ON bipolar cells (second-order neurons of the visual system) are divided into two blocks of four types. The two blocks distribute temporal and spatial information encoding, respectively. ON bipolar cell axons co-stratify within each block, but separate laminarly between them (upper block: diverse temporal, uniform spatial tuning; lower block: diverse spatial, uniform temporal tuning). ON bipolar cells extract temporal and spatial features similarly from artificial and naturalistic stimuli. In addition, they differ in sensitivity to coherent motion in naturalistic movies. Motion information is distributed across ON bipolar cells in the upper and the lower blocks, multiplexed with temporal and spatial contrast, independent features of natural scenes. Comparing the responses of different boutons within the same arbor, we find that axons of all ON bipolar cell types function as computational units. Thus, our results provide insights into the visual feature extraction from naturalistic stimuli and reveal how structural and functional organization cooperate to generate parallel ON pathways for temporal and spatial information in the mammalian retina.
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Affiliation(s)
- Jen-Chun Hsiang
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Ning Shen
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Florentina Soto
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Daniel Kerschensteiner
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA.
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO, 63110, USA.
- Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, MO, 63110, USA.
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4
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Swygart D, Yu WQ, Takeuchi S, Wong ROL, Schwartz GW. A presynaptic source drives differing levels of surround suppression in two mouse retinal ganglion cell types. Nat Commun 2024; 15:599. [PMID: 38238324 PMCID: PMC10796971 DOI: 10.1038/s41467-024-44851-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 01/05/2024] [Indexed: 01/22/2024] Open
Abstract
In early sensory systems, cell-type diversity generally increases from the periphery into the brain, resulting in a greater heterogeneity of responses to the same stimuli. Surround suppression is a canonical visual computation that begins within the retina and is found at varying levels across retinal ganglion cell types. Our results show that heterogeneity in the level of surround suppression occurs subcellularly at bipolar cell synapses. Using single-cell electrophysiology and serial block-face scanning electron microscopy, we show that two retinal ganglion cell types exhibit very different levels of surround suppression even though they receive input from the same bipolar cell types. This divergence of the bipolar cell signal occurs through synapse-specific regulation by amacrine cells at the scale of tens of microns. These findings indicate that each synapse of a single bipolar cell can carry a unique visual signal, expanding the number of possible functional channels at the earliest stages of visual processing.
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Affiliation(s)
- David Swygart
- Northwestern University Interdepartmental Neuroscience Program, Chicago, IL, USA
| | - Wan-Qing Yu
- Department of Biological Structure, University of Washington, Seattle, WA, USA
| | - Shunsuke Takeuchi
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan
| | - Rachel O L Wong
- Department of Biological Structure, University of Washington, Seattle, WA, USA
| | - Gregory W Schwartz
- Northwestern University Interdepartmental Neuroscience Program, Chicago, IL, USA.
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
- Department of Neurobiology, Weinberg College of Arts and Sciences, Northwestern University, Chicago, IL, USA.
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5
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He L, He Y, Ma L, Huang T. A theoretical model reveals specialized synaptic depressions and temporal frequency tuning in retinal parallel channels. Front Comput Neurosci 2022; 16:1034446. [DOI: 10.3389/fncom.2022.1034446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 10/27/2022] [Indexed: 11/18/2022] Open
Abstract
In the Outer Plexiform Layer of a retina, a cone pedicle provides synaptic inputs for multiple cone bipolar cell (CBC) subtypes so that each subtype formats a parallelized processing channel to filter visual features from the environment. Due to the diversity of short-term depressions among cone-CBC contacts, these channels have different temporal frequency tunings. Here, we propose a theoretical model based on the hierarchy Linear-Nonlinear-Synapse framework to link the synaptic depression and the neural activities of the cone-CBC circuit. The model successfully captures various frequency tunings of subtype-specialized channels and infers synaptic depression recovery time constants inside circuits. Furthermore, the model can predict frequency-tuning behaviors based on synaptic activities. With the prediction of region-specialized UV cone parallel channels, we suggest the acute zone in the zebrafish retina supports detecting light-off events at high temporal frequencies.
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6
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Sharma P, Ramachandran R. Retina regeneration: lessons from vertebrates. OXFORD OPEN NEUROSCIENCE 2022; 1:kvac012. [PMID: 38596712 PMCID: PMC10913848 DOI: 10.1093/oons/kvac012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 05/24/2022] [Accepted: 06/25/2022] [Indexed: 04/11/2024]
Abstract
Unlike mammals, vertebrates such as fishes and frogs exhibit remarkable tissue regeneration including the central nervous system. Retina being part of the central nervous system has attracted the interest of several research groups to explore its regenerative ability in different vertebrate models including mice. Fishes and frogs completely restore the size, shape and tissue structure of an injured retina. Several studies have unraveled molecular mechanisms underlying retina regeneration. In teleosts, soon after injury, the Müller glial cells of the retina reprogram to form a proliferating population of Müller glia-derived progenitor cells capable of differentiating into various neural cell types and Müller glia. In amphibians, the transdifferentiation of retinal pigment epithelium and differentiation of ciliary marginal zone cells contribute to retina regeneration. In chicks and mice, supplementation with external growth factors or genetic modifications cause a partial regenerative response in the damaged retina. The initiation of retina regeneration is achieved through sequential orchestration of gene expression through controlled modulations in the genetic and epigenetic landscape of the progenitor cells. Several developmental biology pathways are turned on during the Müller glia reprogramming, retinal pigment epithelium transdifferentiation and ciliary marginal zone differentiation. Further, several tumorigenic pathways and gene expression events also contribute to the complete regeneration cascade of events. In this review, we address the various retinal injury paradigms and subsequent gene expression events governed in different vertebrate species. Further, we compared how vertebrates such as teleost fishes and amphibians can achieve excellent regenerative responses in the retina compared with their mammalian counterparts.
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Affiliation(s)
- Poonam Sharma
- Department of Biological Sciences, Indian Institute of Science Education and Research, Mohali, Knowledge City, SAS Nagar, Sector 81, Manauli PO, 140306 Mohali, Punjab, India
| | - Rajesh Ramachandran
- Department of Biological Sciences, Indian Institute of Science Education and Research, Mohali, Knowledge City, SAS Nagar, Sector 81, Manauli PO, 140306 Mohali, Punjab, India
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7
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Bartel P, Yoshimatsu T, Janiak FK, Baden T. Spectral inference reveals principal cone-integration rules of the zebrafish inner retina. Curr Biol 2021; 31:5214-5226.e4. [PMID: 34653362 PMCID: PMC8669161 DOI: 10.1016/j.cub.2021.09.047] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 09/09/2021] [Accepted: 09/17/2021] [Indexed: 01/05/2023]
Abstract
Retinal bipolar cells integrate cone signals at dendritic and axonal sites. The axonal route, involving amacrine cells, remains largely uncharted. However, because cone types differ in their spectral sensitivities, insights into bipolar cells' cone integration might be gained based on their spectral tunings. We therefore recorded in vivo responses of bipolar cell presynaptic terminals in larval zebrafish to widefield but spectrally resolved flashes of light and mapped the results onto spectral responses of the four cones. This "spectral circuit mapping" allowed explaining ∼95% of the spectral and temporal variance of bipolar cell responses in a simple linear model, thereby revealing several notable integration rules of the inner retina. Bipolar cells were dominated by red-cone inputs, often alongside equal sign inputs from blue and green cones. In contrast, UV-cone inputs were uncorrelated with those of the remaining cones. This led to a new axis of spectral opponency where red-, green-, and blue-cone "Off" circuits connect to "natively-On" UV-cone circuits in the outermost fraction of the inner plexiform layer-much as how key color opponent circuits are established in mammals. Beyond this, and despite substantial temporal diversity that was not present in the cones, bipolar cell spectral tunings were surprisingly simple. They either approximately resembled both opponent and non-opponent spectral motifs already present in the cones or exhibited a stereotyped non-opponent broadband response. In this way, bipolar cells not only preserved the efficient spectral representations in the cones but also diversified them to set up a total of six dominant spectral motifs, which included three axes of spectral opponency.
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Affiliation(s)
- Philipp Bartel
- School of Life Sciences, University of Sussex, Biology Road, BN1 9QG Brighton, UK
| | - Takeshi Yoshimatsu
- School of Life Sciences, University of Sussex, Biology Road, BN1 9QG Brighton, UK
| | - Filip K Janiak
- School of Life Sciences, University of Sussex, Biology Road, BN1 9QG Brighton, UK
| | - Tom Baden
- School of Life Sciences, University of Sussex, Biology Road, BN1 9QG Brighton, UK; Institute of Ophthalmic Research, University of Tübingen, Elfriede-Aulhorn-Strasse 7, 72076 Tübingen, Germany.
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8
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Ezra-Tsur E, Amsalem O, Ankri L, Patil P, Segev I, Rivlin-Etzion M. Realistic retinal modeling unravels the differential role of excitation and inhibition to starburst amacrine cells in direction selectivity. PLoS Comput Biol 2021; 17:e1009754. [PMID: 34968385 PMCID: PMC8754344 DOI: 10.1371/journal.pcbi.1009754] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 01/12/2022] [Accepted: 12/14/2021] [Indexed: 11/19/2022] Open
Abstract
Retinal direction-selectivity originates in starburst amacrine cells (SACs), which display a centrifugal preference, responding with greater depolarization to a stimulus expanding from soma to dendrites than to a collapsing stimulus. Various mechanisms were hypothesized to underlie SAC centrifugal preference, but dissociating them is experimentally challenging and the mechanisms remain debatable. To address this issue, we developed the Retinal Stimulation Modeling Environment (RSME), a multifaceted data-driven retinal model that encompasses detailed neuronal morphology and biophysical properties, retina-tailored connectivity scheme and visual input. Using a genetic algorithm, we demonstrated that spatiotemporally diverse excitatory inputs-sustained in the proximal and transient in the distal processes-are sufficient to generate experimentally validated centrifugal preference in a single SAC. Reversing these input kinetics did not produce any centrifugal-preferring SAC. We then explored the contribution of SAC-SAC inhibitory connections in establishing the centrifugal preference. SAC inhibitory network enhanced the centrifugal preference, but failed to generate it in its absence. Embedding a direction selective ganglion cell (DSGC) in a SAC network showed that the known SAC-DSGC asymmetric connectivity by itself produces direction selectivity. Still, this selectivity is sharpened in a centrifugal-preferring SAC network. Finally, we use RSME to demonstrate the contribution of SAC-SAC inhibitory connections in mediating direction selectivity and recapitulate recent experimental findings. Thus, using RSME, we obtained a mechanistic understanding of SACs' centrifugal preference and its contribution to direction selectivity.
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Affiliation(s)
- Elishai Ezra-Tsur
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
- Department of Mathematics and Computer Science, The Open University of Israel, Ra’anana, Israel
| | - Oren Amsalem
- Department of Neurobiology, Hebrew University of Jerusalem, Jerusalem, Israel
| | - Lea Ankri
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Pritish Patil
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Idan Segev
- Department of Neurobiology, Hebrew University of Jerusalem, Jerusalem, Israel
- Edmond and Lily Safra Center for Brain Sciences, Hebrew University of Jerusalem, Jerusalem, Israel
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9
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Pottackal J, Singer JH, Demb JB. Computational and Molecular Properties of Starburst Amacrine Cell Synapses Differ With Postsynaptic Cell Type. Front Cell Neurosci 2021; 15:660773. [PMID: 34381333 PMCID: PMC8351878 DOI: 10.3389/fncel.2021.660773] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 06/08/2021] [Indexed: 11/22/2022] Open
Abstract
A presynaptic neuron can increase its computational capacity by transmitting functionally distinct signals to each of its postsynaptic cell types. To determine whether such computational specialization occurs over fine spatial scales within a neurite arbor, we investigated computation at output synapses of the starburst amacrine cell (SAC), a critical component of the classical direction-selective (DS) circuit in the retina. The SAC is a non-spiking interneuron that co-releases GABA and acetylcholine and forms closely spaced (<5 μm) inhibitory synapses onto two postsynaptic cell types: DS ganglion cells (DSGCs) and neighboring SACs. During dynamic optogenetic stimulation of SACs in mouse retina, whole-cell recordings of inhibitory postsynaptic currents revealed that GABAergic synapses onto DSGCs exhibit stronger low-pass filtering than those onto neighboring SACs. Computational analyses suggest that this filtering difference can be explained primarily by presynaptic properties, rather than those of the postsynaptic cells per se. Consistent with functionally diverse SAC presynapses, blockade of N-type voltage-gated calcium channels abolished GABAergic currents in SACs but only moderately reduced GABAergic and cholinergic currents in DSGCs. These results jointly demonstrate how specialization of synaptic outputs could enhance parallel processing in a compact interneuron over fine spatial scales. Moreover, the distinct transmission kinetics of GABAergic SAC synapses are poised to support the functional diversity of inhibition within DS circuitry.
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Affiliation(s)
- Joseph Pottackal
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT, United States.,Department of Biology, University of Maryland, College Park, College Park, MD, United States
| | - Joshua H Singer
- Department of Biology, University of Maryland, College Park, College Park, MD, United States
| | - Jonathan B Demb
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT, United States.,Department of Ophthalmology and Visual Science, Yale University, New Haven, CT, United States.,Department of Cellular and Molecular Physiology, Yale University, New Haven, CT, United States.,Department of Neuroscience, Yale University, New Haven, CT, United States
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10
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Schröder C, Oesterle J, Berens P, Yoshimatsu T, Baden T. Distinct synaptic transfer functions in same-type photoreceptors. eLife 2021; 10:e67851. [PMID: 34269177 PMCID: PMC8318593 DOI: 10.7554/elife.67851] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 07/13/2021] [Indexed: 01/22/2023] Open
Abstract
Many sensory systems use ribbon-type synapses to transmit their signals to downstream circuits. The properties of this synaptic transfer fundamentally dictate which aspects in the original stimulus will be accentuated or suppressed, thereby partially defining the detection limits of the circuit. Accordingly, sensory neurons have evolved a wide variety of ribbon geometries and vesicle pool properties to best support their diverse functional requirements. However, the need for diverse synaptic functions does not only arise across neuron types, but also within. Here we show that UV-cones, a single type of photoreceptor of the larval zebrafish eye, exhibit striking differences in their synaptic ultrastructure and consequent calcium to glutamate transfer function depending on their location in the eye. We arrive at this conclusion by combining serial section electron microscopy and simultaneous 'dual-colour' two-photon imaging of calcium and glutamate signals from the same synapse in vivo. We further use the functional dataset to fit a cascade-like model of the ribbon synapse with different vesicle pool sizes, transfer rates, and other synaptic properties. Exploiting recent developments in simulation-based inference, we obtain full posterior estimates for the parameters and compare these across different retinal regions. The model enables us to extrapolate to new stimuli and to systematically investigate different response behaviours of various ribbon configurations. We also provide an interactive, easy-to-use version of this model as an online tool. Overall, we show that already on the synaptic level of single-neuron types there exist highly specialised mechanisms which are advantageous for the encoding of different visual features.
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Affiliation(s)
- Cornelius Schröder
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- Center for Integrative Neuroscience, University of TübingenTübingenGermany
| | - Jonathan Oesterle
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- Center for Integrative Neuroscience, University of TübingenTübingenGermany
| | - Philipp Berens
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- Center for Integrative Neuroscience, University of TübingenTübingenGermany
- Bernstein Center for Computational Neuroscience,Centre for Integrative Neuroscience, all: University of TubingenTubingenGermany
| | | | - Tom Baden
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- School of Life Sciences,University of SussexSussexUnited Kingdom
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11
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Abstract
Species throughout the animal kingdom use the Earth's magnetic field (MF) to navigate using either or both of two mechanisms. The first relies on magnetite crystals in tissue where their magnetic moments align with the MF to transduce a signal transmitted to the central nervous system. The second and the subject of this paper involves cryptochrome (CRY) proteins located in cone photoreceptors distributed across the retina, studied most extensively in birds. According to the "Radical Pair Mechanism" (RPM), blue/UV light excites CRY's flavin cofactor (FAD) to generate radical pairs whose singlet-to-triplet interconversion rate is modulated by an external MF. The signaling product of the RPM produces an impression of the field across the retinal surface. In birds, the resulting signal on the optic nerve is transmitted along the thalamofugal pathway to the primary visual cortex, which projects to brain regions concerned with image processing, memory, and executive function. The net result is a bird's orientation to the MF's inclination: its vector angle relative to the Earth's surface. The quality of ambient light (e.g., polarization) provides additional input to the compass. In birds, the Type IV CRY isoform appears pivotal to the compass, given its positioning within retinal cones; a cytosolic location therein indicating no role in the circadian clock; relatively steady diurnal levels (unlike Type II CRY's cycling); and a full complement of FAD (essential for photosensitivity). The evidence indicates that mammalian Type II CRY isoforms play a light-independent role in the cellular molecular clock without a photoreceptive function.
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Affiliation(s)
| | - Joseph Brain
- Environmental Physiology, Molecular, and Integrative Physiological Sciences Program, Department of Environmental Health, Harvard T. H. Chan School of Public Health, Boston, Massachusetts
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12
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Yedutenko M, Howlett MHC, Kamermans M. High Contrast Allows the Retina to Compute More Than Just Contrast. Front Cell Neurosci 2021; 14:595193. [PMID: 33519381 PMCID: PMC7843368 DOI: 10.3389/fncel.2020.595193] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Accepted: 12/22/2020] [Indexed: 11/29/2022] Open
Abstract
The goal of sensory processing is to represent the environment of an animal. All sensory systems share a similar constraint: they need to encode a wide range of stimulus magnitudes within their narrow neuronal response range. The most efficient way, exploited by even the simplest nervous systems, is to encode relative changes in stimulus magnitude rather than the absolute magnitudes. For instance, the retina encodes contrast, which are the variations of light intensity occurring in time and in space. From this perspective, it is easy to understand why the bright plumage of a moving bird gains a lot of attention, while an octopus remains motionless and mimics its surroundings for concealment. Stronger contrasts simply cause stronger visual signals. However, the gains in retinal performance associated with higher contrast are far more than what can be attributed to just a trivial linear increase in signal strength. Here we discuss how this improvement in performance is reflected throughout different parts of the neural circuitry, within its neural code and how high contrast activates many non-linear mechanisms to unlock several sophisticated retinal computations that are virtually impossible in low contrast conditions.
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Affiliation(s)
- Matthew Yedutenko
- Retinal Signal Processing Lab, Netherlands Institute for Neuroscience, Amsterdam, Netherlands
| | - Marcus H. C. Howlett
- Retinal Signal Processing Lab, Netherlands Institute for Neuroscience, Amsterdam, Netherlands
| | - Maarten Kamermans
- Retinal Signal Processing Lab, Netherlands Institute for Neuroscience, Amsterdam, Netherlands
- Department of Biomedical Physics and Biomedical Optics, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, Netherlands
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13
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Oesterle J, Behrens C, Schröder C, Hermann T, Euler T, Franke K, Smith RG, Zeck G, Berens P. Bayesian inference for biophysical neuron models enables stimulus optimization for retinal neuroprosthetics. eLife 2020; 9:e54997. [PMID: 33107821 PMCID: PMC7673784 DOI: 10.7554/elife.54997] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Accepted: 10/26/2020] [Indexed: 01/02/2023] Open
Abstract
While multicompartment models have long been used to study the biophysics of neurons, it is still challenging to infer the parameters of such models from data including uncertainty estimates. Here, we performed Bayesian inference for the parameters of detailed neuron models of a photoreceptor and an OFF- and an ON-cone bipolar cell from the mouse retina based on two-photon imaging data. We obtained multivariate posterior distributions specifying plausible parameter ranges consistent with the data and allowing to identify parameters poorly constrained by the data. To demonstrate the potential of such mechanistic data-driven neuron models, we created a simulation environment for external electrical stimulation of the retina and optimized stimulus waveforms to target OFF- and ON-cone bipolar cells, a current major problem of retinal neuroprosthetics.
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Affiliation(s)
- Jonathan Oesterle
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
| | - Christian Behrens
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
| | - Cornelius Schröder
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
| | - Thoralf Hermann
- Naturwissenschaftliches und Medizinisches Institut an der Universität TübingenReutlingenGermany
| | - Thomas Euler
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- Center for Integrative Neuroscience, University of TübingenTübingenGermany
- Bernstein Center for Computational Neuroscience, University of TübingenTübingenGermany
| | - Katrin Franke
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- Bernstein Center for Computational Neuroscience, University of TübingenTübingenGermany
| | - Robert G Smith
- Department of Neuroscience, University of PennsylvaniaPhiladelphiaUnited States
| | - Günther Zeck
- Naturwissenschaftliches und Medizinisches Institut an der Universität TübingenReutlingenGermany
| | - Philipp Berens
- Institute for Ophthalmic Research, University of TübingenTübingenGermany
- Center for Integrative Neuroscience, University of TübingenTübingenGermany
- Bernstein Center for Computational Neuroscience, University of TübingenTübingenGermany
- Institute for Bioinformatics and Medical Informatics, University of TübingenTübingenGermany
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14
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Ryan TM, Hinojosa AJ, Vroman R, Papasavvas C, Lagnado L. Correction of z-motion artefacts to allow population imaging of synaptic activity in behaving mice. J Physiol 2020; 598:1809-1827. [PMID: 32020615 PMCID: PMC7318612 DOI: 10.1113/jp278957] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 01/24/2020] [Indexed: 11/08/2022] Open
Abstract
KEY POINTS Motion artefacts associated with motor behaviour are an inevitable problem of multiphoton imaging in awake behaving animals, particularly when imaging synapses. Correction of axial motion artefacts usually requires volumetric imaging resulting in slower rates of acquisition. We describe a method to correct z-motion artefacts that is easy to implement and allows population imaging of synaptic activity while scanning a single plane in a standard multiphoton microscope. The method uses a reference volume acquired in two colour channels - an activity reporter and an anatomical marker of blood vessels. The procedure estimates the z-displacement in every frame and applies an intensity correction in which the z intensity profile for each synapse is modelled as a Moffat function. We demonstrate that the method allows synaptic calcium signals to be collected from populations of synaptic boutons in mouse primary visual cortex during locomotion. ABSTRACT Functional imaging of head-fixed, behaving mice using two-photon imaging of fluorescent activity reporters has become a powerful tool for studying the function of the brain. Motion artefacts are an inevitable problem during such experiments and are routinely corrected for in x and y dimensions. However, axial (z) shifts of several microns can also occur, leading to intensity fluctuations in structures such as synapses that are small compared to the axial point-spread function of the microscope. Here we present a simple strategy to correct z-motion artefacts arising over the course of a time-series experiment in a single optical plane. Displacement in z was calculated using dye-filled blood vessels as an anatomical marker, providing high contrast images and accuracy to within ∼0.1 µm. The axial profiles of ROIs corresponding to synapses were described using a Moffat function and this 'ROI-spread function' used to correct activity traces on an ROI-by-ROI basis. We demonstrate the accuracy and utility of the procedures in simulation experiments using fluorescent beads and then apply them to correcting measurements of synaptic activity in populations of vasoactive-intestinal peptide (VIP) interneurons expressing the synaptic reporter SyGCaMP6f. Correction of z-motion artefacts had a substantial impact on the apparent correlation between synaptic activity and running speed, demonstrating the importance of correcting these when performing imaging experiments in awake mice.
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Affiliation(s)
- Thomas Michael Ryan
- Sussex NeuroscienceSchool of Life SciencesUniversity of SussexBrightonBN1 9QGUK
| | | | - Rozan Vroman
- Sussex NeuroscienceSchool of Life SciencesUniversity of SussexBrightonBN1 9QGUK
| | | | - Leon Lagnado
- Sussex NeuroscienceSchool of Life SciencesUniversity of SussexBrightonBN1 9QGUK
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15
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Abstract
Visual stimuli can evoke complex behavioral responses, but the underlying streams of neural activity in mammalian brains are difficult to follow because of their size. Here, I review the visual system of zebrafish larvae, highlighting where recent experimental evidence has localized the functional steps of visuomotor transformations to specific brain areas. The retina of a larva encodes behaviorally relevant visual information in neural activity distributed across feature-selective ganglion cells such that signals representing distinct stimulus properties arrive in different areas or layers of the brain. Motor centers in the hindbrain encode motor variables that are precisely tuned to behavioral needs within a given stimulus setting. Owing to rapid technological progress, larval zebrafish provide unique opportunities for obtaining a comprehensive understanding of the intermediate processing steps occurring between visual and motor centers, revealing how visuomotor transformations are implemented in a vertebrate brain.
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Affiliation(s)
- Johann H. Bollmann
- Developmental Biology, Institute of Biology I, Faculty of Biology, and Bernstein Center Freiburg, University of Freiburg, 79104 Freiburg, Germany
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16
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Pangrsic T, Singer JH, Koschak A. Voltage-Gated Calcium Channels: Key Players in Sensory Coding in the Retina and the Inner Ear. Physiol Rev 2019; 98:2063-2096. [PMID: 30067155 DOI: 10.1152/physrev.00030.2017] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Calcium influx through voltage-gated Ca (CaV) channels is the first step in synaptic transmission. This review concerns CaV channels at ribbon synapses in primary sense organs and their specialization for efficient coding of stimuli in the physical environment. Specifically, we describe molecular, biochemical, and biophysical properties of the CaV channels in sensory receptor cells of the retina, cochlea, and vestibular apparatus, and we consider how such properties might change over the course of development and contribute to synaptic plasticity. We pay particular attention to factors affecting the spatial arrangement of CaV channels at presynaptic, ribbon-type active zones, because the spatial relationship between CaV channels and release sites has been shown to affect synapse function critically in a number of systems. Finally, we review identified synaptopathies affecting sensory systems and arising from dysfunction of L-type, CaV1.3, and CaV1.4 channels or their protein modulatory elements.
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Affiliation(s)
- Tina Pangrsic
- Synaptic Physiology of Mammalian Vestibular Hair Cells Group, Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen and Auditory Neuroscience Group, Max Planck Institute of Experimental Medicine , Göttingen, Germany ; Department of Biology, University of Maryland , College Park, Maryland ; and Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck , Innsbruck , Austria
| | - Joshua H Singer
- Synaptic Physiology of Mammalian Vestibular Hair Cells Group, Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen and Auditory Neuroscience Group, Max Planck Institute of Experimental Medicine , Göttingen, Germany ; Department of Biology, University of Maryland , College Park, Maryland ; and Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck , Innsbruck , Austria
| | - Alexandra Koschak
- Synaptic Physiology of Mammalian Vestibular Hair Cells Group, Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen and Auditory Neuroscience Group, Max Planck Institute of Experimental Medicine , Göttingen, Germany ; Department of Biology, University of Maryland , College Park, Maryland ; and Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck , Innsbruck , Austria
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17
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Baden T, James B, Zimmermann MJY, Bartel P, Grijseels D, Euler T, Lagnado L, Maravall M. Spikeling: A low-cost hardware implementation of a spiking neuron for neuroscience teaching and outreach. PLoS Biol 2018; 16:e2006760. [PMID: 30365493 PMCID: PMC6221365 DOI: 10.1371/journal.pbio.2006760] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 11/07/2018] [Indexed: 11/26/2022] Open
Abstract
Understanding how neurons encode and compute information is fundamental to our study of the brain, but opportunities for hands-on experience with neurophysiological techniques on live neurons are scarce in science education. Here, we present Spikeling, an open source in silico implementation of a spiking neuron that costs £25 and mimics a wide range of neuronal behaviours for classroom education and public neuroscience outreach. Spikeling is based on an Arduino microcontroller running the computationally efficient Izhikevich model of a spiking neuron. The microcontroller is connected to input ports that simulate synaptic excitation or inhibition, to dials controlling current injection and noise levels, to a photodiode that makes Spikeling light sensitive, and to a light-emitting diode (LED) and speaker that allows spikes to be seen and heard. Output ports provide access to variables such as membrane potential for recording in experiments or digital signals that can be used to excite other connected Spikelings. These features allow for the intuitive exploration of the function of neurons and networks mimicking electrophysiological experiments. We also report our experience of using Spikeling as a teaching tool for undergraduate and graduate neuroscience education in Nigeria and the United Kingdom.
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Affiliation(s)
- Tom Baden
- School of Life Sciences, University of Sussex, Brighton, United Kingdom
- Institute for Ophthalmic Research, University of Tuebingen, Tuebingen, Germany
- TReND in Africa gUG, Brighton, United Kingdom
| | - Ben James
- School of Life Sciences, University of Sussex, Brighton, United Kingdom
| | | | - Phillip Bartel
- School of Life Sciences, University of Sussex, Brighton, United Kingdom
| | - Dorieke Grijseels
- School of Psychology, University of Sussex, Brighton, United Kingdom
| | - Thomas Euler
- Institute for Ophthalmic Research, University of Tuebingen, Tuebingen, Germany
- Center for Integrative Neuroscience, University of Tuebingen, Tuebingen, Germany
| | - Leon Lagnado
- School of Life Sciences, University of Sussex, Brighton, United Kingdom
| | - Miguel Maravall
- School of Life Sciences, University of Sussex, Brighton, United Kingdom
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18
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Broussard GJ, Liang Y, Fridman M, Unger EK, Meng G, Xiao X, Ji N, Petreanu L, Tian L. In vivo measurement of afferent activity with axon-specific calcium imaging. Nat Neurosci 2018; 21:1272-1280. [PMID: 30127424 PMCID: PMC6697169 DOI: 10.1038/s41593-018-0211-4] [Citation(s) in RCA: 142] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Accepted: 07/11/2018] [Indexed: 11/12/2022]
Abstract
In vivo calcium imaging from axons provides direct interrogation of afferent neural activity, informing neural representations that a local circuit receives. Unlike in somata and dendrites, axonal recording of neural activity--both electrically and optically--has been difficult to achieve, thus preventing comprehensive understanding of neuronal circuit function. Here, we developed an active transportation strategy to enrich GCaMP6, a genetically encoded calcium indicator (GECI), uniformly in axons with sufficient brightness, signal-to-noise ratio, and photostability to allow robust, structure-specific imaging of pre-synaptic activity in awake mice. Axon-targeted GCaMP6 (axon-GCaMP6) enables frame-to-frame correlation for motion correction in axons and permits subcellular-resolution recording of axonal activity in previously inaccessible deep brain areas. We used axon-GCaMP6 to record layer-specific local afferents without contamination from somata and intermingled dendrites in the cortex. We expect axon-GCaMP6 will facilitate new applications in investigating afferent signals relayed by genetically defined neuronal populations within and across specific brain regions.
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Affiliation(s)
- Gerard Joey Broussard
- Department of Biochemistry and Molecular Medicine, University of California Davis, Davis, CA, USA
| | - Yajie Liang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Elizabeth K Unger
- Department of Biochemistry and Molecular Medicine, University of California Davis, Davis, CA, USA
| | - Guanghan Meng
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Department of Physics, Department of Molecular & Cellular Biology, University of California Berkeley, Berkeley, CA, USA
| | - Xian Xiao
- Department of Biochemistry and Molecular Medicine, University of California Davis, Davis, CA, USA.,Westlake Institute for Advanced Study, Hangzhou, China
| | - Na Ji
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Department of Physics, Department of Molecular & Cellular Biology, University of California Berkeley, Berkeley, CA, USA
| | | | - Lin Tian
- Department of Biochemistry and Molecular Medicine, University of California Davis, Davis, CA, USA.
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19
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Murphy-Baum BL, Taylor WR. Diverse inhibitory and excitatory mechanisms shape temporal tuning in transient OFF α ganglion cells in the rabbit retina. J Physiol 2018; 596:477-495. [PMID: 29222817 DOI: 10.1113/jp275195] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 11/23/2017] [Indexed: 11/08/2022] Open
Abstract
KEY POINTS Neurons combine excitatory and inhibitory signals to perform computations. In the retina, interactions between excitation and inhibition enable neurons to detect specific visual features. We describe how several excitatory and inhibitory mechanisms work together to allow transient OFF α ganglion cells in the rabbit retina to respond selectively to high temporal frequencies and thus detect faster image motion. The weightings of these different mechanisms change with the contrast and spatiotemporal properties of the visual input, and thereby support temporal tuning in α cells over a range of visual conditions. The results help us understand how ganglion cells selectively integrate excitatory and inhibitory signals to extract specific information from the visual input. ABSTRACT The 20 to 30 types of ganglion cell in the mammalian retina represent parallel signalling pathways that convey different information to the brain. α ganglion cells are selective for high temporal frequencies in visual inputs, which makes them particularly sensitive to rapid motion. Although α ganglion cells have been studied in several species, the synaptic basis for their selective temporal tuning remains unclear. Here, we analyse excitatory synaptic inputs to transient OFF α ganglion cells (t-OFF α GCs) in the rabbit retina. We show that convergence of excitatory and inhibitory synaptic inputs within the bipolar cell terminals presynaptic to the t-OFF α GCs shifts the temporal tuning to higher temporal frequencies. GABAergic inhibition suppresses the excitatory input at low frequencies, but potentiates it at high frequencies. Crossover glycinergic inhibition and sodium channel activity in the presynaptic bipolar cells also potentiate high frequency excitatory inputs. We found differences in the spatial and temporal properties, and contrast sensitivities of these mechanisms. These differences in stimulus selectivity allow these mechanisms to generate bandpass temporal tuning of t-OFF α GCs over a range of visual conditions.
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Affiliation(s)
- Benjamin L Murphy-Baum
- Casey Eye Institute, Department of Ophthalmology, Oregon Health and Science University, 3375 SW Terwilliger Boulevard, Portland, OR, 97239, USA
| | - W Rowland Taylor
- Casey Eye Institute, Department of Ophthalmology, Oregon Health and Science University, 3375 SW Terwilliger Boulevard, Portland, OR, 97239, USA
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20
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Eich ML, Dembla E, Wahl S, Dembla M, Schwarz K, Schmitz F. The Calcineurin-Binding, Activity-Dependent Splice Variant Dynamin1xb Is Highly Enriched in Synapses in Various Regions of the Central Nervous System. Front Mol Neurosci 2017; 10:230. [PMID: 28790889 PMCID: PMC5524891 DOI: 10.3389/fnmol.2017.00230] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2017] [Accepted: 07/06/2017] [Indexed: 12/22/2022] Open
Abstract
In the present study, we generated and characterized a splice site-specific monoclonal antibody that selectively detects the calcineurin-binding dynamin1 splice variant dynamin1xb. Calcineurin is a Ca2+-regulated phosphatase that enhances dynamin1 activity and is an important Ca2+-sensing mediator of homeostatic synaptic plasticity in neurons. Using this dynamin1xb-specific antibody, we found dynamin1xb highly enriched in synapses of all analyzed brain regions. In photoreceptor ribbon synapses, dynamin1xb was enriched in close vicinity to the synaptic ribbon in a manner indicative of a peri-active zone immunolabeling. Interestingly, in dark-adapted mice we observed an enhanced and selective enrichment of dynamin1xb in both synaptic layers of the retina in comparison to light-adapted mice. This could be due to an illumination-dependent recruitment of dynamin1xb to retinal synapses and/or due to a darkness-induced increase of dynamin1xb biosynthesis. These latter findings indicate that dynamin1xb is part of a versatile and highly adjustable, activity-regulated endocytic synaptic machinery.
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Affiliation(s)
- Marie-Lisa Eich
- Department of Neuroanatomy, Medical School Homburg/Saar, Institute for Anatomy and Cell Biology, Saarland UniversityHomburg/Saar, Germany
| | - Ekta Dembla
- Department of Neuroanatomy, Medical School Homburg/Saar, Institute for Anatomy and Cell Biology, Saarland UniversityHomburg/Saar, Germany
| | - Silke Wahl
- Department of Neuroanatomy, Medical School Homburg/Saar, Institute for Anatomy and Cell Biology, Saarland UniversityHomburg/Saar, Germany
| | - Mayur Dembla
- Department of Neuroanatomy, Medical School Homburg/Saar, Institute for Anatomy and Cell Biology, Saarland UniversityHomburg/Saar, Germany
| | - Karin Schwarz
- Department of Neuroanatomy, Medical School Homburg/Saar, Institute for Anatomy and Cell Biology, Saarland UniversityHomburg/Saar, Germany
| | - Frank Schmitz
- Department of Neuroanatomy, Medical School Homburg/Saar, Institute for Anatomy and Cell Biology, Saarland UniversityHomburg/Saar, Germany
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21
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Abstract
The zebrafish (Danio rerio) possesses a vertebrate-type retina that is extraordinarily conserved in evolution. This well-organized and anatomically easily accessible part of the central nervous system has been widely investigated in zebrafish, promoting general understanding of retinal development, morphology, function and associated diseases. Over the recent years, genome and protein engineering as well as imaging techniques have experienced revolutionary advances and innovations, creating new possibilities and methods to study zebrafish development and function. In this review, we focus on some of these emerging technologies and how they may impact retinal research in the future. We place an emphasis on genetic techniques, such as transgenic approaches and the revolutionizing new possibilities in genome editing.
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Affiliation(s)
- Stephanie Niklaus
- a Institute of Molecular Life Sciences , University of Zurich , Zurich , Switzerland.,b Life Science Zurich Graduate Program - Neuroscience , Zurich , Switzerland
| | - Stephan C F Neuhauss
- a Institute of Molecular Life Sciences , University of Zurich , Zurich , Switzerland
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22
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Chapot CA, Euler T, Schubert T. How do horizontal cells 'talk' to cone photoreceptors? Different levels of complexity at the cone-horizontal cell synapse. J Physiol 2017; 595:5495-5506. [PMID: 28378516 DOI: 10.1113/jp274177] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Accepted: 03/27/2017] [Indexed: 11/08/2022] Open
Abstract
The first synapse of the retina plays a fundamental role in the visual system. Due to its importance, it is critical that it encodes information from the outside world with the greatest accuracy and precision possible. Cone photoreceptor axon terminals contain many individual synaptic sites, each represented by a presynaptic structure called a 'ribbon'. These synapses are both highly sophisticated and conserved. Each ribbon relays the light signal to one ON cone bipolar cell and several OFF cone bipolar cells, while two dendritic processes from a GABAergic interneuron, the horizontal cell, modulate the cone output via parallel feedback mechanisms. The presence of these three partners within a single synapse has raised numerous questions, and its anatomical and functional complexity is still only partially understood. However, the understanding of this synapse has recently evolved, as a consequence of progress in understanding dendritic signal processing and its role in facilitating global versus local signalling. Indeed, for the downstream retinal network, dendritic processing in horizontal cells may be essential, as they must support important functional operations such as contrast enhancement, which requires spatial averaging of the photoreceptor array, while at the same time preserving accurate spatial information. Here, we review recent progress made towards a better understanding of the cone synapse, with an emphasis on horizontal cell function, and discuss why such complexity might be necessary for early visual processing.
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Affiliation(s)
- Camille A Chapot
- Institute for Ophthalmic Research, University of Tübingen, 72076, Tübingen, Germany.,Centre for Integrative Neuroscience, University of Tübingen, 72076, Tübingen, Germany.,Graduate Training Centre of Neuroscience, University of Tübingen, 72076, Tübingen, Germany
| | - Thomas Euler
- Institute for Ophthalmic Research, University of Tübingen, 72076, Tübingen, Germany.,Centre for Integrative Neuroscience, University of Tübingen, 72076, Tübingen, Germany.,Bernstein Centre for Computational Neuroscience, University of Tübingen, 72076, Tübingen, Germany
| | - Timm Schubert
- Institute for Ophthalmic Research, University of Tübingen, 72076, Tübingen, Germany.,Centre for Integrative Neuroscience, University of Tübingen, 72076, Tübingen, Germany
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23
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Rosa JM, Ruehle S, Ding H, Lagnado L. Crossover Inhibition Generates Sustained Visual Responses in the Inner Retina. Neuron 2016; 90:308-19. [PMID: 27068790 PMCID: PMC4848346 DOI: 10.1016/j.neuron.2016.03.015] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2015] [Revised: 01/21/2016] [Accepted: 03/02/2016] [Indexed: 12/23/2022]
Abstract
In daylight, the input to the retinal circuit is provided primarily by cone photoreceptors acting as band-pass filters, but the retinal output also contains neuronal populations transmitting sustained signals. Using in vivo imaging of genetically encoded calcium reporters, we investigated the circuits that generate these sustained channels within the inner retina of zebrafish. In OFF bipolar cells, sustained transmission was found to depend on crossover inhibition from the ON pathway through GABAergic amacrine cells. In ON bipolar cells, the amplitude of low-frequency signals was regulated by glycinergic amacrine cells, while GABAergic inhibition regulated the gain of band-pass signals. We also provide the first functional description of a subset of sustained ON bipolar cells in which synaptic activity was suppressed by fluctuations at frequencies above ∼0.2 Hz. These results map out the basic circuitry by which the inner retina generates sustained visual signals and describes a new function of crossover inhibition.
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Affiliation(s)
- Juliana M Rosa
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK
| | - Sabine Ruehle
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK
| | - Huayu Ding
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK
| | - Leon Lagnado
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK; School of Life Sciences, University of Sussex, Brighton, BN1 9QG, UK.
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24
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Graffe M, Zenisek D, Taraska JW. A marginal band of microtubules transports and organizes mitochondria in retinal bipolar synaptic terminals. ACTA ACUST UNITED AC 2016; 146:109-17. [PMID: 26123197 PMCID: PMC4485018 DOI: 10.1085/jgp.201511396] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A band of microtubules ringing the retinal bipolar cell synaptic terminal may be crucial to supply and anchor the mitochondria required to sustain transmitter release. A set of bipolar cells in the retina of goldfish contains giant synaptic terminals that can be over 10 µm in diameter. Hundreds of thousands of synaptic vesicles fill these terminals and engage in continuous rounds of exocytosis. How the cytoskeleton and other organelles in these neurons are organized to control synaptic activity is unknown. Here, we used 3-D fluorescence and 3-D electron microscopy to visualize the complex subcellular architecture of these terminals. We discovered a thick band of microtubules that emerged from the axon to loop around the terminal periphery throughout the presynaptic space. This previously unknown microtubule structure associated with a substantial population of mitochondria in the synaptic terminal. Drugs that inhibit microtubule-based kinesin motors led to accumulation of mitochondria in the axon. We conclude that this prominent microtubule band is crucial to the transport and localization of mitochondria into the presynaptic space to provide the sustained energy necessary for continuous transmitter release in these giant synaptic terminals.
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Affiliation(s)
- Malkolm Graffe
- National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892
| | - David Zenisek
- Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT 06510
| | - Justin W Taraska
- National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892
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25
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Ferrati G, Martini FJ, Maravall M. Presynaptic Adenosine Receptor-Mediated Regulation of Diverse Thalamocortical Short-Term Plasticity in the Mouse Whisker Pathway. Front Neural Circuits 2016; 10:9. [PMID: 26941610 PMCID: PMC4763074 DOI: 10.3389/fncir.2016.00009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Accepted: 02/05/2016] [Indexed: 12/27/2022] Open
Abstract
Short-term synaptic plasticity (STP) sets the sensitivity of a synapse to incoming activity and determines the temporal patterns that it best transmits. In “driver” thalamocortical (TC) synaptic populations, STP is dominated by depression during stimulation from rest. However, during ongoing stimulation, lemniscal TC connections onto layer 4 neurons in mouse barrel cortex express variable STP. Each synapse responds to input trains with a distinct pattern of depression or facilitation around its mean steady-state response. As a result, in common with other synaptic populations, lemniscal TC synapses express diverse rather than uniform dynamics, allowing for a rich representation of temporally varying stimuli. Here, we show that this STP diversity is regulated presynaptically. Presynaptic adenosine receptors of the A1R type, but not kainate receptors (KARs), modulate STP behavior. Blocking the receptors does not eliminate diversity, indicating that diversity is related to heterogeneous expression of multiple mechanisms in the pathway from presynaptic calcium influx to neurotransmitter release.
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Affiliation(s)
- Giovanni Ferrati
- Instituto de Neurociencias de Alicante UMH-CSIC Sant Joan d'Alacant, Spain
| | | | - Miguel Maravall
- Instituto de Neurociencias de Alicante UMH-CSICSant Joan d'Alacant, Spain; School of Life Sciences, Sussex Neuroscience, University of SussexBrighton, UK
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26
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Kim MH, von Gersdorff H. Postsynaptic Plasticity Triggered by Ca²⁺-Permeable AMPA Receptor Activation in Retinal Amacrine Cells. Neuron 2016; 89:507-20. [PMID: 26804991 DOI: 10.1016/j.neuron.2015.12.028] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2015] [Revised: 07/18/2015] [Accepted: 12/15/2015] [Indexed: 01/04/2023]
Abstract
Amacrine cells are thought to be a major locus for mechanisms of light adaptation and contrast enhancement in the retina. However, the potential for plasticity in their AMPA receptor currents remains largely unknown. Using paired patch-clamp recordings between bipolar cell terminals and amacrine cells, we have simultaneously measured presynaptic membrane capacitance changes and EPSCs. Repetitive bipolar cell depolarizations, designed to maintain the same amount of exocytosis, nevertheless significantly potentiated evoked EPSCs in a subpopulation of amacrine cells. Likewise, repetitive iontophoresis (or puffs) of glutamate (or AMPA) onto the dendrites of amacrine cells also significantly potentiated evoked currents and [Ca(2+)]i rises. However, strong postsynaptic Ca(2+) buffering with BAPTA abolished the potentiation and selective antagonists of Ca(2+)-permeable AMPA receptors also blocked the potentiation of AMPA-mediated currents. Together these results suggest that Ca(2+) influx via Ca(2+)-permeable AMPA receptors can elicit a rapid form of postsynaptic plasticity in a subgroup of amacrine cell dendrites.
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Affiliation(s)
- Mean-Hwan Kim
- The Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA
| | - Henrique von Gersdorff
- The Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA; Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR 97239, USA; Department of Physiology and Pharmacology, Oregon Health & Science University, Portland, OR 97239, USA.
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27
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Abstract
The first synapses transmitting visual information contain an unusual organelle, the ribbon, which is involved in the transport and priming of vesicles to be released at the active zone. The ribbon is one of many design features that allow efficient refilling of the active zone, which in turn enables graded changes in membrane potential to be transmitted using a continuous mode of neurotransmitter release. The ribbon also plays a key role in supplying vesicles for rapid and transient bursts of release that signal fast changes, such as the onset of light. We increasingly understand how the physiological properties of ribbon synapses determine basic transformations of the visual signal and, in particular, how the process of refilling the active zone regulates the gain and adaptive properties of the retinal circuit. The molecular basis of ribbon function is, however, far from clear.
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Affiliation(s)
- Leon Lagnado
- School of Life Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom;
| | - Frank Schmitz
- Department of Neuroanatomy, Institute for Anatomy and Cell Biology, Medical School Saarland University, Homburg/Saar, Germany;
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28
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Balakrishnan V, Puthussery T, Kim MH, Taylor WR, von Gersdorff H. Synaptic Vesicle Exocytosis at the Dendritic Lobules of an Inhibitory Interneuron in the Mammalian Retina. Neuron 2015; 87:563-75. [PMID: 26247863 DOI: 10.1016/j.neuron.2015.07.016] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2015] [Revised: 05/07/2015] [Accepted: 07/20/2015] [Indexed: 11/16/2022]
Abstract
Ribbon synapses convey sustained and phasic excitatory drive within retinal microcircuits. However, the properties of retinal inhibitory synapses are less well known. AII-amacrine cells are interneurons in the retina that exhibit large glycinergic synapses at their dendritic lobular appendages. Using membrane capacitance measurements, we observe robust exocytosis elicited by the opening of L-type Ca(2+) channels located on the lobular appendages. Two pools of synaptic vesicles were detected: a small, rapidly releasable pool and a larger and more slowly releasable pool. Depending on the stimulus, either paired-pulse depression or facilitation could be elicited. During early postnatal maturation, the coupling of the exocytosis Ca(2+)-sensor to Ca(2+) channel becomes tighter. Light-evoked depolarizations of the AII-amacrine cell elicited exocytosis that was graded to light intensity. Our results suggest that AII-amacrine cell synapses are capable of providing both phasic and sustained inhibitory input to their postsynaptic partners without the benefit of synaptic ribbons.
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Affiliation(s)
| | - Theresa Puthussery
- Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR 97239, USA
| | - Mean-Hwan Kim
- The Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA
| | - W Rowland Taylor
- Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR 97239, USA
| | - Henrique von Gersdorff
- The Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA; Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR 97239, USA.
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29
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Sethuramanujam S, Slaughter MM. Properties of a Glutamatergic Synapse Controlling Information Output from Retinal Bipolar Cells. PLoS One 2015; 10:e0129133. [PMID: 26053500 PMCID: PMC4459976 DOI: 10.1371/journal.pone.0129133] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2015] [Accepted: 05/04/2015] [Indexed: 11/19/2022] Open
Abstract
One general categorization of retinal ganglion cells is to segregate them into tonically or phasically responding neurons, each conveying discrete aspects of the visual scene. Although best identified in the output signals of the retina, this distinction is initiated at the first synapse: between photoreceptors and the dendrites of bipolar cells. In this study we found that the output synapses of bipolar cells also contribute to separate these pathways. Both transient and sustained ganglion cells can produce maintained spike activity, but bipolar cell glutamate release exhibits a divergence that corresponds to the response characteristics of the ganglion cells. Comparing light intensity coding in the sustained and transient ON pathways revealed that they shared the intensity spectrum. The transient pathway had greater sensitivity but smaller dynamic range, and switched from intensity coding to event detection at light levels where sustained pathway sensitivity began to rise. The distinctive properties of the sustained pathway depended upon inhibition and shifted toward those of the transient pathway in the absence of inhibition. The transient system was comparatively unaffected by the loss of inhibition and this was due to the concomitant activation of perisynaptic NMDA receptors. Overall, the properties of bipolar cell dendritic and axon terminals both contribute to the formation of key aspects of the sustained/transient dichotomy normally associated with ganglion cells.
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Affiliation(s)
- Santhosh Sethuramanujam
- Center for Neuroscience and Department of Physiology and Biophysics, University at Buffalo, Buffalo, New York, United States of America
- * E-mail:
| | - Malcolm M. Slaughter
- Center for Neuroscience and Department of Physiology and Biophysics, University at Buffalo, Buffalo, New York, United States of America
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30
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Ammer JJ, Siveke I, Felmy F. Activity-dependent transmission and integration control the timescales of auditory processing at an inhibitory synapse. Curr Biol 2015; 25:1562-72. [PMID: 26004766 DOI: 10.1016/j.cub.2015.04.026] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2015] [Revised: 03/25/2015] [Accepted: 04/14/2015] [Indexed: 12/26/2022]
Abstract
To capture the context of sensory information, neural networks must process input signals across multiple timescales. In the auditory system, a prominent change in temporal processing takes place at an inhibitory GABAergic synapse in the dorsal nucleus of the lateral lemniscus (DNLL). At this synapse, inhibition outlasts the stimulus by tens of milliseconds, such that it suppresses responses to lagging sounds, and is therefore implicated in echo suppression. Here, we untangle the cellular basis of this inhibition. We demonstrate with in vivo whole-cell patch-clamp recordings in Mongolian gerbils that the duration of inhibition increases with sound intensity. Activity-dependent spillover and asynchronous release translate the high presynaptic firing rates found in vivo into a prolonged synaptic output in acute slice recordings. A key mechanism controlling the inhibitory time course is the passive integration of the hyperpolarizing inhibitory conductance. This prolongation depends on the synaptic conductance amplitude. Computational modeling shows that this prolongation is a general mechanism and relies on a non-linear effect caused by synaptic conductance saturation when approaching the GABA reversal potential. The resulting hyperpolarization generates an efficient activity-dependent suppression of action potentials without affecting the threshold or gain of the input-output function. Taken together, the GABAergic inhibition in the DNLL is adjusted to the physiologically relevant duration by passive integration of inhibition with activity-dependent synaptic kinetics. This change in processing timescale combined with the reciprocal connectivity between the DNLLs implements a mechanism to suppress the distracting localization cues of echoes and helps to localize the initial sound source reliably.
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Affiliation(s)
- Julian J Ammer
- Division of Neurobiology, Department Biology II, Ludwig-Maximilians University Munich, Großhaderner Straße 2, 82152 Planegg-Martinsried, Germany; Graduate School of Systemic Neuroscience Munich, 82152 Planegg-Martinsried, Germany
| | - Ida Siveke
- Division of Neurobiology, Department Biology II, Ludwig-Maximilians University Munich, Großhaderner Straße 2, 82152 Planegg-Martinsried, Germany
| | - Felix Felmy
- Division of Neurobiology, Department Biology II, Ludwig-Maximilians University Munich, Großhaderner Straße 2, 82152 Planegg-Martinsried, Germany; Bioimaging Center, Department Biology I, Ludwig-Maximilians University Munich, Großhaderner Straße 2, 82152 Planegg-Martinsried, Germany.
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