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For: Stevens SLR, Kuzak M, Martinez C, Moser A, Bleeker P, Galland M. Building a local community of practice in scientific programming for life scientists. PLoS Biol 2018;16:e2005561. [PMID: 30485260 PMCID: PMC6287879 DOI: 10.1371/journal.pbio.2005561] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 12/10/2018] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Reyes RJ, Pham O, Fergusson R, Ceberio N, Clark C, Sarah Cohen C, Fuse M, Pennings P. SCIP: a self-paced, community-based summer coding program creates community and increases coding confidence, lessons learned from the pandemic. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2022.12.27.521952. [PMID: 36597523 PMCID: PMC9810221 DOI: 10.1101/2022.12.27.521952] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
2
Williams JJ, Tractenberg RE, Batut B, Becker EA, Brown AM, Burke ML, Busby B, Cooch NK, Dillman AA, Donovan SS, Doyle MA, van Gelder CWG, Hall CR, Hertweck KL, Jordan KL, Jungck JR, Latour AR, Lindvall JM, Lloret-Llinares M, McDowell GS, Morris R, Mourad T, Nisselle A, Ordóñez P, Paladin L, Palagi PM, Sukhai MA, Teal TK, Woodley L. An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond. PLoS One 2023;18:e0293879. [PMID: 37943810 PMCID: PMC10635508 DOI: 10.1371/journal.pone.0293879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 10/23/2023] [Indexed: 11/12/2023]  Open
3
Kelliher JM, Rudolph M, Vangay P, Abbas A, Borton MA, Davenport ER, Davenport KW, Erazo NG, Herman C, Karstens L, Kocurek B, Lutz HL, Myers KS, Ockert I, Rodriguez FE, Santistevan C, Saunders JK, Smith ML, Vogtmann E, Windsor A, Wood-Charlson EM, Woodley L, Eloe-Fadrosh EA. Cohort-based learning for microbiome research community standards. Nat Microbiol 2023;8:751-753. [PMID: 37069400 DOI: 10.1038/s41564-023-01361-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/19/2023]
4
Gaynor KM, Azevedo T, Boyajian C, Brun J, Budden AE, Cole A, Csik S, DeCesaro J, Do-Linh H, Dudney J, Galaz García C, Leonard S, Lyon NJ, Marks A, Parish J, Phillips AA, Scarborough C, Smith J, Thompson M, Vargas Poulsen C, Fong CR. Ten simple rules to cultivate belonging in collaborative data science research teams. PLoS Comput Biol 2022;18:e1010567. [PMID: 36327241 PMCID: PMC9632775 DOI: 10.1371/journal.pcbi.1010567] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
5
Zuckerman AL, Lo SM. Examining the Variations in Undergraduate Students' Conceptions of Successful Researchers: A Phenomenographic Study. CBE LIFE SCIENCES EDUCATION 2022;21:ar55. [PMID: 35925918 PMCID: PMC9582811 DOI: 10.1187/cbe.21-10-0295] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 06/15/2022] [Accepted: 06/27/2022] [Indexed: 06/15/2023]
6
Rosenfeld DL, Balcetis E, Bastian B, Berkman ET, Bosson JK, Brannon TN, Burrow AL, Cameron CD, Chen S, Cook JE, Crandall C, Davidai S, Dhont K, Eastwick PW, Gaither SE, Gangestad SW, Gilovich T, Gray K, Haines EL, Haselton MG, Haslam N, Hodson G, Hogg MA, Hornsey MJ, Huo YJ, Joel S, Kachanoff FJ, Kraft-Todd G, Leary MR, Ledgerwood A, Lee RT, Loughnan S, MacInnis CC, Mann T, Murray DR, Parkinson C, Pérez EO, Pyszczynski T, Ratner K, Rothgerber H, Rounds JD, Schaller M, Silver RC, Spellman BA, Strohminger N, Swim JK, Thoemmes F, Urganci B, Vandello JA, Volz S, Zayas V, Tomiyama AJ. Psychological Science in the Wake of COVID-19: Social, Methodological, and Metascientific Considerations. PERSPECTIVES ON PSYCHOLOGICAL SCIENCE 2022;17:311-333. [PMID: 34597198 PMCID: PMC8901450 DOI: 10.1177/1745691621999374] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
7
Holmgren SD, Boyles RR, Cronk RD, Duncan CG, Kwok RK, Lunn RM, Osborn KC, Thessen AE, Schmitt CP. Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021;18:8985. [PMID: 34501574 PMCID: PMC8430534 DOI: 10.3390/ijerph18178985] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/13/2021] [Accepted: 08/19/2021] [Indexed: 01/10/2023]
8
Hall CR, Griffin PC, Lonie AJ, Christiansen JH. Application of a bioinformatics training delivery method for reaching dispersed and distant trainees. PLoS Comput Biol 2021;17:e1008715. [PMID: 33735276 PMCID: PMC7971692 DOI: 10.1371/journal.pcbi.1008715] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
9
Reiter T, Brooks† PT, Irber† L, Joslin† SEK, Reid† CM, Scott† C, Brown CT, Pierce-Ward NT. Streamlining data-intensive biology with workflow systems. Gigascience 2021;10:giaa140. [PMID: 33438730 PMCID: PMC8631065 DOI: 10.1093/gigascience/giaa140] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 11/06/2020] [Accepted: 11/13/2020] [Indexed: 11/14/2022]  Open
10
Jiménez-García B, Teixeira JMC, Trellet M, Rodrigues JPGLM, Bonvin AMJJ. PDB-tools web: A user-friendly interface for the manipulation of PDB files. Proteins 2020;89:330-335. [PMID: 33111403 PMCID: PMC7855443 DOI: 10.1002/prot.26018] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 10/20/2020] [Accepted: 10/26/2020] [Indexed: 01/06/2023]
11
Beck MW, O’Hara C, Stewart Lowndes JS, D. Mazor R, Theroux S, J. Gillett D, Lane B, Gearheart G. The importance of open science for biological assessment of aquatic environments. PeerJ 2020;8:e9539. [PMID: 32742805 PMCID: PMC7377246 DOI: 10.7717/peerj.9539] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 06/23/2020] [Indexed: 11/22/2022]  Open
12
DeMasi O, Paxton A, Koy K. Ad hoc efforts for advancing data science education. PLoS Comput Biol 2020;16:e1007695. [PMID: 32379822 PMCID: PMC7205211 DOI: 10.1371/journal.pcbi.1007695] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Wibberg D, Batut B, Belmann P, Blom J, Glöckner FO, Grüning B, Hoffmann N, Kleinbölting N, Rahn R, Rey M, Scholz U, Sharan M, Tauch A, Trojahn U, Usadel B, Kohlbacher O. The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Res 2019;8. [PMID: 33163154 PMCID: PMC7607484 DOI: 10.12688/f1000research.20244.2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/04/2020] [Indexed: 12/25/2022]  Open
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