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For: Micali G, Aquino G, Richards DM, Endres RG. Accurate encoding and decoding by single cells: amplitude versus frequency modulation. PLoS Comput Biol 2015;11:e1004222. [PMID: 26030820 PMCID: PMC4452646 DOI: 10.1371/journal.pcbi.1004222] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Accepted: 03/03/2015] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Ponce Dawson S. Biological physics to uncover cell signaling. Biophys Rev 2025;17:271-283. [PMID: 40376425 PMCID: PMC12075082 DOI: 10.1007/s12551-025-01308-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Accepted: 03/21/2025] [Indexed: 05/18/2025]  Open
2
Givré A, Colman-Lerner A, Ponce Dawson S. Amplitude and frequency encoding result in qualitatively distinct informational landscapes in cell signaling. Sci Rep 2025;15:8075. [PMID: 40057610 PMCID: PMC11890874 DOI: 10.1038/s41598-025-92424-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 02/27/2025] [Indexed: 05/13/2025]  Open
3
Lyons AC, Mehta S, Zhang J. Fluorescent biosensors illuminate the spatial regulation of cell signaling across scales. Biochem J 2023;480:1693-1717. [PMID: 37903110 PMCID: PMC10657186 DOI: 10.1042/bcj20220223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 10/11/2023] [Accepted: 10/13/2023] [Indexed: 11/01/2023]
4
Ho KKY, Srivastava S, Kinnunen PC, Garikipati K, Luker GD, Luker KE. Oscillatory ERK Signaling and Morphology Determine Heterogeneity of Breast Cancer Cell Chemotaxis via MEK-ERK and p38-MAPK Signaling Pathways. Bioengineering (Basel) 2023;10:bioengineering10020269. [PMID: 36829763 PMCID: PMC9952091 DOI: 10.3390/bioengineering10020269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 01/24/2023] [Accepted: 02/12/2023] [Indexed: 02/22/2023]  Open
5
Pizzoni A, Zhang X, Naim N, Altschuler DL. Soluble cyclase-mediated nuclear cAMP synthesis is sufficient for cell proliferation. Proc Natl Acad Sci U S A 2023;120:e2208749120. [PMID: 36656863 PMCID: PMC9942871 DOI: 10.1073/pnas.2208749120] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 12/09/2022] [Indexed: 01/20/2023]  Open
6
A closed-loop multi-scale model for intrinsic frequency-dependent regulation of axonal growth. Math Biosci 2021;344:108768. [PMID: 34952037 DOI: 10.1016/j.mbs.2021.108768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 12/10/2021] [Accepted: 12/15/2021] [Indexed: 11/22/2022]
7
Guo L, Zhu K, Pargett M, Contreras A, Tsai P, Qing Q, Losert W, Albeck J, Zhao M. Electrically synchronizing and modulating the dynamics of ERK activation to regulate cell fate. iScience 2021;24:103240. [PMID: 34746704 PMCID: PMC8554532 DOI: 10.1016/j.isci.2021.103240] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 09/18/2021] [Accepted: 10/05/2021] [Indexed: 11/18/2022]  Open
8
Maity A, Wollman R. Information transmission from NFkB signaling dynamics to gene expression. PLoS Comput Biol 2020;16:e1008011. [PMID: 32797040 PMCID: PMC7478807 DOI: 10.1371/journal.pcbi.1008011] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 09/08/2020] [Accepted: 06/02/2020] [Indexed: 02/06/2023]  Open
9
Wang H, Liu P, Li Q, Zhou T. Entangled signal pathways can both control expression stability and induce stochastic focusing. FEBS Lett 2018;592:1135-1149. [DOI: 10.1002/1873-3468.13012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Revised: 01/28/2018] [Accepted: 02/08/2018] [Indexed: 11/08/2022]
10
Network Motifs Capable of Decoding Transcription Factor Dynamics. Sci Rep 2018;8:3594. [PMID: 29483553 PMCID: PMC5827039 DOI: 10.1038/s41598-018-21945-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Accepted: 02/13/2018] [Indexed: 11/08/2022]  Open
11
Mestre ALG, Inácio PMC, Elamine Y, Asgarifar S, Lourenço AS, Cristiano MLS, Aguiar P, Medeiros MCR, Araújo IM, Ventura J, Gomes HL. Extracellular Electrophysiological Measurements of Cooperative Signals in Astrocytes Populations. Front Neural Circuits 2017;11:80. [PMID: 29109679 PMCID: PMC5660104 DOI: 10.3389/fncir.2017.00080] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Accepted: 10/06/2017] [Indexed: 01/28/2023]  Open
12
Dessauges C, Pertz O. Developmental ERK Signaling Goes Digital. Dev Cell 2017;42:443-444. [PMID: 28898676 DOI: 10.1016/j.devcel.2017.08.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
13
Phillips NE, Manning C, Papalopulu N, Rattray M. Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes. PLoS Comput Biol 2017;13:e1005479. [PMID: 28493880 PMCID: PMC5444866 DOI: 10.1371/journal.pcbi.1005479] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2016] [Revised: 05/25/2017] [Accepted: 03/24/2017] [Indexed: 12/05/2022]  Open
14
Liu P, Wang H, Huang L, Zhou T. The dynamic mechanism of noisy signal decoding in gene regulation. Sci Rep 2017;7:42128. [PMID: 28176840 PMCID: PMC5296728 DOI: 10.1038/srep42128] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Accepted: 01/06/2017] [Indexed: 11/08/2022]  Open
15
Mackay L, Mikolajewicz N, Komarova SV, Khadra A. Systematic Characterization of Dynamic Parameters of Intracellular Calcium Signals. Front Physiol 2016;7:525. [PMID: 27891096 PMCID: PMC5102910 DOI: 10.3389/fphys.2016.00525] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Accepted: 10/24/2016] [Indexed: 12/14/2022]  Open
16
Zhang C, Tsoi R, Wu F, You L. Processing Oscillatory Signals by Incoherent Feedforward Loops. PLoS Comput Biol 2016;12:e1005101. [PMID: 27623175 PMCID: PMC5021367 DOI: 10.1371/journal.pcbi.1005101] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 08/04/2016] [Indexed: 11/19/2022]  Open
17
Wang H, Yuan Z, Liu P, Zhou T. Mechanisms of information decoding in a cascade system of gene expression. Phys Rev E 2016;93:052411. [PMID: 27300928 DOI: 10.1103/physreve.93.052411] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Indexed: 06/06/2023]
18
Aquino G, Wingreen NS, Endres RG. Know the Single-Receptor Sensing Limit? Think Again. JOURNAL OF STATISTICAL PHYSICS 2015;162:1353-1364. [PMID: 26941467 PMCID: PMC4761375 DOI: 10.1007/s10955-015-1412-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2015] [Accepted: 10/29/2015] [Indexed: 05/28/2023]
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