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For: Liu X, Huang M, Fan B, Buckler ES, Zhang Z. Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies. PLoS Genet 2016;12:e1005767. [PMID: 26828793 PMCID: PMC4734661 DOI: 10.1371/journal.pgen.1005767] [Citation(s) in RCA: 825] [Impact Index Per Article: 91.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2015] [Accepted: 12/03/2015] [Indexed: 12/05/2022]  Open
Number Cited by Other Article(s)
1
Safhi FA, Alqudah AM, Börner A, Thabet SG. Inheritance of resilience: genetic Mapping of transgenerational and intergenerational drought stress memory in wheat. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2025;357:112542. [PMID: 40350085 DOI: 10.1016/j.plantsci.2025.112542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2025] [Revised: 04/30/2025] [Accepted: 05/02/2025] [Indexed: 05/14/2025]
2
Bernard A, Bénéjam J, Roth M, Lheureux F, Dirlewanger E. Genomic prediction in Persian walnut: Optimization levers according to genetic architecture of complex traits. THE PLANT GENOME 2025;18:e70047. [PMID: 40369746 PMCID: PMC12078886 DOI: 10.1002/tpg2.70047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Revised: 04/04/2025] [Accepted: 04/11/2025] [Indexed: 05/16/2025]
3
Karakas E, Bulut M, Fernie A. Metabolome guided treasure hunt - learning from metabolic diversity. JOURNAL OF PLANT PHYSIOLOGY 2025;309:154494. [PMID: 40288107 DOI: 10.1016/j.jplph.2025.154494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Revised: 04/10/2025] [Accepted: 04/13/2025] [Indexed: 04/29/2025]
4
Ghosh S, Bollinedi H, Krishnan SG, Bhowmick PK, Nagarajan M, Vinod KK, Ellur RK, Singh AK. Dissection of the Genetic Basis for Total γ-Oryzanol and Its Components in Whole Grain Brown Rice through Genome-Wide Association Study. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2025;73:12765-12775. [PMID: 40368639 DOI: 10.1021/acs.jafc.5c01334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2025]
5
Clauw P, Ellis TJ, Liu HJ, Sasaki E. Beyond the Standard GWAS-A Guide for Plant Biologists. PLANT & CELL PHYSIOLOGY 2025;66:431-443. [PMID: 38988201 PMCID: PMC12085090 DOI: 10.1093/pcp/pcae079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Revised: 07/05/2024] [Accepted: 07/10/2024] [Indexed: 07/12/2024]
6
Ke J, Chen C, Fei J, Luo K, Cheng Y, Yu H, Cheng C, Yan Y, Zhang X, Liang S, Sun H, Bai C, Sun B. Genome-wide analysis of genetic loci and candidate genes related to teat number traits in Dongliao black pigs. Front Genet 2025;16:1593395. [PMID: 40438329 PMCID: PMC12116542 DOI: 10.3389/fgene.2025.1593395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2025] [Accepted: 04/29/2025] [Indexed: 06/01/2025]  Open
7
Cha JK, Park H, Jang SG, Choi C, Kwon Y, Lee SM, Kim Y, Jin BJ, Lee JH, Kwon SW, Kim WJ. Identification and validation of a major quantitative trait locus for precise control of heading date in wheat (Triticum aestivum L.). BMC PLANT BIOLOGY 2025;25:616. [PMID: 40348961 PMCID: PMC12065283 DOI: 10.1186/s12870-025-06646-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2025] [Accepted: 04/29/2025] [Indexed: 05/14/2025]
8
Bielski W, Surma A, Belter J, Kozak B, Książkiewicz M, Rychel-Bielska S. Molecular dissection of the genetic architecture of phenology underlying Lupinus hispanicus early flowering and adaptation to winter- or spring sowing. Sci Rep 2025;15:15324. [PMID: 40312418 PMCID: PMC12046050 DOI: 10.1038/s41598-025-00096-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Accepted: 04/24/2025] [Indexed: 05/03/2025]  Open
9
Chaudhary S, Zakieh M, Dubey M, Jensen DF, Grenville-Briggs L, Chawade A, Karlsson M. Plant genotype-specific modulation of Clonostachys rosea-mediated biocontrol of septoria tritici blotch disease in wheat. BMC PLANT BIOLOGY 2025;25:576. [PMID: 40316900 PMCID: PMC12049020 DOI: 10.1186/s12870-025-06620-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 04/24/2025] [Indexed: 05/04/2025]
10
Chen C, Ruang‐areerate P, Travis A, Douglas A, Salt D, Pinson S, Eizenga G, Price A, Norton G. Multi-Experiment and Multi-Locus Genome-Wide Association Mapping for Grain Arsenic in Rice Population. PLANT DIRECT 2025;9:e70064. [PMID: 40330706 PMCID: PMC12050220 DOI: 10.1002/pld3.70064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 03/10/2025] [Accepted: 03/20/2025] [Indexed: 05/08/2025]
11
Zhang Z, Wang X, Zhang Y, Zhou K, Yu G, Yang W, Li F, Guan X, Zhang X, Yang Z, Xu C, Xu Y. SPDC-HG: An accelerator of genomic hybrid breeding in maize. PLANT BIOTECHNOLOGY JOURNAL 2025;23:1847-1861. [PMID: 40014659 PMCID: PMC12018846 DOI: 10.1111/pbi.70011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Revised: 01/22/2025] [Accepted: 02/04/2025] [Indexed: 03/01/2025]
12
Cordoba-Novoa H, Zhang B, Guo Y, Aslam MM, Fritschi FB, Hoyos-Villegas V. Whole plant transpiration responses of common bean (Phaseolus vulgaris L.) to drying soil: Water channels and transcription factors. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025;222:109759. [PMID: 40068460 DOI: 10.1016/j.plaphy.2025.109759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2024] [Revised: 03/03/2025] [Accepted: 03/05/2025] [Indexed: 05/07/2025]
13
Mathivanan RK, Pedersen C, Turkus J, Shrestha N, Ali W, Torres-Rodriguez JV, Mural RV, Obata T, Schnable JC. Transcripts and genomic intervals associated with variation in metabolite abundance in maize leaves under field conditions. BMC Genomics 2025;26:434. [PMID: 40312298 PMCID: PMC12046723 DOI: 10.1186/s12864-025-11580-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Accepted: 04/08/2025] [Indexed: 05/03/2025]  Open
14
Kim TH, Lee KH, Chung MN, Lee HU, Nam SS, Park W. Identification of single nucleotide polymorphisms and candidate genes associated with fiber content in sweetpotato (Ipomoea batatas (L.) Lam.) through a genome-wide association study. BMC PLANT BIOLOGY 2025;25:569. [PMID: 40307682 PMCID: PMC12044718 DOI: 10.1186/s12870-025-06614-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2025] [Accepted: 04/24/2025] [Indexed: 05/02/2025]
15
Derbyshire MC, Newman TE, Khentry Y, Michael PJ, Bennett SJ, Rijal Lamichhane A, Graham-Taylor C, Chander S, Camplone C, Vicini S, Esquivel-Garcia L, Coutu C, Hegedus D, Clarkson J, Lindbeck K, Kamphuis LG. Recombination and transposition drive genomic structural variation potentially impacting life history traits in a host-generalist fungal plant pathogen. BMC Biol 2025;23:110. [PMID: 40289080 PMCID: PMC12036203 DOI: 10.1186/s12915-025-02179-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Accepted: 02/28/2025] [Indexed: 04/29/2025]  Open
16
Zuo Z, Li M, Liu D, Li Q, Huang B, Ye G, Wang J, Tang Y, Zhang Z. GWAS Procedures for Gene Mapping in Diverse Populations With Complex Structures. Bio Protoc 2025;15:e5284. [PMID: 40291431 PMCID: PMC12021685 DOI: 10.21769/bioprotoc.5284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Revised: 03/19/2025] [Accepted: 03/20/2025] [Indexed: 04/30/2025]  Open
17
Ujinwal M, Singh N, Langyan S, Singh NK. Genetic dissection of total protein content, phenolic content and seed quality traits in pigeonpea (Cajanus cajan) using 62K pigeonpea genic SNP chip. Mol Genet Genomics 2025;300:44. [PMID: 40244494 DOI: 10.1007/s00438-025-02235-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 02/10/2025] [Indexed: 04/18/2025]
18
Akinmade H, Ferreira RCU, Murad Leite Andrade MH, Fernandes C, Sipowicz P, Muñoz-Amatriaín M, Rios E. Genome-wide association studies dissect the genetic architecture of seed and yield component traits in cowpea (Vigna unguiculata L. Walp). G3 (BETHESDA, MD.) 2025;15:jkaf024. [PMID: 39920462 PMCID: PMC12005157 DOI: 10.1093/g3journal/jkaf024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 09/18/2024] [Accepted: 01/17/2025] [Indexed: 02/09/2025]
19
Patel J, Patel S, Cook L, Fallen BD, Koebernick J. Soybean genome‑wide association study of seed weight, protein, and oil content in the southeastern USA. Mol Genet Genomics 2025;300:43. [PMID: 40220041 PMCID: PMC11993454 DOI: 10.1007/s00438-025-02228-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 01/22/2025] [Indexed: 04/14/2025]
20
Singh A, Newton L, Schnable JC, Thompson AM. Unveiling shared genetic regulators of plant architectural and biomass yield traits in the Sorghum Association Panel. JOURNAL OF EXPERIMENTAL BOTANY 2025;76:1625-1643. [PMID: 39798149 PMCID: PMC11981901 DOI: 10.1093/jxb/eraf012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Accepted: 01/09/2025] [Indexed: 01/15/2025]
21
Rehman AU, Davik J, Karisto P, Kaseva J, Karhu S, Rantanen M, Strandén I, Hytönen T, Schulman AH, Haikonen T. A major QTL region associated with powdery mildew resistance in leaves and fruits of the reconstructed garden strawberry. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2025;138:93. [PMID: 40195180 PMCID: PMC11976356 DOI: 10.1007/s00122-025-04871-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Accepted: 03/05/2025] [Indexed: 04/09/2025]
22
Gong W, Vinarao R, Proud C, Wood S, Snell P, Fukai S, Mitchell J. Genomic Regions and Molecular Markers Associated with Deeper Rooting to Improve Grain Yield in Aerobic Rice (Oryza sativa L.) Production Systems. RICE (NEW YORK, N.Y.) 2025;18:24. [PMID: 40195251 PMCID: PMC11977055 DOI: 10.1186/s12284-025-00784-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Accepted: 03/26/2025] [Indexed: 04/09/2025]
23
Szabo-Hever A, Running KLD, Seneviratne S, Singh G, Zhang Z, Peters Haugrud AR, Maccaferri M, Tuberosa R, Friesen TL, Xu SS, Faris JD. Evaluation of Durum and Hard Red Spring Wheat Panels for Sensitivity to Necrotrophic Effectors Produced by Parastagonospora nodorum. PLANT DISEASE 2025;109:851-861. [PMID: 39475585 DOI: 10.1094/pdis-05-24-0990-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
24
Mohanty JK, Yadav A, Narnoliya L, Thakro V, Nayyar H, Dixit GP, Jha UC, Vara Prasad PV, Agarwal P, Parida SK. A Next-Generation Combinatorial Genomic Strategy Scans Genomic Loci Governing Heat Stress Tolerance in Chickpea. PLANT, CELL & ENVIRONMENT 2025;48:2706-2726. [PMID: 39360859 DOI: 10.1111/pce.15186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 09/03/2024] [Accepted: 09/17/2024] [Indexed: 10/05/2024]
25
Kumar K, Durgesh K, Anjoy P, Srivastava H, Tribhuvan KU, Sevanthi AM, Singh A, Prabha R, Sharma S, Joshi R, Jain PK, Singh NK, Gaikwad K. Transcriptional Reprogramming and Allelic Variation in Pleiotropic QTL Regulates Days to Flowering and Growth Habit in Pigeonpea. PLANT, CELL & ENVIRONMENT 2025;48:2783-2803. [PMID: 39704095 DOI: 10.1111/pce.15322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Revised: 10/16/2024] [Accepted: 11/26/2024] [Indexed: 12/21/2024]
26
Suresh LM, Gowda M, Beyene Y, Makumbi D, Manigben KA, Burgueño J, Okayo R, Woyengo VW, Prasanna BM. Identification of gray leaf spot-resistant donor lines in tropical maize germplasm and their agronomic performance under artificial inoculation. FRONTIERS IN PLANT SCIENCE 2025;16:1536981. [PMID: 40235920 PMCID: PMC11997715 DOI: 10.3389/fpls.2025.1536981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Accepted: 03/07/2025] [Indexed: 04/17/2025]
27
Chun J, Hwang S. Genome-wide association and selection studies for pod dehiscence resistance in the USDA soybean germplasm collection. PLoS One 2025;20:e0318815. [PMID: 40153708 PMCID: PMC11952757 DOI: 10.1371/journal.pone.0318815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Accepted: 01/21/2025] [Indexed: 03/30/2025]  Open
28
Badr A, El-Shazly HH, Mahdy M, Schierenbeck M, Helmi RY, Börner A, Youssef HM. GWAS identifies novel loci linked to seedling growth traits in highly diverse barley population under drought stress. Sci Rep 2025;15:10085. [PMID: 40128265 PMCID: PMC11933270 DOI: 10.1038/s41598-025-94175-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Accepted: 03/12/2025] [Indexed: 03/26/2025]  Open
29
Quan Y, Liu H, Li K, Xu L, Zhao Z, Xiao L, Yao Y, Du D. Genome-wide association study reveals genetic loci for seed density per silique in rapeseed (Brassica napus L.). TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2025;138:80. [PMID: 40113624 DOI: 10.1007/s00122-025-04857-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Accepted: 02/15/2025] [Indexed: 03/22/2025]
30
Gallardo-Blanco HL, Garza-Rodríguez MDL, Pérez-Ibave DC, Burciaga-Flores CH, Salinas-Torres VM, González-Escamilla M, Piñeiro-Retif R, Cerda-Flores RM, Vidal-Gutiérrez O, Sanchez-Dominguez CN. Genetic Insights into Breast Cancer in Northeastern Mexico: Unveiling Gene-Environment Interactions and Their Links to Obesity and Metabolic Diseases. Cancers (Basel) 2025;17:982. [PMID: 40149317 PMCID: PMC11940701 DOI: 10.3390/cancers17060982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 03/02/2025] [Accepted: 03/05/2025] [Indexed: 03/29/2025]  Open
31
Trubanová N, Isobe S, Shirasawa K, Watanabe A, Kelesidis G, Melzer R, Schilling S. Genome-specific association study (GSAS) for exploration of variability in hemp (Cannabis sativa). Sci Rep 2025;15:8371. [PMID: 40069221 PMCID: PMC11897341 DOI: 10.1038/s41598-025-92168-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Accepted: 02/24/2025] [Indexed: 03/15/2025]  Open
32
Sharma R, Wang M, Chen X, Lakkakula IP, Amand PS, Bernardo A, Bai G, Bowden RL, Carver BF, Boehm JD, Aoun M. Genome-wide association mapping for the identification of stripe rust resistance loci in US hard winter wheat. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2025;138:67. [PMID: 40063245 PMCID: PMC11893644 DOI: 10.1007/s00122-025-04858-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Accepted: 02/15/2025] [Indexed: 03/14/2025]
33
Xu Y, Yang W, Qiu J, Zhou K, Yu G, Zhang Y, Wang X, Jiao Y, Wang X, Hu S, Zhang X, Li P, Lu Y, Chen R, Tao T, Yang Z, Xu Y, Xu C. Metabolic marker-assisted genomic prediction improves hybrid breeding. PLANT COMMUNICATIONS 2025;6:101199. [PMID: 39614617 PMCID: PMC11956108 DOI: 10.1016/j.xplc.2024.101199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 10/31/2024] [Accepted: 11/26/2024] [Indexed: 12/01/2024]
34
Uhdre R, Coyne CJ, Bourland B, Piaskowski J, Zheng P, Ganjyal GM, Zhang Z, McGee RJ, Main D, Bandillo N, Morales M, Ma Y, Chen C, Franck W, Thrash A, Warburton ML. Association study of crude seed protein and fat concentration in a USDA pea diversity panel. THE PLANT GENOME 2025;18:e20485. [PMID: 39086082 PMCID: PMC11726435 DOI: 10.1002/tpg2.20485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 05/17/2024] [Accepted: 05/22/2024] [Indexed: 08/02/2024]
35
Zhu J, Liu Q, Diao S, Zhou Z, Wang Y, Ding X, Cao M, Luo D. Development of a 101.6K liquid-phased probe for GWAS and genomic selection in pine wilt disease-resistance breeding in Masson pine. THE PLANT GENOME 2025;18:e70005. [PMID: 40025411 PMCID: PMC11873169 DOI: 10.1002/tpg2.70005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Revised: 01/20/2025] [Accepted: 01/23/2025] [Indexed: 03/04/2025]
36
Pelikan A, Goldman IL. Variation for QTL alleles associated with total dissolved solids among crop types in a GWAS of a Beta vulgaris diversity panel. THE PLANT GENOME 2025;18:e70014. [PMID: 40071467 PMCID: PMC11897936 DOI: 10.1002/tpg2.70014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 01/02/2025] [Accepted: 02/10/2025] [Indexed: 03/15/2025]
37
Lhamo D, Li G, Song G, Li X, Sen TZ, Gu Y, Xu X, Xu SS. Genome-wide association studies on resistance to powdery mildew in cultivated emmer wheat. THE PLANT GENOME 2025;18:e20493. [PMID: 39073025 PMCID: PMC11733656 DOI: 10.1002/tpg2.20493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 05/01/2024] [Accepted: 06/30/2024] [Indexed: 07/30/2024]
38
Lakkakula IP, Kolmer JA, Sharma R, St Amand P, Bernardo A, Bai G, Ibrahim A, Bowden RL, Carver BF, Boehm JD, Aoun M. Identification of leaf rust resistance loci in hard winter wheat using genome-wide association mapping. THE PLANT GENOME 2025;18:e20546. [PMID: 39757138 DOI: 10.1002/tpg2.20546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 11/25/2024] [Accepted: 11/27/2024] [Indexed: 01/07/2025]
39
Johnson S, Hyten D. Genomic Markers Associated With Soybean Resistance to the Stem Borer, Dectes texanus (Coleoptera: Cerambycidae). PLANT DIRECT 2025;9:e70040. [PMID: 40084036 PMCID: PMC11903490 DOI: 10.1002/pld3.70040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Revised: 12/18/2024] [Accepted: 12/30/2024] [Indexed: 03/16/2025]
40
Gill HS, Conley E, Brault C, Dykes L, Wiersma JC, Frels K, Anderson JA. Association mapping and genomic prediction for processing and end-use quality traits in wheat (Triticum aestivum L.). THE PLANT GENOME 2025;18:e20529. [PMID: 39539031 PMCID: PMC11726427 DOI: 10.1002/tpg2.20529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Revised: 10/20/2024] [Accepted: 10/21/2024] [Indexed: 11/16/2024]
41
Kordi M, Farrokhi N, Ahmadikhah A, Ingvarsson PK, Saidi A, Jahanfar M. Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2025;352:112382. [PMID: 39798670 DOI: 10.1016/j.plantsci.2024.112382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 12/13/2024] [Accepted: 12/30/2024] [Indexed: 01/15/2025]
42
Malani S, Ravelombola W, Manley A, Pham H, Brown M, Rahman MM. Genome-Wide Association Study for Nodule Traits in Guar. Curr Issues Mol Biol 2025;47:151. [PMID: 40136405 PMCID: PMC11941719 DOI: 10.3390/cimb47030151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 02/14/2025] [Accepted: 02/18/2025] [Indexed: 03/27/2025]  Open
43
Jiang J, Ren J, Zeng Y, Xu X, Lin S, Fan Z, Meng Y, Ma Y, Li X, Wu P. Integration of GWAS models and GS reveals the genetic architecture of ear shank in maize. Gene 2025;938:149140. [PMID: 39645098 DOI: 10.1016/j.gene.2024.149140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 11/26/2024] [Accepted: 12/03/2024] [Indexed: 12/09/2024]
44
Bernard A, Dirlewanger E, Delmas M, Racofier D, Greil ML, Lainé AL, Porte C, Gennetay D, Keller M, Chemineau P. Genome-wide association study dissects the genetic architecture of progesterone content in Persian walnut leaves (Juglans regia L.). BMC Genomics 2025;26:145. [PMID: 39955526 PMCID: PMC11829387 DOI: 10.1186/s12864-025-11341-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Accepted: 02/10/2025] [Indexed: 02/17/2025]  Open
45
Scharwies JD, Clarke T, Zheng Z, Dinneny A, Birkeland S, Veltman MA, Sturrock CJ, Banda J, Torres-Martínez HH, Viana WG, Khare R, Kieber J, Pandey BK, Bennett M, Schnable PS, Dinneny JR. Moisture-responsive root-branching pathways identified in diverse maize breeding germplasm. Science 2025;387:666-673. [PMID: 39913586 PMCID: PMC11956805 DOI: 10.1126/science.ads5999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Accepted: 01/06/2025] [Indexed: 04/02/2025]
46
Eltaher S, Li J, Freeman B, Singh S, Ali GS. A genome-wide association study identified SNP markers and candidate genes associated with morphometric fruit quality traits in mangoes. BMC Genomics 2025;26:120. [PMID: 39920570 PMCID: PMC11806778 DOI: 10.1186/s12864-025-11278-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Accepted: 01/22/2025] [Indexed: 02/09/2025]  Open
47
Ouaja M, Ghimire B, Bahri BA, Maher M, Ferjaoui S, Udupa S, Hamza S. Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection. PLoS One 2025;20:e0310390. [PMID: 39913360 PMCID: PMC11801541 DOI: 10.1371/journal.pone.0310390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Accepted: 08/30/2024] [Indexed: 02/09/2025]  Open
48
Li W, Zheng H, Cao D, Duan A, Huang L, Feng C, Yang C. GRM1 as a Candidate Gene for Buffalo Fertility: Insights from Genome-Wide Association Studies and Its Role in the FOXO Signaling Pathway. Genes (Basel) 2025;16:193. [PMID: 40004523 PMCID: PMC11855863 DOI: 10.3390/genes16020193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 01/25/2025] [Accepted: 01/30/2025] [Indexed: 02/27/2025]  Open
49
Amadu MK, Beyene Y, Chaikam V, Tongoona PB, Danquah EY, Ifie BE, Burgueno J, Prasanna BM, Gowda M. Genome-wide association mapping and genomic prediction analyses reveal the genetic architecture of grain yield and agronomic traits under drought and optimum conditions in maize. BMC PLANT BIOLOGY 2025;25:135. [PMID: 39893411 PMCID: PMC11786572 DOI: 10.1186/s12870-025-06135-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 01/21/2025] [Indexed: 02/04/2025]
50
Kim JY, Kim EH, Kang HC, Myung CH, Lim HT. Comparative genome-wide association study of single- and multi-locus models with ontology analysis for enhancing Hanwoo cow reproductive traits. Anim Genet 2025;56:e13493. [PMID: 39600059 DOI: 10.1111/age.13493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Revised: 10/07/2024] [Accepted: 11/11/2024] [Indexed: 11/29/2024]
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