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For: Sayyed-Ahmad A, Kaznessis YN. Determining the orientation of protegrin-1 in DLPC bilayers using an implicit solvent-membrane model. PLoS One 2009;4:e4799. [PMID: 19277199 DOI: 10.1371/journal.pone.0004799] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2008] [Accepted: 01/12/2009] [Indexed: 11/22/2022]  Open
Number Cited by Other Article(s)
1
Alpízar-Pedraza D, Romero-Rivero A, Perdomo-Morales R, Mantilla-García N, Pérez-Martínez C, Garay-Pérez H, Rosenau F, Ständker L, Montero-Alejo V. Improving the antimicrobial potential of the peptide CIDEM-501 through acylation: A computational approach. BIOCHIMICA ET BIOPHYSICA ACTA. BIOMEMBRANES 2025;1867:184407. [PMID: 39788472 DOI: 10.1016/j.bbamem.2025.184407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 12/05/2024] [Accepted: 01/02/2025] [Indexed: 01/12/2025]
2
Hosseini Goki N, Saberi MR, Amin M, Fazly Bazzaz BS, Khameneh B. Novel antimicrobial peptides based on Protegrin-1: In silico and in vitro assessments. Microb Pathog 2024;196:106931. [PMID: 39288825 DOI: 10.1016/j.micpath.2024.106931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 08/13/2024] [Accepted: 09/10/2024] [Indexed: 09/19/2024]
3
A Review on Bioactive Porcine Peptide, Protegrin-1. Int J Pept Res Ther 2019. [DOI: 10.1007/s10989-019-09955-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
4
Genomewide Analysis of the Antimicrobial Peptides in Python bivittatus and Characterization of Cathelicidins with Potent Antimicrobial Activity and Low Cytotoxicity. Antimicrob Agents Chemother 2017. [PMID: 28630199 DOI: 10.1128/aac.00530-17] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
5
Borkar MR, Pissurlenkar RRS, Coutinho EC. Mapping activity elements of protegrin antimicrobial peptides by HomoSAR. RSC Adv 2015. [DOI: 10.1039/c5ra14402g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
6
Dubovskii PV, Utkin YN. Cobra cytotoxins: structural organization and antibacterial activity. Acta Naturae 2014;6:11-8. [PMID: 25349711 PMCID: PMC4207557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]  Open
7
Lazaridis T, He Y, Prieto L. Membrane interactions and pore formation by the antimicrobial peptide protegrin. Biophys J 2013;104:633-42. [PMID: 23442914 DOI: 10.1016/j.bpj.2012.12.038] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2012] [Revised: 12/06/2012] [Accepted: 12/21/2012] [Indexed: 11/18/2022]  Open
8
Bolintineanu DS, Vivcharuk V, Kaznessis YN. Multiscale models of the antimicrobial peptide protegrin-1 on gram-negative bacteria membranes. Int J Mol Sci 2012;13:11000-11011. [PMID: 23109834 PMCID: PMC3472726 DOI: 10.3390/ijms130911000] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2012] [Revised: 08/15/2012] [Accepted: 08/22/2012] [Indexed: 12/22/2022]  Open
9
Poisson–Boltzmann Implicit Solvation Models. ACTA ACUST UNITED AC 2012. [DOI: 10.1016/b978-0-444-59440-2.00006-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
10
Vivcharuk V, Kaznessis YN. Thermodynamic analysis of protegrin-1 insertion and permeation through a lipid bilayer. J Phys Chem B 2011;115:14704-12. [PMID: 22044268 PMCID: PMC3461958 DOI: 10.1021/jp205153y] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
Ikeda K, Kameda T, Harada E, Akutsu H, Fujiwara T. Combined Use of Replica-Exchange Molecular Dynamics and Magic-Angle-Spinning Solid-State NMR Spectral Simulations for Determining the Structure and Orientation of Membrane-Bound Peptide. J Phys Chem B 2011;115:9327-36. [DOI: 10.1021/jp205290t] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
12
Bolintineanu DS, Kaznessis YN. Computational studies of protegrin antimicrobial peptides: a review. Peptides 2011;32:188-201. [PMID: 20946928 PMCID: PMC3013618 DOI: 10.1016/j.peptides.2010.10.006] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/17/2010] [Revised: 10/05/2010] [Accepted: 10/05/2010] [Indexed: 10/19/2022]
13
Dimerization of protegrin-1 in different environments. Int J Mol Sci 2010;11:3177-94. [PMID: 20957087 PMCID: PMC2956088 DOI: 10.3390/ijms11093177] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2010] [Revised: 08/24/2010] [Accepted: 09/03/2010] [Indexed: 11/16/2022]  Open
14
Capone R, Mustata M, Jang H, Arce FT, Nussinov R, Lal R. Antimicrobial protegrin-1 forms ion channels: molecular dynamic simulation, atomic force microscopy, and electrical conductance studies. Biophys J 2010;98:2644-52. [PMID: 20513409 PMCID: PMC2877344 DOI: 10.1016/j.bpj.2010.02.024] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2009] [Revised: 01/27/2010] [Accepted: 02/03/2010] [Indexed: 10/19/2022]  Open
15
Kim C. An NMR Study on the Phase Change of Lipid Membranes by an Antimicrobial Peptide, Protegrin-1. B KOREAN CHEM SOC 2010. [DOI: 10.5012/bkcs.2010.31.02.372] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
16
Sayyed-Ahmad A, Khandelia H, Kaznessis YN. Relative free energy of binding between antimicrobial peptides and SDS or DPC micelles. MOLECULAR SIMULATION 2009;35:986-997. [PMID: 21113423 PMCID: PMC2990536 DOI: 10.1080/08927020902902742] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
17
Coupling molecular dynamics simulations with experiments for the rational design of indolicidin-analogous antimicrobial peptides. J Mol Biol 2009;392:837-54. [PMID: 19576903 DOI: 10.1016/j.jmb.2009.06.071] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2009] [Revised: 06/08/2009] [Accepted: 06/27/2009] [Indexed: 11/21/2022]
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