A test for pre-adapted phenotypic plasticity in the invasive tree Acer negundo L

Can Transcriptomics Elucidate the Role of Regulation in Invasion Success?

When a species invades a novel environment, it must bridge the environment-phenotype mismatch in its new range to persist. Contemporary invasion biology research has focused on the role that trait variation and adaptation, and their underlying genomic factors, play in a species' adaptive potential, and thus facilitating invasion. Empirical studies have provided valuable insights into phenotypes that persist and arise in novel environments, coupled with 'omics tools that further the understanding of the contributions of genomic architecture in species establishment. Particularly, the use of transcriptomics to explore the role of plasticity in the initial stages of an invasion is growing. Here, we assess the role of various mechanisms relating to regulation and functional adaptation (often measured via the transcriptome) that support trait-specific plasticity in invasive species, allowing phenotypic variability without directly altering genomic diversity. First, we present a comprehensive review of the studies utilising transcriptomics in invasion biology. Second, we collate the evidence for and against the role of a range of regulatory processes in contributing to invasive species plasticity. Finally, we pose open questions in invasion biology where the use of transcriptome data may be valuable, as well as discuss the methodological limitations.

Adaptation to bioinvasions: When does it occur?

The presence of alien species represents a major cause of habitat degradation and biodiversity loss worldwide, constituting a critical environmental challenge of our time. Despite sometimes experiencing reduced propagule pressure, leading to a reduced genetic diversity and an increased chance of inbreeding depression, alien invaders are often able to thrive in the habitats of introduction, giving rise to the so-called "genetic paradox" of biological invasions. The adaptation of alien species to the new habitats is therefore a complex aspect of biological invasions, encompassing genetic, epigenetic, and ecological processes. Albeit numerous studies and reviews investigated the mechanistic foundation of the invaders' success, and aimed to solve the genetic paradox, still remains a crucial oversight regarding the temporal context in which adaptation takes place. Given the profound knowledge and management implications, this neglected aspect of invasion biology should receive more attention when examining invaders' ability to thrive in the habitats of introduction. Here, we discuss the adaptation mechanisms exhibited by alien species with the purpose of highlighting the timing of their occurrence during the invasion process. We analyze each stage of the invasion separately, providing evidence that adaptation mechanisms play a role in all of them. However, these mechanisms vary across the different stages of invasion, and are also influenced by other factors, such as the transport speed, the reproduction type of the invader, and the presence of human interventions. Finally, we provide insights into the implications for management, and identify knowledge gaps, suggesting avenues for future research that can shed light on species adaptability. This, in turn, will contribute to a more comprehensive understanding of biological invasions.

Effects of Warming, Phosphorous Deposition, and Both Treatments on the Growth and Physiology of Invasive Solidago canadensis and Native Artemisia argyi

Anthropogenic climate change and species invasion are two major threats to biodiversity, affecting the survival and distribution of many species around the world. Studying the responses of invasive species under climate change can help better understand the ecological and genetic mechanisms of their invasion. However, the effects of warming and phosphorus deposition on the phenotype of native and invasive plants are unknown. To address the problem, we applied warming (+2.03 °C), phosphorus deposition (4 g m^-2 yr^-1 NaH₂PO₄), and warming × phosphorus deposition to Solidago canadensis and Artemisia argyi to measure the direct effects of environmental changes on growth and physiology at the seedling stage. Our results reveal that the physiology parameters of A. argyi and S. canadensis did not change significantly with the external environment. Under phosphorus deposition, S. canadensis had higher plant height, root length, and total biomass compared to A. argyi. Interestingly, warming has an inhibitory effect on the growth of both A. argyi and S. canadensis, but overall, the reduction in total biomass for S. canadensis (78%) is significantly higher than A. argyi (52%). When the two plants are treated with warming combined with phosphorus deposition, the advantage gained by S. canadensis from phosphorus deposition is offset by the negative effects of warming. Therefore, under elevated phosphorus, warming has a negative effect on the invasive S. canadensis and reduces its growth advantage.

Phenotypic Plasticity Drives the Successful Expansion of the Invasive Plant Pedicularis kansuensis in Bayanbulak, China

To better understand the phenotypic plasticity of the highly invasive native weed, Pedicularis kansuensis, we investigated and compared phenotypes (morphology, biomass, and nutrient composition) at different levels of invasion (low: 0 < cover ≤ 30%; medium: 30% < cover ≤ 70%; and high: cover > 70%). With the increase in invasion level, the plasticity of inflorescence length, single-leaf thickness, and specific leaf area increased, while the plasticity of single-leaf area and crown width decreased. During the invasion process, we observed significant density-dependent effects, including changed morphological characteristics, increased total aboveground biomass, and decreased plant height, inflorescence length, root length, crown width, single-leaf area, structure biomass of structures (root, stem, inflorescence), and individual biomass (p < 0.05). During the reproductive period of P. kansuensis, the resource allocation (C, N, and P content, total biomass, biomass allocation) to inflorescence was significantly higher than to root and stem, while the elemental ratios (C:N, C:P, N:P) of inflorescences were significantly lower than those of roots and stems (p < 0.05). When the invasion level increased, the ratio of inflorescence C:N and biomass allocation to roots increased significantly; conversely, inflorescence N and biomass allocation to inflorescences and stems decreased significantly (p < 0.05). This led to a decrease in resource allocation to aboveground parts and more resources allocated to the roots, significantly increasing the root-to-shoot ratio (p < 0.05). Based on the phenotypic differences among different invasion levels, we suggest that P. kansuensis adapted to a competitive environment by regulating morphology, biomass, and nutrient allocation, thereby enhancing the potential of invasion and spread.

Strategies of tolerance reflected in two North American maple genomes

The first chromosome‐scale assemblies for North American members of the Acer genus, sugar maple (Acer saccharum) and boxelder (Acer negundo), as well as transcriptomic evaluation of the abiotic stress response in A. saccharum are reported. This integrated study describes in‐depth aspects contributing to each species' approach to tolerance and applies current knowledge in many areas of plant genome biology with Acer physiology to help convey the genomic complexities underlying tolerance in broadleaf tree species.

The seeds of invasion: enhanced germination in invasive European populations of black locust (Robinia pseudoacacia L.) compared to native American populations

Local adaptation and the evolution of phenotypic plasticity may facilitate biological invasions. Both processes can enhance germination and seedling recruitment, which are crucial life-history traits for plants. The rate, timing and speed of germination have recently been documented as playing a major role during the invasion process. Black locust (Robinia pseudoacacia L.) is a North American tree, which has spread widely throughout Europe. A recent study demonstrated that a few populations are the source of European black locust. Thus, invasive populations can be compared to native ones in order to identify genetic-based phenotypic differentiation and the role of phenotypic plasticity can thereby be assessed. A quantitative genetics experiment was performed to evaluate 13 juvenile traits of both native and invasive black locust populations (3000 seeds, 20 populations) subjected to three different thermal treatments (18 °C, 22 °C and 31 °C). The results revealed European populations to have a higher germination rate than the native American populations (88% versus 60%), and even when genetic distance between populations was considered. Moreover, this trait showed lower plasticity to temperature in the invasive range than in the native one. Conversely, other studied traits showed high plasticity to temperature, but they responded in a similar way to temperature increase: the warmer the temperature, the higher the growth rate or germination traits values. The demonstrated genetic differentiation between native and invasive populations testifies to a shift between ranges for the maximum germination percentage. This pattern could be due to human-mediated introduction of black locust.

Hypomethylation of the aquatic invasive plant, Ludwigia grandiflora subsp. hexapetala mimics the adaptive transition into the terrestrial morphotype

Ongoing global changes affect ecosystems and open up new opportunities for biological invasion. The ability of invasive species to rapidly adapt to new environments represents a relevant model for studying short-term adaptation mechanisms. The aquatic invasive plant, Ludwigia grandiflora subsp. hexapetala, is classified as harmful in European rivers. In French wet meadows, this species has shown a rapid transition from aquatic to terrestrial environments with emergence of two distinct morphotypes in 5 years. To understand the heritable mechanisms involved in adjustment to such a new environment, we investigate both genetic and epigenetic as possible sources of flexibility involved in this fast terrestrial transition. We found a low overall genetic differentiation between the two morphotypes arguing against the possibility that terrestrial morphotype emerged from a new adaptive genetic capacity. Artificial hypomethylation was induced on both morphotypes to assess the epigenetic hypothesis. We analyzed global DNA methylation, morphological changes, phytohormones and metabolite profiles of both morphotype responses in both aquatic and terrestrial conditions in shoot and root tissues. Hypomethylation significantly affected morphological variables, phytohormone levels and the amount of some metabolites. The effects of hypomethylation depended on morphotypes, conditions and plant tissues, which highlighted differences among the morphotypes and their plasticity. Using a correlative integrative approach, we showed that hypomethylation of the aquatic morphotype mimicked the characteristics of the terrestrial morphotype. Our data suggest that DNA methylation rather than a new adaptive genetic capacity is playing a key role in L. grandiflora subsp. hexapetala plasticity during its rapid aquatic to terrestrial transition.

Similar Impacts of Alien and Native Tree Species on Understory Light Availability in a Temperate Forest

Research Highlights: We evaluated influence of alien and native trees and shrubs on stand leaf area index to basal area ratio, indicating that both groups provide similar amounts of foliage. Background and Objectives: Foliage traits determine tree species effect on understory light availability. Direct comparisons of understory light availability due to different foliage traits of tree species are conducted less often at the stand level. We hypothesized that light availability is driven by canopy leaf area, and alien species contribution to canopy foliage will be similar to native species due to analogous patterns of biomass allocation in tree species. Materials and Methods: We studied forests dominated by alien and native tree species in Wielkopolski National Park (Western Poland). We measured light availability using the LAI-2200 canopy analyzer (Li-Cor Inc., Lincoln, NE, USA) and we calculated leaf area index (LAI) in 170 stands using published models of foliage biomass and data on specific leaf area. Results: Our study confirmed an impact of LAI on light availability in the understory layer. Analyzing the proportion of contribution to stand LAI and basal area (BA) we found that most alien species did not differ in LAI to BA ratio from native species. The exception was Prunus serotina Ehrh., with a LAI to BA ratio higher than all native and alien trees. However, the highest LAI to BA ratios we found were for the alien shrub Cotoneaster lucidus Schltdl. and native shrubs of fertile broadleaved forests. Conclusions: Our study showed that alien species contribution to shading the understory is comparable to native species, with the exception of P. serotina due to its dominance in the higher shrub canopy strata where it exhibits different patterns of biomass allocation than native trees. Our study explained that invasive tree species impact on light availability in forest ecosystems is mainly mediated by the increased quantity of foliage, not by more effective LAI to BA ratio.

Plasticity of functional traits and optimality of biomass allocation in elevational ecotypes of Arabidopsis halleri grown at different soil nutrient availabilities

In mountainous areas, plant distribution is constrained by various environmental stresses. Plasticity and constancy in plant functional traits may relate to optimal strategies at respective habitats and to ecotypic differentiation along elevation. Although plant biomass allocation has been extensively studied in relation to adaptation to soil nutrient availability along elevation, its optimality is still poorly understood. We examined soil nutrient availability in the field and conducted growth analysis for two elevational ecotypes of Arabidopsis halleri grown under different nutrient availabilities. We determined plasticity in morphological and physiological traits and evaluated optimal biomass allocation using an optimality model. Our field investigation indicated that soil nitrogen (N) availability increased rather than decreased with increasing elevation. Our growth analysis revealed that lowland ecotype was more plastic in morphological variables and N concentrations, whereas the highland ecotype was more plastic in other physiological variables such as the net assimilation rate (NAR). The leaf mass ratio (LMR) in the lowland ecotype was moderately plastic at the whole range of N availabilities, whereas LMR in the highland ecotype was very plastic at higher N availabilities only. The optimality model indicated that the LMR of the lowland ecotype was nearly optimal throughout the range of studied N availabilities, whereas that of the highland ecotype was suboptimal at low N availability. These results suggest that highland ecotype is adapted only to high N availability, whereas the lowland ecotype is adapted to a relatively wide range of N availabilities as a result of natural selection in their respective habitats. We conclude that an adaptive differentiation has occurred between the two ecotypes and plasticity in the biomass allocation is directly related to its optimization in changing environments.

Functional traits of acquisitive invasive woody species differ from conservative invasive and native species

One of the most important sources of invasiveness is species’ functional traits and their variability. However there are still few studies on invasive tree species traits conducted along resource gradients that allow for a comparison of acquisitive and conservative strategies. We aimed to assess the differences in trait variation among native alien conservative and alien acquisitive tree species along resource availability gradients (soil fertility and light availability) and to assess the traits variability of the species studied along resources availability gradients. Our study compared invasive tree species in Europe (Prunusserotina Ehrh. Quercusrubra L. and Robiniapseudoacacia L.) with their native competitors (Acerpseudoplatanus L. A.platanoides L. Quercuspetraea (Matt.) Liebl. and Fagussylvatica L.). The study was conducted on 1329 seedlings and saplings collected in a system of 372 study plots in W Poland. For each individual we assessed leaf stem and root mass ratios total biomass leaf area ratio specific leaf area and projected leaf area. Two invasive species (P.serotina and R.pseudoacacia) represented a more acquisitive strategy than native species – along litter pH and light availability gradients these species had higher leaf mass fraction specific leaf area and leaf area ratio. In contrast Q.rubra had the highest total biomass and root mass fraction. Alien species usually had higher coefficients of variation of studied traits. This suggests that relatively high projected leaf area as a way of filling space and outcompeting native species may be reached in two ways – biomass allocation to leaves and control of leaf morphology or by overall growth rate. High variability of invasive species traits also suggests randomness in seedling survival which similarly to the neutral theory of invasion highlights the necessity of including randomness in modelling biological invasions.

Processes affecting altitudinal distribution of invasive Ageratina adenophora in western Himalaya: The role of local adaptation and the importance of different life-cycle stages

The spread of invasive plants along elevational gradients is considered a threat to fragile mountain ecosystems, but it can also provide the opportunity to better understand some of the basic processes driving the success of invasive species. Ageratina adenophora (Asteraceae) is an invasive plant of global importance and has a broad distribution along elevational gradients in the Western Himalayas. Our study aimed at understanding the role of evolutionary processes (e.g. local adaptation and clinal differentiation) and different life history stages in shaping the distribution pattern of the invasive plant along an elevational gradient in the Western Himalaya. We carried out extensive distributional surveys, established a reciprocal transplant experiment with common gardens at three elevational levels, and measured a suite of traits related to germination, growth, reproduction and phenology. Our results showed a lack of local adaptation, and we did not find any evidence for clinal differentiation in any measured trait except a rather weak signal for plant height. We found that seed germination was the crucial life-cycle transition in determining the lower range limit while winter mortality of plants shaped the upper range limit in our study area, thus explaining the hump shaped distribution pattern. Differences in trait values between gardens for most traits indicated a high degree of phenotypic plasticity. Possible causes such as apomixis, seed dispersal among sites, and pre-adaptation might have confounded evolutionary processes to act upon. Our results suggest that the success and spread of Ageratina adenophora are dependent on different life history stages at different elevations that are controlled by abiotic conditions.

Plasticity-mediated persistence in new and changing environments

Baldwin's synthesis of the Organicist position, first published in 1896 and elaborated in 1902, sought to rescue environmentally induced phenotypes from disrepute by showing their Darwinian significance. Of particular interest to Baldwin was plasticity's mediating role during environmental change or colonization—plastic individuals were more likely to successfully survive and reproduce in new environments than were nonplastic individuals. Once a population of plastic individuals had become established, plasticity could further mediate the future course of evolution. The evidence for plasticity-mediated persistence (PMP) is reviewed here with a particular focus on evolutionary rescue experiments, studies on invasive success, and the role of learning in survival. Many PMP studies are methodologically limited, showing that preexistent plasticity has utility in new environments (soft PMP) rather than directly demonstrating that plasticity is responsible for persistence (hard PMP). An ideal PMP study would be able to demonstrate that (1) plasticity preexisted environmental change, (2) plasticity was fortuitously beneficial in the new environment, (3) plasticity was responsible for individual persistence in the new environment, and (4) plasticity was responsible for population persistence in succeeding generations. Although PMP is not ubiquitous, Baldwin's hypotheses have been largely vindicated in theoretical and empirical studies, but much work remains.