The future of the oceans past: towards a global marine historical research initiative

Ancient DNA suggests a historical demographic decline and genetic erosion in the Atlantic bluefin tuna

Overexploitation has depleted fish stocks during the past century; nonetheless, its genomic consequences remain poorly understood for most species. Characterizing the spatiotemporal patterns of these consequences may provide baseline estimates of past diversity and productivity to aid management targets, help predict future dynamics, and facilitate the identification of evolutionary factors limiting fish population recovery. Here, we evaluate human impacts on the evolution of the iconic Atlantic bluefin tuna (Thunnus thynnus), one of the longest and most intensely exploited marine fishes, with a tremendous cultural and economic importance. We sequenced whole genomes from modern (n = 49) and ancient (n = 41) specimens dating up to 5,000 y ago, uncovering several findings. First, we identify temporally stable patterns of population admixture, as bluefin tuna caught off Norway and in the eastern Mediterranean share a greater degree of ancestry with Gulf of Mexico bluefin tuna than western and central Mediterranean bluefin tuna. This suggests that Atlantic spawning areas are important mixing grounds for the genetic diversity of Mediterranean bluefin tuna. We model effective population size to show that Mediterranean bluefin tuna began to undergo a demographic decline by the year 1900 to an extent not observed across the previous millennia. Coinciding with this, we found that heterozygosity and nucleotide diversity were significantly lower in modern (2013 to 2020) than ancient (pre-1941) Mediterranean bluefin tuna, suggesting that bluefin tuna underwent a genetic bottleneck. With this work, we show how ancient DNA provides unique perspectives on ecological complexity with the potential to inform the management and conservation of fishes.

The Bay of Porto Paone: the first "tiny underwater nature reserve" in the Gulf of Naples (1960-1966)

From 1960 to 1966, the Bay of Porto Paone, a volcanic crater located on the islet of Nisida, was home to the first "tiny underwater nature reserve" of the Gulf of Naples. The concession of the stretch of water was requested by the Stazione Zoologica di Napoli (in 1982 renamed Stazione Zoologica Anton Dohrn), a marine biological institution traditionally devoted to laboratory studies of fundamental biological phenomena, which at the time aimed at strengthening its international visibility as a place for field ecological research. The first part of the paper contextualizes this local event in the broader international trend towards the development of ecological sciences and the rising call for field sites as essential infrastructures for ecological research. The second part reconstructs the legal, administrative and scientific practices that made it possible the establishment of an "underwater reserve" in the Bay of Porto Paone and describes the main research projects carried out there. The last part of the paper goes one step beyond historiography and addresses issues related to the importance of historical narratives on past place-based research projects for contemporary studies in historical ecology.

Historical marine footprint for Atlantic Europe, 1500-2019

Over the last 500 years, Europe (excluding Russia) consumed over 2500 million tonnes of ocean biomass. This is based on detailed historical data that we provide for human consumption per capita which was stable from 1500 to 1899 and tripled in the twentieth century. In the last 300 years, cod and herring dominated human seafood consumption. Whaling for non-food uses peaked in the 1830s and declined as cetaceans became scarce. Seafood consumption increased rapidly after 1900, and by the late 1930s, annual marine consumption in Atlantic Europe reached 7 million tonnes of biomass, facilitated by the globalisation of whaling. Atlantic European consumption, including fishmeal for animal feed, peaked at more than 12 million tonnes annually in the 1970s, but declined thereafter. The marine footprint of Atlantic Europe was significant well before modern fisheries statistics commenced. Our findings can inform future assessments of ocean health and marine life's importance for human society.

Trends in abundance indices derived from commercial fisheries for priority marine stocks in the Azores

Large-scale assessments of fish and shellfish populations may be valuable for identifying the impacts of fishing pressure on stocks, but they are rarely possible due to a lack of long-term datasets. In this study, a two-part mixed-effect model for lognormal data was used to obtain historical abundance indices for 16 priority fish and shellfish stocks in the Azores region derived from catch per unit effort (kg per day at sea per vessel) and landing per unit effort (kg per landing per vessel). This data was obtained over the past 30 years under the EC Data Collection Framework and, in addition to information on effort and catch, included details about the fishing operation such as quarter, vessel length and fishing gear. This information was analysed to investigate how abundance indices changed over the years, verify if trends from different data sources were different and, if possible, relate these results to the population and fishery dynamics. The abundance indices derived from both datasets were generally in agreement with each other. Declining trends have been observed for some commercially important species, such as forkbeard Phycis phycis, European conger Conger conger, parrotfish Sparisoma cretense, red scorpionfish Scorpaena scrofa, offshore rockfish Pontinus kuhlii, common spiny lobster Palinurus elephas, splendid alfonsino Beryx splendens and alfonsino B. decadactylus, which is concerning because they are particularly slow-growing, long-lived and have low natural mortality, making them susceptible to overfishing. The results of this study are very important and should help future stock assessment and management initiatives.

The potential of historical ecology to aid understanding of human-ocean interactions throughout the Anthropocene

Marine historical ecology emerged in the scholarly literature with the aim of understanding long-term dynamics in marine ecosystems and the outcomes of past human-ocean interactions. The use of historical sources, which differ in temporal scale and resolution to most scientific monitoring data, present both opportunities and challenges for informing our understanding of past marine ecosystems and the ways in which human communities made use of them. With an emphasis upon marine social-ecological changes over the past 200 years, I present an overview of the relevant historical ecology literature and summarise how this approach generates a richer understanding of human-ocean interactions and the legacies associated with human-induced ecosystem change. Marine historical ecology methodologies continue to be developed, whereas expanded inter- and multidisciplinary collaborations provide exciting avenues for future discoveries. Beyond scholarship, historical ecology presents opportunities to foster a more sustainable relationship with oceans going forward: by challenging ingrained perceptions of what is "normal" within marine ecosystems, reconnecting human communities to the oceans and providing cautionary lessons and exemplars of sustainable human-ocean interactions from the past. To leverage these opportunities, scholars must work alongside practitioners, managers and policy makers to foster mutual understanding, explore new opportunities to communicate historical findings and address the challenges of integrating historical data into modern-day frameworks.

Ancient DNA SNP-panel data suggests stability in bluefin tuna genetic diversity despite centuries of fluctuating catches in the eastern Atlantic and Mediterranean

Atlantic bluefin tuna (Thunnus thynnus; BFT) abundance was depleted in the late 20th and early 21st century due to overfishing. Historical catch records further indicate that the abundance of BFT in the Mediterranean has been fluctuating since at least the 16th century. Here we build upon previous work on ancient DNA of BFT in the Mediterranean by comparing contemporary (2009–2012) specimens with archival (1911–1926) and archaeological (2nd century BCE–15th century CE) specimens that represent population states prior to these two major periods of exploitation, respectively. We successfully genotyped and analysed 259 contemporary and 123 historical (91 archival and 32 archaeological) specimens at 92 SNP loci that were selected for their ability to differentiate contemporary populations or their association with core biological functions. We found no evidence of genetic bottlenecks, inbreeding or population restructuring between temporal sample groups that might explain what has driven catch fluctuations since the 16th century. We also detected a putative adaptive response, involving the cytoskeletal protein synemin which may be related to muscle stress. However, these results require further investigation with more extensive genome-wide data to rule out demographic changes due to overfishing, and other natural and anthropogenic factors, in addition to elucidating the adaptive drivers related to these.

Early evidence for historical overfishing in the Gulf of Mexico

Fisheries encompass complex interplays between social, economic, and environmental factors, but limitations on historical fisheries data can hamper efforts to identify and contextualize the long-term spatiotemporal patterns that shape them. We integrate 2500 years of stable isotope (δ³⁴S, δ¹³C, and δ¹⁵N) and zooarchaeological evidence from Gulf of Mexico fisheries to assess cultural, demographic, and technological changes affecting sheepshead (Archosargus probatocephalus) populations and fishing practices in Louisiana, USA. Concurrent with human population growth, average sizes of sheepshead caught decreased from the 1720s to 1830s. The size of fish caught after the 1830s increased to pre-1720 levels at the same time that isotopic compositions of fish bone collagen show that fish were being caught from a more diverse range of ecosystems, including distant seagrass beds. Our findings provide the first evidence for large-scale depressions of historical sheepshead populations and the processes driving them, including rapid human population growth and sustained harvesting pressure.

Marine resource abundance drove pre-agricultural population increase in Stone Age Scandinavia

How climate and ecology affect key cultural transformations remains debated in the context of long-term socio-cultural development because of spatially and temporally disjunct climate and archaeological records. The introduction of agriculture triggered a major population increase across Europe. However, in Southern Scandinavia it was preceded by ~500 years of sustained population growth. Here we show that this growth was driven by long-term enhanced marine production conditioned by the Holocene Thermal Maximum, a time of elevated temperature, sea level and salinity across coastal waters. We identify two periods of increased marine production across trophic levels (P1 7600–7100 and P2 6400–5900 cal. yr BP) that coincide with markedly increased mollusc collection and accumulation of shell middens, indicating greater marine resource availability. Between ~7600–5900 BP, intense exploitation of a warmer, more productive marine environment by Mesolithic hunter-gatherers drove cultural development, including maritime technological innovation, and from ca. 6400–5900 BP, underpinned a ~four-fold human population growth.

How the development of human societies is influenced through their ecological environment and climatic conditions has been the subject of intensive debate. Here, the authors present multi-proxy data from southern Scandinavia which suggests that pre-agricultural population growth there was likely influenced by enhanced marine production.

An osteometric approach to reconstruct the length and weight of Lutjanus argentiventris (Perciformes: Lujtanidae) for archaeological and ecological purposes

ABSTRACT Lutjanus argentiventris presents a large intertropical distribution within the Eastern Pacific, which is as important to fisheries now as it was in the pre-Hispanic period. The purpose of this article is to present an allometric model that enables the size and weight of L. argentiventris to be predicted, using the isolated bones found in archaeological and paleontological contexts or the stomach contents of ichthyophagous species. A modern collection of L. argentiventris from Ecuador was used, composed of 37 individuals covering a wide range of sizes and weights. The total length (TL), standard length (SL), and total fresh weight (W) of each individual was gathered. The TL of the sample ranged between 210 and 760 mm, the SL between 164 and 627 mm and the W ranged between 123 and 6550 g. The most frequent bones (15) and otoliths were chosen and 39 measurements were taken. The total length-weight relationship was W = 6E-06 TL3.1513 with R 2 = 0.997. In general, it was observed that the relationships between the TL and the bone measurements had a strong correlation (R² > 0.95). The allometric model will be useful not only for archaeologists but also for biologists working on historical ecology.

An environmental (pre)history of European fishing: past and future archaeological contributions to sustainable fisheries

This paper explores the past and potential contribution of archaeology to marine historical ecology. The primary focus is European fishing of marine and diadromous taxa, with global comparisons highlighting the wider applicability of archaeological approaches. The review illustrates how study of excavated fish bones, otoliths and shells can inform our understanding of: (a) changes in biogeography, including the previous distribution of lost species; (b) long-term fluctuations in the aquatic environment, including climate change; (c) the intensity of exploitation and other anthropogenic effects; (d) trade, commodification and globalisation. These issues are also relevant to inform fisheries conservation and management targets. Equally important, the long (pre)history of European fishing raises awareness of our ecological heritage debt, owed for centuries of wealth, sustenance and well-being, and for which we share collective responsibility. This debt represents both a loss and a reason for optimism, insofar as it is a reservoir of potential to be filled by careful stewardship of our rivers, lakes, seas and oceans.

Collateral damage to marine and terrestrial ecosystems from Yankee whaling in the 19th century

Yankee whalers of the 19th century had major impacts on populations of large whales, but these leviathans were not the only taxa targeted. Here, we describe the “collateral damage,” the opportunistic or targeted taking of nongreat whale species by the American whaling industry. Using data from 5,064 records from 79 whaling logs occurring between 1840 and 1901, we show that Yankee whalers captured 5,255 animals across three large ocean basins from 32 different taxonomic categories, including a wide range of marine and terrestrial species. The taxa with the greatest number of individuals captured were walruses (Odobenus rosmarus), ducks (family Anatidae), and cod (Gadus sp.). By biomass, the most captured species were walruses, grampus (a poorly defined group within Odontoceti), and seals (family Otariidae). The whalers captured over 2.4 million kg of nongreat whale meat equaling approximately 34 kg of meat per ship per day at sea. The species and areas targeted shifted over time in response to overexploitation of whale populations, with likely intensive local impacts on terrestrial species associated with multiyear whaling camps. Our results show that the ecosystem impacts of whaling reverberated on both marine and coastal environments.

The History and Characteristics of the Mobulid Ray Fishery in the Bohol Sea, Philippines

The fishery for mobulid rays, also known as devil rays, has been practiced in the Bohol Sea for over a century yet very little is known about its history and characteristics. This study provides the first detailed description of the mobulid ray fishery in the Bohol Sea, Philippines. It describes the history and evolution of the fishery from the 19th century to 2013. It characterizes the fishery based on the species targeted, gears used, the organization, catch distribution, processing, monetary value, and the market of its by-products. This paper also analyses the changes that occurred through time, the management of the fishery and the drivers of the fishery. A multi-disciplinary approach was employed by combining ethno-historical research methods and catch landing monitoring in four primary sites within the Bohol Sea. This fishery began as an artisanal fishery using sail and row boats equipped with harpoons and gaff hooks practiced in at least four coastal villages in Bohol, Camiguin and Limasawa. The fishing fleet has decreased since the beginning of the 20th century however, with the motorization of the fishery and shift to the use of gillnets, the extent of the fishing grounds and market of the products have expanded. Four species of mobulid rays are caught in the Bohol Sea: Manta birostris, Mobula japanica, Mobula thurstoni and Mobula tarapacana. A fifth species, targeted by a fishing community off Dinagat as an off-shoot of the Bohol fishery is most likely the Manta alfredi. Currently, the fishery for mobulids is centered in Bohol Province where it has been practiced longest. The monetary value of mobulids in this region has increased and the dependence of fishing communities for their livelihood is significant. The unique characteristics of this fishery and the socio-cultural context within which it operates merits a thorough investigation in order to design the appropriate management strategy.

Patterns of Coral-Reef Finfish Species Disappearances Inferred from Fishers' Knowledge in Global Epicentre of Marine Shorefish Diversity

In the Philippines, very high fishing pressure coincides with the globally greatest number of shorefish species, yet no long-term fisheries data are available to explore species-level changes that may have occurred widely in the most species rich and vulnerable marine ecosystem, namely coral reefs. Through 2655 face-to-face interviews conducted between August 2012 and July 2014, we used fishers’ recall of past catch rates of reef-associated finfish to infer species disappearances from catches in five marine key biodiversity areas (Lanuza Bay, Danajon Bank, Verde Island Passage, Polillo Islands and Honda Bay). We modeled temporal trends in perceived catch per unit effort (CPUE) based on fishers’ reports of typical good days’ catches using Generalized Linear Mixed Modelling. Fifty-nine different finfish disappeared from catches between the 1950s and 2014; 42 fish were identified to species level, two to genus, seven to family and eight to local name only. Five species occurring at all sites with the greatest number of fishers reporting zero catches were the green bumphead parrotfish (Bolbometopon muricatum), humphead wrasse (Cheilinus undulatus), African pompano (Alectis ciliaris), giant grouper (Epinephelus lanceolatus) and mangrove red snapper (Lutjanus argentimaculatus). Between the 1950s and 2014, the mean perceived CPUE of bumphead parrotfish declined by 88%, that of humphead wrasse by 82%, African pompano by 66%, giant grouper by 74% and mangrove red snapper by 64%. These declines were mainly associated with excess and uncontrolled fishing, fish life-history traits like maximum body size and socio-economic factors like access to market infrastructure and services, and overpopulation. The fishers’ knowledge is indicative of extirpations where evidence for these losses was otherwise lacking. Our models provide information as basis for area-based conservation and regional resource management particularly for the more vulnerable, once common, large, yet wide-ranging reef finfish species.

The globalization of naval provisioning: ancient DNA and stable isotope analyses of stored cod from the wreck of the Mary Rose, AD 1545

A comparison of ancient DNA (single-nucleotide polymorphisms) and carbon and nitrogen stable isotope evidence suggests that stored cod provisions recovered from the wreck of the Tudor warship Mary Rose, which sank in the Solent, southern England, in 1545, had been caught in northern and transatlantic waters such as the northern North Sea and the fishing grounds of Iceland and Newfoundland. This discovery, underpinned by control data from archaeological samples of cod bones from potential source regions, illuminates the role of naval provisioning in the early development of extensive sea fisheries, with their long-term economic and ecological impacts.