Reef calcifiers are adapted to episodic heat stress but vulnerable to sustained warming

Global diversity patterns of larger benthic foraminifera under future climate change

Global warming threatens the viability of tropical coral reefs and associated marine calcifiers, including symbiont-bearing larger benthic foraminifera (LBF). The impacts of current climate change on LBF are debated because they were particularly diverse and abundant during past warm periods. Studies on the responses of selected LBF species to changing environmental conditions reveal varying results. Based on a comprehensive review of the scientific literature on LBF species occurrences, we applied species distribution modeling using Maxent to estimate present-day and future species richness patterns on a global scale for the time periods 2040-2050 and 2090-2100. For our future projections, we focus on Representative Concentration Pathway 6.0 from the Intergovernmental Panel on Climate Change, which projects mean surface temperature changes of +2.2°C by the year 2100. Our results suggest that species richness in the Central Indo-Pacific is two to three times higher than in the Bahamian ecoregion, which we have identified as the present-day center of LBF diversity in the Atlantic. Our future predictions project a dramatic temperature-driven decline in low-latitude species richness and an increasing widening bimodal latitudinal pattern of species diversity. While the central Indo-Pacific, now the stronghold of LBF diversity, is expected to be most pushed outside of the currently realized niches of most species, refugia may be largely preserved in the Atlantic. LBF species will face large-scale non-analogous climatic conditions compared to currently realized climate space in the near future, as reflected in the extensive areas of extrapolation, particularly in the Indo-Pacific. Our study supports hypotheses that species richness and biogeographic patterns of LBF will fundamentally change under future climate conditions, possibly initiating a faunal turnover by the late 21st century.

Are physiological responses in foraminifera reliable environmental stress bioindicators? A systematic review

Foraminifera are considered good bioindicators of environmental stress based on morphological abnormalities, but physiological responses occur far earlier and have not been evaluated as pollution markers. The aim of this review was to collate all published articles reporting physiological changes in foraminifera after environmental and anthropogenic stressors, to evaluate their reliability as early markers of environmental stress. We reviewed 70 studies, meeting the inclusion criteria, reporting 13 physiological effects classes after exposure to 17 different stressors. Immune functions, bleaching and lifecycle disruptions, were the most reported. Amphistegina and Ammonia showed high proportion of effects with lead and mercury, with a significant relationship between these heavy metals and the number of physiological effects classes in Ammonia, and between bleaching in Amphistegina gibbosa and Amphistegina lobifera with solar light and temperature. This suggests physiological responses are potentially reliable early indicators of environmental stress. It is necessary to increase quantitative physiological measures and standard exposure protocols in order to properly evaluate these organisms as pollution bioindicators.

Thermal stress responses of the antipatharian Stichopathes sp. from the mesophotic reef of Mo'orea, French Polynesia

Antipatharians, also called black corals, are present in almost all oceans of the world, until extreme depths. In several regions, they aggregate in higher densities to form black coral beds that support diverse animal communities and create biodiversity hotspots. These recently discovered ecosystems are currently threatened by fishing activities and illegal harvesting for commercial purposes. Despite this, studies dedicated to the physiology of antipatharians are scarce and their responses to global change stressors have remained hardly explored since recently. Here, we present the first study on the physiological responses of a mesophotic antipatharian Stichopathes sp. (70-90 m) to thermal stress through a 16-d laboratory exposure (from 26 to 30.5 °C). Oxygen consumption measurements allowed identifying the physiological tipping point of Stichopathes sp. (T_opt = 28.3 °C; 2.7 °C above mean ambient condition). Our results follow theoretical predictions as performances start to decrease beyond T_opt, with lowered oxygen consumption rates, impairment of the healing capacities, increased probability of tissue necrosis and stress responses activated as a function of temperature (i.e. increase in mucocyte density and total antioxidant capacity). Altogether, our work indicates that Stichopathes sp. lives at suboptimal performances during the coldest months of the year, but also that it is likely to have low acclimatization capacity and a narrow thermal breadth.

The combined effects of rising temperature and salinity may halt the future proliferation of symbiont-bearing foraminifera as ecosystem engineers

Rising sea surface temperatures and extreme heat waves are affecting symbiont-bearing tropical calcifiers such as corals and Large Benthic Foraminifera (LBF). In many ecosystems, parallel to warming, global change unleashes a host of additional changes to the marine environment, and the combined effect of such multiple stressors may be far greater than those of temperature alone. One such additional stressor, positively correlated to temperature in evaporation-dominated shallow-water settings is rising salinity. Here we used laboratory culture experiments to evaluate the combined thermohaline tolerance of one of the most common LBF species and carbonate producer, Amphistegina lobifera. The experiments were done under ambient (39 psu) and modified (30, 45, 50 psu) salinities and at optimum (25 °C) and warm temperatures (32 °C). Calcification of the A. lobifera holobiont was evaluated by measuring alkalinity loss in the culturing seawater, as an indication of carbonate ion uptake. The vitality of the symbionts was determined by monitoring pigment loss of the holobiont and their photosynthetic performances by measuring dissolved oxygen. We further evaluated the growth of Peneroplis (P. pertusus and P. planatus), a Rhodophyta bearing LBF, which is known to tolerate high temperatures, under elevated salinities. The results show that the A. lobifera holobiont exhibits optimal performance at 39 psu and 25 °C, and its growth is significantly reduced upon exposure to 30, 45, 50 psu and under all 32 °C treatments. Salinity and temperature exhibit a significant interaction, with synergic effects observed in most treatments. Our results confirm that Peneroplis has a higher tolerance to elevated temperature and salinity compared to A. lobifera, implying that a further increase of salinity and temperatures may result in a regime shift from Amphistegina- to Peneroplis-dominated assemblages.

Ecosystem design as an avenue for improving services provided by carbonate producing marine ecosystems

Ecosystem Design (ED) is an approach for constructing habitats that places human needs for ecosystem services at the center of intervention, with the overarching goal of establishing self-sustaining habitats which require limited management. This concept was originally developed for use in mangrove ecosystems, and is understandably controversial, as it markedly diverges from other protection approaches that assign human use a minor priority or exclude it. However, the advantage of ED lies within the considered implementation of these designed ecosystems, thus preserving human benefits from potential later disturbances. Here, we outline the concept of ED in tropical carbonate depositional systems and discuss potential applications to aid ecosystem services such as beach nourishment and protection of coastlines and reef islands at risk from environmental and climate change, CO₂ sequestration, food production, and tourism. Biological carbonate sediment production is a crucial source of stability of reef islands and reef-rimmed coastlines. Careful implementation of designed carbonate depositional ecosystems could help counterbalance sea-level rise and manage documented erosion effects of coastal constructions. Importantly, adhering to the core ethos of ED, careful dynamic assessments which provide a balanced approach to maximizing ecosystem services (e.g., carbonate production), should identify and avoid any potential damages to existing functioning ecosystems.

Acclimation history modulates effect size of calcareous algae (Halimeda opuntia) to herbicide exposure under future climate scenarios

Tropical marine habitat-builders such as calcifying green algae can be susceptible to climate change (warming and acidification). This study evaluated the cumulative effects of ocean warming (OW), ocean acidification (OA) and the herbicide diuron on the calcifying green algae Halimeda opuntia. We also assessed the influence of acclimation history to experimental climate change conditions on physiological responses. H. opuntia were exposed for 15 days to orthogonal combinations of three climate scenarios [ambient (28 °C, pCO₂ = 378 ppm), 2050 (29 °C, pCO₂ = 567 ppm) and 2100 (30 °C, pCO₂ = 721 ppm)] and to six diuron concentrations (up to 29 μg L^-1). Half of the H. opuntia had been acclimated for eight months to the climate scenarios in a mesocosm approach, while the remaining half were not pre-acclimated, as is current practice in most experiments. Climate effects on quantum yield (ΔF/Fm'), photosynthesis and calcification in future climate scenarios were significantly stronger (by -24, -46 and +26%, respectively) in non-acclimated algae, suggesting experimental bias may exaggerate effects in organisms not appropriately acclimated to future-climate conditions. Thus, full analysis was done on acclimated plants only. Interactive effects of future climate scenarios and diuron were observed for ΔF/Fm', while the detrimental effects of climate and diuron on net photosynthesis and total antioxidant capacity (TAC) were additive. Calcification-related enzymes were negatively affected only by diuron, with inhibition of Ca-ATPase and upregulation of carbonic anhydrase. The combined and consistent physiological and biochemical evidence of negative impacts (across six indicators) of both herbicide and future-climate conditions on the health of H. opuntia highlights the need to address both climate change and water quality. Guideline values for contaminants may also need to be lowered considering 'climate adjusted thresholds'. Importantly, this study highlights the value of applying substantial future climate acclimation periods in experimental studies to avoid exaggerated organism responses to OW and OA.

Symbiont-bearing foraminifera as health proxy in coral reefs in the equatorial margin of Brazil

Coral communities worldwide are progressively more stressed by anthropogenic activities that increase fluxes of sediment and other pollutants to nearshore areas. Some nearshore coral reef environments off the Equatorial margin of Brazil, including Pirangi and Maracajaú, Rio Grande do Norte (RN, Brazil), seem to be under human-induced stress. However, the horizontal extent of this stress, its effects, and assessment of the environmental response depend on the hydrodynamic conditions (circulation and deposition patterns), sedimentary facies, and the availability of biological indicators. We investigate two Brazilian live reefal corals' communities by examining seven photosymbiont-bearing species (PSB) of Foraminifera, Amphisorus hemprichii, Amphistegina gibbosa, Archaias angulatus, Borelis schlumbergeri, Heterostegina antillarum, Peneroplis carinatus, and Laevipeneroplis proteus, using numerical analysis FORAM Index (FI), grain size, and particulate organic and inorganic carbonate. Here, we show that coarse sand fraction followed by fine sand fraction and high hydrodynamics plays an important role in transportation and deposition of sediments and foraminiferal tests in the study area. According to FI results, conditions at Pirangi are not suitable for coral reef growth. Maracajaú has sites that are suitable for coral reef growth and sites where coral could not survive after a stress event. We need long-term assessments to improve our knowledge of the distribution and ecological importance of Brazilian reef-dwelling foraminifers and to extend the application of FI to monitoring management plans of the Pirangi and Maracajaú National Marine Parks by providing a first insight into the biodiversity patterns and a reliable tool of the reconstruction of paleo reef health.

Ecotoxicological responses of a reef calcifier exposed to copper, acidification and warming: A multiple biomarker approach

Multiple global and local stressors threat coral reefs worldwide, and symbiont-bearing foraminifera are bioindicators of reef health. The aim of this study was to investigate single and combined effects of copper (Cu) and climate change related stressors (ocean acidification and warming) on a symbiont-bearing foraminifer by means of an integrated biomarker analysis. Using a mesocosm approach, Amphistegina gibbosa were exposed for 25 days to acidification, warming and/or Cu contamination on a full orthogonal design (two levels each factor). Cu was the main factor increasing bleaching and respiration rates. Warming was the main cause of mortality and reduced growth. Calcification related enzymes were inhibited in response to Cu exposure and, in general, the inhibition was stronger under climate change. Multiple biological endpoints responded to realistic exposure scenarios in different ways, but evidenced general stress posed by climate change combined with Cu. These biological responses drove the high values found for the 'stress index' IBR (Integrated Biomarker Response) - indicating general organismal health impairment under the multiple stressor scenario. Our results provide insights for coral reef management by detecting potential monitoring tools. The ecotoxicological responses indicated that Cu reduces the tolerance of foraminifera to climate change (acidification + warming). Once the endpoints analysed have a high ecological relevance, and that responses were evaluated on a classical reef bioindicator species, these results highlight the high risk of climate change and metal pollution co-exposure to coral reefs. Integrated responses allowed a better effects comprehension and are pointed as a promising tool to monitor pollution effects on a changing ocean.

Challenges in using CellTracker Green on foraminifers that host algal endosymbionts

The uses of fluorescent microscopy and fluorescent probes, such as the metabolically activated probe CellTracker™  Green CMFDA (CTG), have become common in studies of living Foraminifera. This metabolic requirement, as well as the relatively quick production of the fluorescent reaction products, makes CTG a prime candidate for determining mortality in bioassay and other laboratory experiments. Previous work with the foraminifer Amphistegina gibbosa, which hosts diatom endosymbionts, has shown that the species is capable of surviving both acute chemical exposure and extended periods of total darkness by entering a low-activity dormant state. This paper explores the use of CTG and fluorescent microscopy to determine mortality in such experiments, as well as to explore the physiology of dormant foraminifers. The application of CTG was found to be complicated by the autofluorescence of the diatom symbionts, which masks the signal of the CTG, as well as by interactions between CTG and propylene glycol, a chemical of interest known to cause dormancy. These complications necessitated adapting methods from earlier studies using CTG. Here we present observations on CTG fluorescence and autofluorescence in A. gibbosa following both chemical exposure and periods of total darkness. While CTG can indicate vital activity in dormant foraminifers, complications include underestimates of total survival and recovery, and falsely indicating dead individuals as live due to rapid microbial colonization. Nonetheless, the brightness of the CTG signal in dormant individuals exposed to propylene glycol supports previously published results of survival patterns in A. gibbosa. Observations of CTG fluorescence in individuals kept for extended periods in aphotic conditions indicate uptake of CTG may begin within 30 min of exposure to light, suggesting darkness-induced dormancy and subsequent recovery can occur on short time scales. These results suggest that CTG accurately reflects changes associated with dormancy, and can be useful in laboratory experiments utilizing symbiont-bearing foraminifers.

Disentangling thermal stress responses in a reef-calcifier and its photosymbionts by shotgun proteomics

The proliferation of key marine ecological engineers and carbonate producers often relies on their association with photosymbiotic algae. Evaluating stress responses of these organisms is important to predict their fate under future climate projections. Physiological approaches are limited in their ability to resolve the involved molecular mechanisms and attribute stress effects to the host or symbiont, while probing and partitioning of proteins cannot be applied in organisms where the host and symbiont are small and cannot be physically separated. Here we apply a label-free quantitative proteomics approach to detect changes of proteome composition in the diatom-bearing benthic foraminifera Amphistegina gibbosa experimentally exposed to three thermal-stress scenarios. We developed a workflow for protein extraction from less than ten specimens and simultaneously analysed host and symbiont proteomes. Despite little genomic data for the host, 1,618 proteins could be partially assembled and assigned. The proteomes revealed identical pattern of stress response among stress scenarios as that indicated by physiological measurements, but allowed identification of compartment-specific stress reactions. In the symbiont, stress-response and proteolysis-related proteins were up regulated while photosynthesis-related proteins declined. In contrast, host homeostasis was maintained through chaperone up-regulation associated with elevated proteosynthesis and proteolysis, and the host metabolism shifted to heterotrophy.