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For: Holterman M, Karegar A, Mooijman P, van Megen H, van den Elsen S, Vervoort MTW, Quist CW, Karssen G, Decraemer W, Opperman CH, Bird DM, Kammenga J, Goverse A, Smant G, Helder J. Disparate gain and loss of parasitic abilities among nematode lineages. PLoS One 2017;12:e0185445. [PMID: 28934343 DOI: 10.1371/journal.pone.0185445] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Accepted: 09/12/2017] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Guo W, Li H, Wei X, Luo N, Shi M. Molecular and Morphological Characteristics of a Novel Cyst Nematode in the Rhizosphere of Artemisia lavandulaefolia DC. in Gansu Province, Northwest China. Pathogens 2024;13:881. [PMID: 39452752 PMCID: PMC11510491 DOI: 10.3390/pathogens13100881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 09/30/2024] [Accepted: 10/06/2024] [Indexed: 10/26/2024]  Open
2
Calia G, Porracciolo P, Chen Y, Kozlowski D, Schuler H, Cestaro A, Quentin M, Favery B, Danchin EGJ, Bottini S. Identification and characterization of specific motifs in effector proteins of plant parasites using MOnSTER. Commun Biol 2024;7:850. [PMID: 38992096 PMCID: PMC11239862 DOI: 10.1038/s42003-024-06515-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 06/27/2024] [Indexed: 07/13/2024]  Open
3
Yu J, Yuan Q, Chen C, Xu T, Jiang Y, Hu W, Liao A, Zhang J, Le X, Li H, Wang X. A root-knot nematode effector targets the Arabidopsis cysteine protease RD21A for degradation to suppress plant defense and promote parasitism. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;118:1500-1515. [PMID: 38516730 DOI: 10.1111/tpj.16692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 02/07/2024] [Accepted: 02/14/2024] [Indexed: 03/23/2024]
4
Subbotin SA. Rapid Detection of the Strawberry Foliar Nematode Aphelenchoides fragariae Using Recombinase Polymerase Amplification Assay with Lateral Flow Dipsticks. Int J Mol Sci 2024;25:844. [PMID: 38255917 PMCID: PMC10815920 DOI: 10.3390/ijms25020844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 01/03/2024] [Accepted: 01/08/2024] [Indexed: 01/24/2024]  Open
5
Lai CK, Lee YC, Ke HM, Lu MR, Liu WA, Lee HH, Liu YC, Yoshiga T, Kikuchi T, Chen PJ, Tsai IJ. The Aphelenchoides genomes reveal substantial horizontal gene transfers in the last common ancestor of free-living and major plant-parasitic nematodes. Mol Ecol Resour 2023;23:905-919. [PMID: 36597348 DOI: 10.1111/1755-0998.13752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Revised: 12/08/2022] [Accepted: 12/23/2022] [Indexed: 01/05/2023]
6
Mitchum MG, Liu X. Peptide Effectors in Phytonematode Parasitism and Beyond. ANNUAL REVIEW OF PHYTOPATHOLOGY 2022;60:97-119. [PMID: 35385672 DOI: 10.1146/annurev-phyto-021621-115932] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
7
Siddique S, Coomer A, Baum T, Williamson VM. Recognition and Response in Plant-Nematode Interactions. ANNUAL REVIEW OF PHYTOPATHOLOGY 2022;60:143-162. [PMID: 35436424 DOI: 10.1146/annurev-phyto-020620-102355] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
8
Ahmed M, Roberts NG, Adediran F, Smythe AB, Kocot KM, Holovachov O. Phylogenomic Analysis of the Phylum Nematoda: Conflicts and Congruences With Morphology, 18S rRNA, and Mitogenomes. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2021.769565] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
9
Ahmed M, Holovachov O. Twenty Years after De Ley and Blaxter-How Far Did We Progress in Understanding the Phylogeny of the Phylum Nematoda? Animals (Basel) 2021;11:3479. [PMID: 34944255 PMCID: PMC8697950 DOI: 10.3390/ani11123479] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 11/29/2021] [Accepted: 11/30/2021] [Indexed: 11/21/2022]  Open
10
Vieira P, Myers RY, Pellegrin C, Wram C, Hesse C, Maier TR, Shao J, Koutsovoulos GD, Zasada I, Matsumoto T, Danchin EGJ, Baum TJ, Eves-van den Akker S, Nemchinov LG. Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis. PLoS Pathog 2021;17:e1010036. [PMID: 34748609 PMCID: PMC8601627 DOI: 10.1371/journal.ppat.1010036] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 11/18/2021] [Accepted: 10/15/2021] [Indexed: 11/18/2022]  Open
11
Vlaar LE, Bertran A, Rahimi M, Dong L, Kammenga JE, Helder J, Goverse A, Bouwmeester HJ. On the role of dauer in the adaptation of nematodes to a parasitic lifestyle. Parasit Vectors 2021;14:554. [PMID: 34706780 PMCID: PMC8555053 DOI: 10.1186/s13071-021-04953-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 08/13/2021] [Indexed: 11/25/2022]  Open
12
Characterization of the Habitat- and Season-Independent Increase in Fungal Biomass Induced by the Invasive Giant Goldenrod and Its Impact on the Fungivorous Nematode Community. Microorganisms 2021;9:microorganisms9020437. [PMID: 33669897 PMCID: PMC7923273 DOI: 10.3390/microorganisms9020437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 02/08/2021] [Accepted: 02/14/2021] [Indexed: 12/04/2022]  Open
13
Montarry J, Mimee B, Danchin EGJ, Koutsovoulos GD, Ste-Croix DT, Grenier E. Recent Advances in Population Genomics of Plant-Parasitic Nematodes. PHYTOPATHOLOGY 2021;111:40-48. [PMID: 33151824 DOI: 10.1094/phyto-09-20-0418-rvw] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
14
Carlson CJ, Dallas TA, Alexander LW, Phelan AL, Phillips AJ. What would it take to describe the global diversity of parasites? Proc Biol Sci 2020;287:20201841. [PMID: 33203333 PMCID: PMC7739500 DOI: 10.1098/rspb.2020.1841] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 10/22/2020] [Indexed: 11/12/2022]  Open
15
Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes. Genes (Basel) 2020;11:genes11111347. [PMID: 33202889 PMCID: PMC7696266 DOI: 10.3390/genes11111347] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Revised: 11/06/2020] [Accepted: 11/10/2020] [Indexed: 11/17/2022]  Open
16
Mathew R, Opperman CH. Current Insights into Migratory Endoparasitism: Deciphering the Biology, Parasitism Mechanisms, and Management Strategies of Key Migratory Endoparasitic Phytonematodes. PLANTS (BASEL, SWITZERLAND) 2020;9:E671. [PMID: 32466416 PMCID: PMC7356796 DOI: 10.3390/plants9060671] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 05/20/2020] [Accepted: 05/22/2020] [Indexed: 01/12/2023]
17
Harkes P, van Steenbrugge JJM, van den Elsen SJJ, Suleiman AKA, de Haan JJ, Holterman MHM, Helder J. Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management. FRONTIERS IN PLANT SCIENCE 2020;10:1697. [PMID: 31998352 PMCID: PMC6965313 DOI: 10.3389/fpls.2019.01697] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 12/02/2019] [Indexed: 06/10/2023]
18
Consoli E, Ruthes AC, Reinhard E, Dahlin P. First Morphological and Molecular Report of Aphelenchoides blastophthorus on Strawberry Plants in Switzerland. PLANT DISEASE 2019;103:2851-2856. [PMID: 31486741 DOI: 10.1094/pdis-07-18-1241-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
19
Mathew R, Opperman CH. The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes. PLoS One 2019;14:e0224391. [PMID: 31652297 PMCID: PMC6814228 DOI: 10.1371/journal.pone.0224391] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 10/11/2019] [Indexed: 11/19/2022]  Open
20
Rybarczyk-Mydłowska K, Dmowska E, Kowalewska K. Phylogenetic studies on three Helicotylenchus species based on 28S rDNA and mtCOI sequence data. J Nematol 2019;51:1-17. [PMID: 31169369 PMCID: PMC6929645 DOI: 10.21307/jofnem-2019-033] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Indexed: 11/29/2022]  Open
21
Masonbrink R, Maier TR, Muppirala U, Seetharam AS, Lord E, Juvale PS, Schmutz J, Johnson NT, Korkin D, Mitchum MG, Mimee B, den Akker SEV, Hudson M, Severin AJ, Baum TJ. The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. BMC Genomics 2019;20:119. [PMID: 30732586 PMCID: PMC6367775 DOI: 10.1186/s12864-019-5485-8] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 01/28/2019] [Indexed: 12/30/2022]  Open
22
Fanelli E, Troccoli A, De Luca F. Functional Variation of Two Novel Cellulases, Pv-eng-5 and Pv-eng-8, and the Heat Shock 90 Gene, Pv-hsp-90, in Pratylenchus vulnus and Their Expression in Response to Different Temperature Stress. Int J Mol Sci 2018;20:E107. [PMID: 30597892 PMCID: PMC6337429 DOI: 10.3390/ijms20010107] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Revised: 12/12/2018] [Accepted: 12/20/2018] [Indexed: 11/18/2022]  Open
23
Werner MS, Sieriebriennikov B, Prabh N, Loschko T, Lanz C, Sommer RJ. Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation. Genome Res 2018;28:1675-1687. [PMID: 30232198 PMCID: PMC6211652 DOI: 10.1101/gr.234872.118] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Accepted: 09/05/2018] [Indexed: 12/22/2022]
24
Lilley CJ, Maqbool A, Wu D, Yusup HB, Jones LM, Birch PRJ, Banfield MJ, Urwin PE, Eves-van den Akker S. Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genet 2018;14:e1007310. [PMID: 29641602 PMCID: PMC5919673 DOI: 10.1371/journal.pgen.1007310] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 04/26/2018] [Accepted: 03/16/2018] [Indexed: 11/24/2022]  Open
25
Smant G, Helder J, Goverse A. Parallel adaptations and common host cell responses enabling feeding of obligate and facultative plant parasitic nematodes. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018;93:686-702. [PMID: 29277939 DOI: 10.1111/tpj.13811] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2017] [Revised: 12/10/2017] [Accepted: 12/14/2017] [Indexed: 05/08/2023]
26
Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Guzeeva ES, Da Silva C, Guy J, Labadie K, Esmenjaud D, Helder J, Jones JT, den Akker SEV. The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes. Genes (Basel) 2017;8:genes8100287. [PMID: 29065523 PMCID: PMC5664137 DOI: 10.3390/genes8100287] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 10/16/2017] [Accepted: 10/18/2017] [Indexed: 11/16/2022]  Open
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