Species, sex and geo-location identification of seized tiger (Panthera tigris tigris) parts in Nepal-A molecular forensic approach

FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex-Situ Conservation

Illegal wildlife trade is a growing problem internationally. Poaching of animals not only leads to the extinction of populations and species but also has serious consequences for ecosystems and economies. This study introduces a molecular marker system that authorities can use to detect and substantiate wildlife trafficking. SNPSTR markers combine short tandem repeats with single nucleotide polymorphisms within an amplicon to increase discriminatory power. Within the FOGS (Forensic Genetics for Species Protection) project, we have established SNPSTR marker sets for 74 vertebrate species. On average, each set consists of 19 SNPSTR markers with 82 SNPs per set. More than 1300 SNPSTR markers and over 300 STR markers were identified. Also, through its biobanking pipeline, the FOGS project enabled the cryopreservation of somatic cells from 91 vertebrate species as well as viable tissues for later cell initiation from a further 109 species, providing future strategies for ex situ conservation. In addition, many more fixed tissues and DNA samples of endangered species were biobanked. Therefore, FOGS was an interdisciplinary study, combining molecular wildlife forensics and conservation tools. The SNPSTR sets and cell culture information are accessible through the FOGS database (https://fogs-portal.de/data) that is open to scientists, researchers, breeders and authorities worldwide to protect wildlife from illegal trade.

From confiscation to conservation: Wildlife DNA forensic for species identification of confiscated Felidae in Indonesia

Illegal wildlife trade poses a significant threat to Indonesia's biodiversity, especially among its diverse Felidae species (cats). While molecular methods have proven effective for identifying some Felidae species, there remains a gap in comparing these techniques across different endemic Felidae species in Indonesia, particularly in cases involving multiple species in confiscated wildlife products. This study applies DNA forensic techniques to analyze 38 confiscated Felidae samples, identifying four species: Sumatran tiger (Panthera tigris sumatrae), leopard (Panthera pardus), leopard cat (Prionailurus bengalensis), and clouded leopard (Neofelis nebulosa). Notably, 21 samples identified as Sumatran tigers showed 100 % similarity to the reference sequence, demonstrating the effectiveness of custom-designed primers. The analysis also revealed a diverse range of biological materials, supporting the robustness of DNA forensics in wildlife conservation. A Bayesian phylogenetic tree further confirmed species differentiation with strong bootstrap values. These findings underscore the importance of accurate species identification for prosecuting wildlife crimes and formulating targeted conservation strategies. Despite limitations, including sample size and reliance on existing reference data, the study emphasizes the crucial role of DNA forensics in combating illegal wildlife trade and highlights the need for improved genetic databases. Practical implications include establishing protocols for sample collection, DNA forensic training for law enforcement, and fostering collaboration between forensic laboratories and conservation organizations. Integrating these forensic techniques supports broader conservation goals by enabling targeted enforcement, effective prosecution, and informed conservation planning through accurate subspecies identification.

Unraveling the genomic diversity and admixture history of captive tigers in the United States

Genomic studies of endangered species have primarily focused on describing diversity patterns and resolving phylogenetic relationships, with the overarching goal of informing conservation efforts. However, few studies have investigated genomic diversity housed in captive populations. For tigers (Panthera tigris), captive individuals vastly outnumber those in the wild, but their diversity remains largely unexplored. Privately owned captive tiger populations have remained an enigma in the conservation community, with some believing that these individuals are severely inbred, while others believe they may be a source of now-extinct diversity. Here, we present a large-scale genetic study of the private (non-zoo) captive tiger population in the United States, also known as "Generic" tigers. We find that the Generic tiger population has an admixture fingerprint comprising all six extant wild tiger subspecies. Of the 138 Generic individuals sequenced for the purpose of this study, no individual had ancestry from only one subspecies. We show that the Generic tiger population has a comparable amount of genetic diversity relative to most wild subspecies, few private variants, and fewer deleterious mutations. We observe inbreeding coefficients similar to wild populations, although there are some individuals within both the Generic and wild populations that are substantially inbred. Additionally, we develop a reference panel for tigers that can be used with imputation to accurately distinguish individuals and assign ancestry with ultralow coverage (0.25×) data. By providing a cost-effective alternative to whole-genome sequencing (WGS), the reference panel provides a resource to assist in tiger conservation efforts for both ex- and in situ populations.

The tide of tiger poaching in India is rising! An investigation of the intertwined facts with a focus on conservation

Poaching and illegal trafficking are major threats to biodiversity, especially when endangered felids are concerned. Tigers are iconic animals, and there is huge demand for their body parts both in the national and international illegal markets. India forms the largest tiger conservation unit in the world and poaching is at its peak even though there are stringent laws and strict enforcement. In the present study, we analytically estimated the tiger seizure cases in India from 2001-2021 using newspaper archives as the main source of data. The data was geo-referenced to understand the details of seizure, demand, and locality. We statistically correlated the seizure rate with the density of tigers, tiger reserves, and various other socio-economic factors. Our result shows that skin, claws, bones, and teeth have more demand, with nails and teeth being the most preferred in local markets. The bones, flesh, and other parts were mostly seized in the border states of the north and eastern states. The intensity of seizures is very high in the states of Maharashtra, Karnataka, Tamil Nadu, and Assam. From our analysis, we predict four trade routes for the export of the seized parts: the Nepal-Bhutan border, Assam border, the Brahmaputra, and the Mumbai port. This corresponds to the five tiger conservation blocks in India, and we observed the seizure rate is high near the Western Ghats region, which has not yet been noticed. Apart from the seizure, we are unconcerned with the seizure's origin or the local trading routes. The study demonstrates the importance of identifying the source population using DNA methods and carefully enforcing the rules in area of poaching. We assert that current approaches are incapable of resolving the issue and that a more precise and effective forensic procedure capable of resolving the issue at the minute local level is critical for precisely tracing trade channels.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10708-022-10633-4.

A systematic scoping review of tiger conservation in the Terai Arc Landscape and Himalayas

In the last decade the tiger Panthera tigris population in the Terai Arc Landscape and Himalayas has increased, while populations in other countries have remained below their conservation targets. Although there has been some research on tiger conservation in the Terai Arc Landscape and the Himalayas, scientists and managers have not catalogued and characterized tiger research in the region, with empirical findings scattered among disparate document types, journals and countries. Without a review of the tiger research in the Terai Arc Landscape and Himalayan region, it is difficult to analyse or change conservation policies, develop adaptation strategies, prioritize research, allocate resources or develop conservation strategies potentially employable elsewhere. We therefore conducted a systematic scoping review to identify focal research areas, the spatial and temporal distribution of study sites, general publication trends, the extent of empirical studies, and gaps in tiger conservation research in this region (which spans Bhutan, India and Nepal). Since 2000, 216 studies have been published on issues associated with tiger conservation in the Terai Arc Landscape and Himalayas, with an increasing number over time. Most empirical studies have focused on tiger habitat, ecology and conflicts in protected areas in the region's foothills. There are research gaps in high-altitude landscapes, social science investigations, conservation economics, and policy and institutional analyses.

Uncovering the nuances of criminal motivations and modus operandi in the Russian Far East: A wildlife crime case study

Wildlife crime is a relatively new line of inquiry for scholars of criminology; traditionally it has been the purview of conservation science. However, as conservation is fundamentally about changing human behavior, the value of a criminological perspective to understand both the theoretical underpinnings of wildlife crime commission and practical mitigation strategies is being increasingly recognized. Based on an ethnographic case study on the poaching and trafficking of Amur tigers in the Russian Far East, this article reflects upon the use of criminological ethnographic methods to understand the complexity and subtleties of wildlife crime by directly interviewing the poachers, middlemen, buyers, and smugglers involved. The article seeks transparency on how qualitative methods can be successfully employed to engage in fieldwork with active criminals in peripheral settings.

Making a Tiger's Day: Free-Operant Assessment and Environmental Enrichment to Improve the Daily Lives of Captive Bengal Tigers (Panthera tigris tigris)

There are more captive tigers in the United States than there are wild tigers in the entire world. Many animals under human care engage in problem behaviors such as excessive grooming and aggression, although the origin of these behaviors is typically unknown. Environmental enrichment may mitigate these issues in captive animals of all kinds. In order to individualize enrichment experiences, the current study used a free-operant assessment procedure to establish a menu of most preferred play items and scents among 7 Bengal tigers (Panthera tigris tigris) housed at a sanctuary in southwest Missouri. Each tiger was tested 3 times with scents (cinnamon and Calvin Klein Obsession perfume) and play items (boxes, balls, leaves, and pumpkins). The importance of rigorous assessment of presumed reinforcers among captive wild animals, as well as the difficulty of effectively assessing tigers while ensuring the safety of both the participants and researchers, is discussed.

Past, present and future contributions of evolutionary biology to wildlife forensics, management and conservation

Successfully implementing fundamental concepts into concrete applications is challenging in any given field. It requires communication, collaboration and shared will between researchers and practitioners. We argue that evolutionary biology, through research work linked to conservation, management and forensics, had a significant impact on wildlife agencies and department practices, where new frameworks and applications have been implemented over the last decades. The Quebec government's Wildlife Department (MFFP: Ministère des Forêts, de la Faune et des Parcs) has been proactive in reducing the “research–implementation” gap, thanks to prolific collaborations with many academic researchers. Among these associations, our department's outstanding partnership with Dr. Louis Bernatchez yielded significant contributions to harvest management, stocking programmes, definition of conservation units, recovery of threatened species, management of invasive species and forensic applications. We discuss key evolutionary biology concepts and resulting concrete examples of their successful implementation that derives directly or indirectly from this successful partnership. While old and new threats to wildlife are bringing new challenges, we expect recent developments in eDNA and genomics to provide innovative solutions as long as the research–implementation bridge remains open.