Specific mechanism of Acidithiobacillus caldus extracellular polymeric substances in the bioleaching of copper-bearing sulfide ore

Understanding a Core Pilin of the Type IVa Pili of Acidithiobacillus thiooxidans, PilV

Pilins are protein subunits of pili. The pilins of type IV pili (T4P) in pathogenic bacteria are well characterized, but anything is known about the T4P proteins in acidophilic chemolithoautotrophic microorganisms such as the genus Acidithiobacillus. The interest in T4P of A. thiooxidans is because of their possible role in cell recruitment and bacterial aggregation on the surface of minerals during biooxidation of sulfide minerals. In this study we present a successful ad hoc methodology for the heterologous expression and purification of extracellular proteins such as the minor pilin PilV of the T4P of A. thiooxidans, a pilin exposed to extreme conditions of acidity and high oxidation-reduction potentials, and that interact with metal sulfides in an environment rich in dissolved minerals. Once obtained, the model structure of A. thiooxidans PilV revealed the core basic architecture of T4P pilins. Because of the acidophilic condition, we carried out in silico characterization of the protonation status of acidic and basic residues of PilV in order to calculate the ionization state at specific pH values and evaluated their pH stability. Further biophysical characterization was done using UV-visible and fluorescence spectroscopy and the results showed that PilV remains soluble and stable even after exposure to significant changes of pH. PilV has a unique amino acid composition that exhibits acid stability, with significant biotechnology implications such as biooxidation of sulfide minerals. The biophysics profiles of PilV open new paradigms about resilient proteins and stimulate the study of other pilins from extremophiles.

Contrasting response strategies of sulfate-reducing bacteria in a microbial consortium to As3+ stress under anaerobic and aerobic environments

The sulfate-reducing efficiency of sulfate-reducing bacteria (SRB) is strongly influenced by the presence of oxygen, but little is known about the oxygen tolerance mechanism of SRB and the effect of oxygen on the metalliferous immobilization by SRB. The performance evaluation, identification of bioprecipitates, and microbial and metabolic process analyses were used here to investigate the As3+ immobilization mechanisms and survival strategies of the SRB1 consortium under different oxygen-containing environments. Results indicated that the sulfate reduction efficiency was significantly decreased under aerobic (47.37%) compared with anaerobic conditions (66.72%). SEM analysis showed that under anaerobic and aerobic conditions, the morphologies of mineral particles were different, whereas XRD and XPS analyses showed that the most of As3+ bioprecipitates under both conditions were arsenic minerals such as AsS and As4S4. The abundances of Clostridium_sensu_stricto_1, Desulfovibrio, and Thiomonas anaerobic bacteria were significantly higher under anaerobic than aerobic conditions, whereas the aerobic Pseudomonas showed an opposite trend. Network analysis revealed that Desulfovibrio was positively correlated with Pseudomonas. Metabolic process analysis confirmed that under aerobic conditions the SRB1 consortium generated additional extracellular polymeric substances (rich in functionalities such as Fe-O, SO, CO, and -OH) and the anti-oxidative enzyme superoxide dismutase to resist As3+ stress and oxygen toxicity. New insights are provided here into the oxygen tolerance and detoxification mechanism of SRB and provide a basis for the future remediation of heavy metal(loid)-contaminated environments.

An efficient approach for enhancement of gold and silver bioleaching from spent telecommunication printed circuit boards using cyanogenic bacteria: Prevention of biofilm formation

Environmentally friendly bioleaching of gold and silver from electronic waste using cyanogenic bacteria has emerged as a promising approach. In the process of cyanide bioleaching, cyanide ions produced by cyanogenic bacteria form complexes (such as AuCN and AgCN) with metals in the waste structure and lead to their dissolution. The recovery rate of these valuable elements during bioleaching is influenced by extracellular polymeric substances (EPS). For the first time, this study presents an investigation into the role of EPS from Pseudomonas atacamensis in the bioleaching of gold and silver from spent telecommunication printed circuit boards (STPCBs). The experimental results demonstrate that, after 6 days of bioleaching, gold and silver recoveries reached 22% and 36.2%, respectively. Complementary analyses employing FE-SEM and attachment tests shed light on the interactions between EPS, bacterial attachment to particle surfaces, and biofilm development stages during gold and silver bioleaching. Notably, the most significant bacterial attachment occurred on the fourth day of bioleaching. Zeta potential tests conducted on bacteria and EPS provided insights into the potential absorption of soluble cations such as Au+ and Ag+ by EPS. Furthermore, 250 mg/L polyvinylpyrrolidone (PVP) effectively removed EPS from the particle surfaces, improving gold and silver recovery rates, reaching 26% and 43.2%, respectively. These findings highlight the importance of understanding the role of EPS in bioleaching processes and offer insights into enhancing gold and silver recovery from electronic waste.

Bioleaching performance of vanadium-bearing smelting ash by Acidithiobacillus ferrooxidans for vanadium recovery

The bioleaching process is widely used in the treatment of ores or solid wastes, but little is known about its application in the treatment of vanadium-bearing smelting ash. This study investigated bioleaching of smelting ash with Acidithiobacillus ferrooxidans. The vanadium-bearing smelting ash was first treated with 0.1 M acetate buffer and then leached in the culture of Acidithiobacillus ferrooxidans. Comparison between one-step and two-step leaching process indicated that microbial metabolites could contribute to the bioleaching. The Acidithiobacillus ferrooxidans demonstrated a high vanadium leaching potential, solubilizing 41.9% of vanadium from the smelting ash. The optimal leaching condition was determined, which was 1% pulp density, 10% inoculum volume, an initial pH of 1.8, and 3 Fe²⁺g/L. The compositional analysis showed that the fraction of reducible, oxidizable, and acid-soluble was transferred into the leaching liquor. Therefore, as the alternative to the chemical/physical process, an efficient bioleaching process was proposed to enhance the recovery of vanadium from the vanadium-bearing smelting ash.

Multi-Objective Optimization of Copper Bioleaching: Comparative Study of Pure and Co-Cultured Cultivation

Background

Bioleaching is a practical method to recover metals from low-grade mineral sulfides. The most frequent bacteria involved in the bioleaching of metals from ores are Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans. Experimental design is a method through which the optimum activity condition will be obtained, avoiding numerous trials and errors.

Objectives

This study aimed to optimize the bioleaching condition of two indigenous iron- and sulfur-oxidizing bacteria from the Meydouk mine, Iran, and evaluate their function in a semi-pilot operation in pure and mixed cultures.

Material and Methods

After treatment with sulfuric acid, the bacterial DNA was extracted, and further 16S rRNA was sequenced to characterize the bacterial species. The cultivation condition of these bacteria was optimized using Design-expert (6.1.1 version) software. The copper recovery rate and the differentiation in the ORP rate in the percolation columns were also investigated. These strains were isolated from the Meydouk mine for the first time.

Results

16S rRNA analysis revealed that both bacteria belong to the Acidithiobacillus genus. The factors with the most significant impact on Acidithiobacillus ferrooxidans with their optimum level were temperature=35 °C, pH=2.5, and initial FeSO₄ concentration=25 g.L^-1. Also, initial sulfur concentration had the most significant impact on Acidithiobacillus thiooxidans with the optimum level of 35 g.L^-1. Moreover, the mixed culture determined higher bioleaching efficiency compared with the case of employing the pure cultures.

Conclusions

Utilizing a mixture of both bacteria, Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans elevated the Cu recovery rate due to the synergetic function of the strains. Also, introducing an initial dosage of sulfur and pre-acidification could elevate metal recovery efficiency.

Influence of surfactant on the permeability at different positions of a leaching column

To solve the problems of poor permeability and low leaching rate in ore heap leaching, solid surface physical chemistry, seepage mechanics theory for porous media, CT scanning and SEM were used to carry out column leaching tests with a homemade segmented removable plexiglass column; the variation law for the permeability coefficients of each segment of the leaching column before and after leaching was analyzed. The experimental results showed that there was little difference in the permeability coefficient of ore at different heights before leaching. After leaching, the permeability coefficients were unevenly distributed along the column height, and the lowest value was located at the bottom of the leaching column. The addition of surfactant provided an obvious improvement in the permeability of the leaching column. The permeability coefficient at the bottom of the leaching column was 6% higher than that of the control group. At the same time, the addition of surfactant increased the leaching rate of ore by nearly 10%. A theoretical analysis showed that the surfactant improved the permeability of ore heaps mainly by preventing physical blockage by fine particles and inhibiting deposition of chemical products.

Enhanced metal bioleaching mechanisms of extracellular polymeric substance for obsolete LiNixCoyMn1-x-yO2 at high pulp density

Harmful chemicals present in electric vehicle Li-ion batteries (EV LIBs) can limit the pulp density of bioleaching processes using Acidithiobacillus sp. to 1.0% (w/v) or lower. The strong enhancing mechanisms of extracellular polymeric substances (EPS) on the bioleaching of metals from spent EV LIBs at high pulp density (4% w/v) were studied using bio-chemical, spectroscopic, surface structure imaging and bioleaching kinetic methods. Results demonstrated that the added EPS significantly improved bioleaching efficiency of Ni, Co and Mn improved by 42%, 40% and 44%, respectively. EPS addition boosted the growth of cells under adverse conditions to produce more biogenic H⁺ while Fe³⁺ and Fe²⁺ were adsorbed by the biopolymer. This increased Li extraction by acid dissolution and concentrated the Fe³⁺/Fe²⁺ cycle via non-contact mechanisms for the subsequent contact bioleaching of Ni, CO and Mn at the EV LIB-bacteria interface. During the leaching process, added EPS improved adhesion of the bacterial cells to the EV LIBs, and the resultant strong interfacial reactions promoted bioleaching of the target metals. Hence, a combination of non-contact and contact mechanisms initiated by the addition of EPS enhanced the bioleaching of spent EV LIBs at high pulp density.

A pathway of the generation of acid mine drainage and release of arsenic in the bioleaching of orpiment

Arsenic in acid mine drainage (AMD) is commonly associated with the bioleaching of arsenic sulfide minerals. Orpiment is iron free and one of the most common arsenic sulfide minerals, but no studies are involved with the relationship between the iron free bioleaching of orpiment and the generation of arsenic-containing AMD. In this study, the iron free bioleaching experiments with Acidithiobacillus thiooxidans (T.t) or Acidithiobacillus caldus (A.c) were carried out. In the experiments with T.t, the pH value decreased with time, and the leached arsenic increased significantly. Meanwhile, the density of planktonic bacteria increased gradually, suggesting that T.t survived in the orpiment pulp. However, in the experiments with initial pH of 1, pH changed little and arsenic was nearly not leached, implying that the bioleaching of orpiment can be inhibited when the initial pH was too low. The XRD patterns and the TFESEM-EDS analyses showed that no elemental sulfur was detected on the orpiment surface. It was supposed that the sulfur was converted to sulfuric acid in the bioleaching process. The CFESEM images showed that no corrosion pits were formed though a few cells adhered to the orpiment surface, and the TEM images showed that no extracellular polymeric substances (EPS) were excreted by the attached cells on the orpiment particles. In the experiments with A.c, similar results were obtained. It is inferred that the bioleaching of orpiment under iron deficient conditions in mining areas generates arsenic-containing AMD, but can be inhibited when the initial pH is too low.

Bioleaching of Typical Electronic Waste-Printed Circuit Boards (WPCBs): A Short Review

The rapid pace of innovations and the frequency of replacement of electrical and electronic equipment has made waste printed circuit boards (WPCB) one of the fastest growing waste streams. The frequency of replacement of equipment can be caused by a limited time of proper functioning and increasing malfunctions. Resource utilization of WPCBs have become some of the most profitable companies in the recycling industry. To facilitate WPCB recycling, several advanced technologies such as pyrometallurgy, hydrometallurgy and biometallurgy have been developed. Bioleaching uses naturally occurring microorganisms and their metabolic products to recover valuable metals, which is a promising technology due to its cost-effectiveness, environmental friendliness, and sustainability. However, there is sparse comprehensive research on WPCB bioleaching. Therefore, in this work, a short review was conducted from the perspective of potential microorganisms, bioleaching mechanisms and parameter optimization. Perspectives on future research directions are also discussed.

Insights into the polysaccharides and proteins production from Penicillium citrinum during bioleaching of spent coin cells

The essential role of polysaccharides and proteins of extracellular polymeric substances (EPS) has been well known in the bioleaching process. However, there is no information on the role of these compositions in the bioleaching of spent coin cells (SCCs). This study investigated protein and polysaccharide production as biological macromolecules during the bioleaching of SCCs at various pulp densities using adapted Penicillium citrinum. The adaptation improved the tolerance index of fungi for the bioleaching up to a pulp density of 30 g/L. The EPS analysis indicated that loosely bound EPS (LB-EPS) contained a high concentration of polysaccharides. Instead, the most protein content was concentrated at tightly bound EPS (TB-EPS). Both protein and polysaccharide keep growing up to 20 g/L of pulp density during the entire period of bioleaching, and the maximum binding rate of Mn and Li to EPS was 43% and 15%, respectively. Pearson correlation indicated the positive correlation of the protein and the polysaccharides content on bioleaching efficiencies. From the FTIR spectroscopy, the principal functional groups on Mn and Li binding were OH and carboxyl. The FE-SEM analysis revealed the deformation of EPS at 30 g/L of pulp density, which suggested the toxic effect of this pulp density.

Bioleaching of rare earths elements from phosphate rock using Acidothiobacillus ferrooxidans

Phosphate rock containing rare earth elements (REEs) is considered one of the most promising potential secondary sources of REEs, as evidenced by large tonnages of phosphate rock mined annually. The bioleaching of REEs from phosphate rock using A. ferrooxidans was done for the first time in this study, and it was found to be greater than abiotic leaching and was more environmentally friendly. The result showed that the total leaching rate of REEs in phosphate rock was 28.46% under the condition of 1% pulp concentration and pH=2, and the leaching rates of four key rare earths, Y, La, Ce, and Nd, were 35.7%, 37.03%, 27.92%, and 32.53%, respectively. The bioleaching process was found to be accomplished by bacterial contact and Fe²⁺ oxidation. The blank control group which contained Fe²⁺ was able to leach some of the rare earths, indicating that the oxidation of Fe²⁺ may affect the leaching of rare earths. X-Ray Diffraction (XRD)analysis showed that the minerals were significantly altered and the intensity of the diffraction peaks of dolomite and apatite decreased significantly after microbial action compared to the blank control, and it was observed that bacteria adhere to the mineral surface and the minerals become smooth and angular after bioleaching by Scanning electron microscope (SEM), indicating that bacteria have a further effect on the rock based on Fe²⁺ oxidation.Finally.Fourier Transform infrared spectroscopy (FTIR) and three-dimensional excitation-emission matrix (3DEEM) fluorescence spectra analysis showed that extracellular polymeric substances (EPS) participate in the bioleaching process.

Effects of Extracellular Polymeric Substances and Specific Compositions on Enhancement of Copper Bioleaching Efficiency from Waste Printed Circuit Boards

Bioleaching has been proven to be an efficient and environment-friendly method for processing metalliferous ore and waste printed circuit boards (PCBs), a type of urban mine waste. Extracellular polymeric substances (EPS) play a major role in the attachment of bacteria to the surface of sulfide minerals. However, there are few reports on the effects of EPS components on the bioleaching of metals from PCBs. In this study, synthetic EPS were used to investigate the effects of the composition of exo-polymers on the bioleaching of copper from waste PCBs, including the process efficiency. The copper extraction rate in bioleaching assays with synthetic EPS was 11.7% greater than in those without synthetic EPS. Moreover, the composition of EPS was proven to be a crucial factor affecting the efficiency of copper bioleaching, with EPS containing arginine yielding the highest recovery (95.2% copper). Under the condition of 0.5 g/L synthetic EPS added at the early stage of log phase, the copper leaching efficiency from waste PCBs was highly improved. This study provides important insights into how to analyze the working mechanisms of EPS for a better recovery efficiency.

Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle

Extreme acidophiles thrive in environments rich in protons (pH values <3) and often high levels of dissolved heavy metals. They are distributed across the three domains of the Tree of Life including members of the Proteobacteria. The Acidithiobacillia class is formed by the neutrophilic genus Thermithiobacillus along with the extremely acidophilic genera Fervidacidithiobacillus, Igneacidithiobacillus, Ambacidithiobacillus, and Acidithiobacillus. Phylogenomic reconstruction revealed a division in the Acidithiobacillia class correlating with the different pH optima that suggested that the acidophilic genera evolved from an ancestral neutrophile within the Acidithiobacillia. Genes and mechanisms denominated as "first line of defense" were key to explaining the Acidithiobacillia acidophilic lifestyle including preventing proton influx that allows the cell to maintain a near-neutral cytoplasmic pH and differ from the neutrophilic Acidithiobacillia ancestors that lacked these systems. Additional differences between the neutrophilic and acidophilic Acidithiobacillia included the higher number of gene copies in the acidophilic genera coding for "second line of defense" systems that neutralize and/or expel protons from cell. Gain of genes such as hopanoid biosynthesis involved in membrane stabilization at low pH and the functional redundancy for generating an internal positive membrane potential revealed the transition from neutrophilic properties to a new acidophilic lifestyle by shaping the Acidithiobacillaceae genomic structure. The presence of a pool of accessory genes with functional redundancy provides the opportunity to "hedge bet" in rapidly changing acidic environments. Although a core of mechanisms for acid resistance was inherited vertically from an inferred neutrophilic ancestor, the majority of mechanisms, especially those potentially involved in resistance to extremely low pH, were obtained from other extreme acidophiles by horizontal gene transfer (HGT) events.

Investigation on bio-desilication process of fly ash based on a self-screened strain of Bacillus amyloliquefaciens and its metabolites

Bio-desilication of fly ash containing a large amount of crystalline and amorphous silicate compound by silicate bacteria had the advantages of energy-saving, environment-friendly, and controllable cost. In this study, a bacteria strain with desilication ability on fly ash was isolated from the soil and identified as Bacillus amyloliquefaciens by 16sRNA and named ZGW-12. Through the bio-leaching treatment of fly ash by ZGW-12, it was found that the concentration of Si was 306.26 mg/L and the concentration of Al³⁺ was 0.5 mg/L in the pulp. The mechanism of bio-leaching using ZGW-12 was investigated by XRD, HPLC, SEM, and FTIR. The organic acid and amino acid in the bacteria culture medium and the pulp were detected, and it was found that the content of the acidic metabolites in the pulp was much larger than that of the bacteria culture medium. The ore sample particles adsorbed a large number of bacteria cells and took place obvious corrosion. The surface of the ore sample undergone hydroxylation reaction, and the diffraction peak of the silicate crystal compound was unchanged. ZGW-12 exhibits good performance in retaining aluminum and extracting silicon aspect. AVAILABILITY OF DATA AND MATERIAL (DATA TRANSPARENCY): All data were true and valid.

Generation behavior of extracellular polymeric substances and its correlation with extraction efficiency of valuable metals and change of process parameters during bioleaching of spent petroleum catalyst

The vital functions of extracellular polymeric substances (EPS) have been well recognized in bioleaching of sulfide ores. However, no report is available about the role of EPS in bioleaching of spent catalyst. To completely and deeply understand the functions of EPS in bioleaching of spent catalyst, the generation behavior of EPS at various pulp densities during bioleaching was characterized by three-dimensional excitation-emission matrix (3DEEM), and its relevance with bioleaching performance and process parameters were analyzed using mathematical means. The results showed that the EPS contain humus-like substances as main component (>70%) and protein-like substances as minor component (<30%). Both total EPS and humus-like substances mainly keep growing over the whole duration of bioleaching at low pulp density of 5.0% or lower; whereas total EPS and humus-like fraction keep declining at high pulp density of 7.5% or higher. Among the total EPS and its components, humus-like substances only have a positive significant correlation with bioleaching efficiencies of both Co and Mo and affect bioleaching process more greatly due to greater correlation coefficient. Biofilm appears at the spent catalyst surface under 2.5% of pulp density mediated by EPS while no biofilm occurs at 10% of pulp density due to shortage of EPS, accounting for the great difference in bioleaching efficiencies between high and low pulp densities which are 48.3% for Mo and 50.0% for Co at 10% of pulp density as well as 75.9% for Mo and 78.8% for Co at 2.5% of pulp density, respectively.

Simultaneously enhance iron/sulfur metabolism in column bioleaching of chalcocite by pyrite and sulfur oxidizers based on joint utilization of waste resource

In chalcocite (Cu₂S) bioleaching, the lack of iron metabolism is a key restricting factor. As the most common sulfide mineral, pyrite (FeS₂) can release Fe(Ⅱ) and compensate for the iron metabolism deficiency in chalcocite bioleaching. The bioleaching of chalcocite in an imitated industrial system was improved by enhancing the iron-sulfur metabolism simultaneously using pyrite and sulfur oxidizers based on the joint utilization of waste resources, while the bioleaching performance and community structure in the leachate were systematically investigated. Due to the active sulfur/iron metabolism, the pH reached 1.2, and Fe³⁺ was increased by 77.78%, while the biomass of planktonic cells was improved to 2.19 × 10⁷ cells/mL. Fourier transform infrared reflection (FTIR) and X-ray diffraction (XRD) analysis results showed that more iron-sulfur crystals were produced due to more active iron-sulfur metabolism. Scanning electron microscopy (SEM) revealed that many derivative particles and corrosion marks appeared on the surface of the ore, implying that the mineral-microbe interaction was strengthened. Confocal laser scanning microscopy (CLSM) showed the accumulation of cells and extracellular polymeric substances (EPS) on the ore surface, indicating a stronger contact leaching mechanism. Furthermore, the community structure and canonical correspondence analysis (CCA) demonstrated that the introduction of sulfur-oxidizing bacteria and pyrite could maintain the diversity of dominant leaching microorganisms at a high level. Sulfobacillus (27.75%) and Leptospirllillum (20.26%) were the dominant sulfur-oxidizing and iron-oxidizing bacteria during the bioleaching process. With the accumulation of multiple positive effects, the copper ion leaching rate was improved by 44.8%. In general, this new type of multiple intervention strategy can provide an important guide for the bioleaching of low-grade ores.

Hazardous minerals mining: Challenges and solutions

Minerals are valuable resources gifted to man from the Mother Earth and quite often they need to be dug out from deep down with much effort to utilize them in many of our anthropogenic activities. The fascinating nature, colours as well as the physicochemical properties of minerals has extended their prospective value in the synthesis of various household and industrial products. However, knowledge of the mostly explored minerals, associated products, and their hazardous nature becomes relevant to its prevalence in our daily life. The harmful effects of some minerals are mostly evident from its site of occurrence, process of mining, post mining wastes left over and even in finished products. The current review focuses to evaluate the hazardous nature of minerals, cautions associated with its mining, drastic effects on human health, and ecosystem as an eye-opener to us. Finally, the effective remedies that could be implemented in the exploration of minerals are also discussed to the best of our knowledge. Bioleaching methods of rare earth elements and copper have been discussed briefly to explain the pros and cons of biological methods over conventional chemical leaching methods.

Anaerobic digestion of sludge filtrate using anaerobic baffled reactor assisted by symbionts of short chain fatty acid-oxidation syntrophs and exoelectrogens: Pilot-scale verification

The growing amount of sewage sludge from wastewater treatment plant is an emerging challenge in China. The efficient anaerobic digestion of sludge filtrate generated from hydrothermally pretreated sewage sludge can promote the disposal of sewage sludge. Herein, a pilot-scale anaerobic baffled reactor (ABR) assisted by symbionts of short chain fatty acid-oxidation syntrophs (SFAS) and exoelectrogens was developed to improve its stability and efficiency for filtrate treatment. The results demonstrated that the symbionts of exoelectrogens and SFAS, which were enriched by introduction of electrodes in the ABR system, promoted the degradation of butyric, propionic and acetic acids. Therefore, the COD removal efficiency increased from 74.1% to 86.6% and the methane content increased from 81.5% to 92.2% with methane production rising from 241 to 282 mL/g COD_removed. Furthermore, the economic evaluation indicated that the energy consumption of electrodes was 0.600 kWh/m³ of sludge filtrate, the net energy profited from increased methane was 2.344 kWh/m³ of sludge filtrate. These results confirmed that the ABR system assisted by symbionts of SFAS and exoelectrogens was feasible for treatment of sludge filtrate in terms of both technical and economic level through pilot-scale verification.