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Holthuijzen WA, Flint EN, Green SJ, Plissner JH, Simberloff D, Sweeney D, Wolf CA, Jones HP. An invasive appetite: Combining molecular and stable isotope analyses to reveal the diet of introduced house mice (Mus musculus) on a small, subtropical island. PLoS One 2023; 18:e0293092. [PMID: 37856477 PMCID: PMC10586637 DOI: 10.1371/journal.pone.0293092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 10/04/2023] [Indexed: 10/21/2023] Open
Abstract
House mice (Mus musculus) pose a conservation threat on islands, where they adversely affect native species' distributions, densities, and persistence. On Sand Island of Kuaihelani, mice recently began to depredate nesting adult mōlī (Laysan Albatross, Phoebastria immutabilis). Efforts are underway to eradicate mice from Sand Island, but knowledge of mouse diet is needed to predict ecosystem response and recovery following mouse removal. We used next-generation sequencing to identify what mice eat on Sand Island, followed by stable isotope analysis to estimate the proportions contributed by taxa to mouse diet. We collected paired fecal and hair samples from 318 mice between April 2018 to May 2019; mice were trapped approximately every eight weeks among four distinct habitat types to provide insight into temporal and spatial variation. Sand Island's mice mainly consume arthropods, with nearly equal (but substantially smaller) contributions of C3 plants, C4 plants, and mōlī. Although seabird tissue is a small portion of mouse diet, mice consume many detrital-feeding arthropods in and around seabird carcasses, such as isopods, flesh flies, ants, and cockroaches. Additionally, most arthropods and plants eaten by mice are non-native. Mouse diet composition differs among habitat types but changes minimally throughout the year, indicating that mice are not necessarily limited by food source availability or accessibility. Eradication of house mice may benefit seabirds on Sand Island (by removing a terrestrial, non-native predator), but it is unclear how arthropod and plant communities may respond and change. Non-native and invasive arthropods and plants previously consumed (and possibly suppressed) by mice may be released post-eradication, which could prevent recovery of native taxa. Comprehensive knowledge of target species' diet is a critical component of eradication planning. Dietary information should be used both to identify and to monitor which taxa may respond most strongly to invasive species removal and to assess if proactive, pre-eradication management activities are warranted.
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Affiliation(s)
- Wieteke A. Holthuijzen
- Department of Ecology & Evolutionary Biology, University of Tennessee at Knoxville, Knoxville, Tennessee, United States of America
| | - Elizabeth N. Flint
- Marine National Monuments of the Pacific, U.S. Fish and Wildlife Service, Honolulu, Hawaiʻi, United States of America
| | - Stefan J. Green
- Genomics and Microbiome Core Facility, Rush University Medical Center, Chicago, Illinois, United States of America
| | - Jonathan H. Plissner
- Midway Atoll National Wildlife Refuge, U.S. Fish and Wildlife Service, Waipahu, Hawaiʻi, United States of America
| | - Daniel Simberloff
- Department of Ecology & Evolutionary Biology, University of Tennessee at Knoxville, Knoxville, Tennessee, United States of America
| | - Dagmar Sweeney
- Institute for Health Research & Policy, University of Illinois at Chicago, Chicago, Illinois, United States of America
| | - Coral A. Wolf
- Island Conservation, Santa Cruz, California, United States of America
| | - Holly P. Jones
- Department of Biological Sciences, Northern Illinois University, DeKalb, Illinois, United States of America
- Institute for the Study of the Environment, Sustainability, and Energy, Northern Illinois University, DeKalb, Illinois, United States of America
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Hoenig BD, Trevelline BK, Kautz A, Latta SC, Porter BA. Two is better than one: Coupling DNA metabarcoding and stable isotope analysis improves dietary characterizations for a riparian-obligate, migratory songbird. Mol Ecol 2022; 31:5635-5648. [PMID: 36089910 DOI: 10.1111/mec.16688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Revised: 09/01/2022] [Accepted: 09/05/2022] [Indexed: 12/24/2022]
Abstract
While an increasing number of studies are adopting molecular and chemical methods for dietary characterization, these studies often employ only one of these laboratory-based techniques; this approach may yield an incomplete, or even biased, understanding of diet due to each method's inherent limitations. To explore the utility of coupling molecular and chemical techniques for dietary characterizations, we applied DNA metabarcoding alongside stable isotope analysis to characterize the dietary niche of breeding Louisiana waterthrush (Parkesia motacilla), a migratory songbird hypothesized to preferentially provision its offspring with pollution-intolerant, aquatic arthropod prey. While DNA metabarcoding was unable to determine if waterthrush provision aquatic and terrestrial prey in different abundances, we found that specific aquatic taxa were more likely to be detected in successive seasons than their terrestrial counterparts, thus supporting the aquatic specialization hypothesis. Our isotopic analysis added greater context to this hypothesis by concluding that breeding waterthrush provisioned Ephemeroptera and Plecoptera, two pollution-intolerant, aquatic orders, in higher quantities than other prey groups, and expanded their functional trophic niche when such prey were not abundantly provisioned. Finally, we found that the dietary characterizations from each approach were often uncorrelated, indicating that the results gleaned from a diet study can be particularly sensitive to the applied methodologies. Our findings contribute to a growing body of work indicating the importance of high-quality, aquatic habitats for both consumers and their pollution-intolerant prey, while also demonstrating how the application of multiple, laboratory-based techniques can provide insights not offered by either technique alone.
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Affiliation(s)
- Brandon D Hoenig
- Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania, USA
| | - Brian K Trevelline
- The Cornell Laboratory of Ornithology, Cornell University, Ithaca, New York, USA.,Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, USA
| | - Andrea Kautz
- Powdermill Nature Reserve, Carnegie Museum of Natural History, Pittsburgh, Pennsylvania, USA
| | | | - Brady A Porter
- Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania, USA
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Durso AM, Kieran TJ, Glenn TC, Mullin SJ. Comparison of Three Methods for Measuring Dietary Composition of Plains Hog-nosed Snakes. HERPETOLOGICA 2022. [DOI: 10.1655/herpetologica-d-21-00023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Andrew M. Durso
- Department of Biological Sciences, Eastern Illinois University, Charleston, IL 61920, USA
| | - Troy J. Kieran
- Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA
| | - Travis C. Glenn
- Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA
| | - Stephen J. Mullin
- Department of Biological Sciences, Eastern Illinois University, Charleston, IL 61920, USA
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Metabarcoding, direct stomach observation and stable isotope analysis reveal a highly diverse diet for the invasive green crab in Atlantic Patagonia. Biol Invasions 2021. [DOI: 10.1007/s10530-021-02659-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Balčiauskas L, Skipitytė R, Garbaras A, Stirkė V, Balčiauskienė L, Remeikis V. Stable Isotopes Reveal the Dominant Species to Have the Widest Trophic Niche of Three Syntopic Microtus Voles. Animals (Basel) 2021; 11:ani11061814. [PMID: 34204576 PMCID: PMC8233935 DOI: 10.3390/ani11061814] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 06/08/2021] [Accepted: 06/15/2021] [Indexed: 12/13/2022] Open
Abstract
Simple Summary Diets and the trophic positions of animals are fundamental issues in their ecology. We analysed the isotopic niches (as a proxy for trophic niches) of common (Microtus arvalis), field (M. agrestis), and root (M. oeconomus) voles co-occurring in orchards, berry plantations, and nearby meadows using isotopic (δ15N and δ13C) compositions from hair samples. We tested if the niche of the dominant common vole was widest, whether its width was related to the presence of other Microtus species, and whether there were intraspecific differences in average δ13C and δ15N stable isotope values. The obtained results showed relative stability in the trophic niche across the vegetative period. The isotopic niche of the common vole was the widest, exceeding the other two Microtus species by 1.6–3 times. Co-occurring vole species were separated according to δ13C (i.e., used different plants as main food), but they maintained similarity according to δ15N distribution. The effect of animal age and gender on the width of the trophic niche was strongest in root vole, which is a species that has spread across the country in the last 70 years. These results give new insights into the trophic ecology small herbivores, showing the impact of species co-occurrence. Abstract Diets and trophic positions of co-occurring animals are fundamental issues in their ecology, and these issues in syntopic rodents have been studied insufficiently. Using carbon (δ13C) and nitrogen (δ15N) stable isotope ratios from hair samples, we analysed the trophic niches of common (Microtus arvalis), field (M. agrestis), and root (M. oeconomus) voles co-occurring in orchards, berry plantations, and nearby meadows (as control habitat to orchards and plantations). We tested if the niche of the dominant common vole was the widest, whether its width depended on the presence of other vole species, and whether there were intraspecific differences. Results suggest stability in the trophic niches of all three Microtus species, as season explained only 2% of the variance. The widest trophic niche was a characteristic of the dominant common vole, the range of δ13C values exceeding the other two species by 1.6, the range of δ15N values exceeding the other two species by 1.9, and the total area of niche exceeding that of the other voles by 2.3–3 times. In the meadows and apple orchards, co-occurring vole species were separated according to δ13C (highest values in the dominant common vole), but they maintained similar δ15N values. Results give new insights into the trophic ecology small herbivores, showing the impact of species co-occurrence.
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Affiliation(s)
- Linas Balčiauskas
- Nature Research Centre, Akademijos 2, 08412 Vilnius, Lithuania; (R.S.); (V.S.); (L.B.)
- Correspondence: ; Tel.: +370-685-34141
| | - Raminta Skipitytė
- Nature Research Centre, Akademijos 2, 08412 Vilnius, Lithuania; (R.S.); (V.S.); (L.B.)
- Center for Physical Sciences and Technology, Saulėtekio av. 3, 02300 Vilnius, Lithuania; (A.G.); (V.R.)
| | - Andrius Garbaras
- Center for Physical Sciences and Technology, Saulėtekio av. 3, 02300 Vilnius, Lithuania; (A.G.); (V.R.)
| | - Vitalijus Stirkė
- Nature Research Centre, Akademijos 2, 08412 Vilnius, Lithuania; (R.S.); (V.S.); (L.B.)
| | - Laima Balčiauskienė
- Nature Research Centre, Akademijos 2, 08412 Vilnius, Lithuania; (R.S.); (V.S.); (L.B.)
| | - Vidmantas Remeikis
- Center for Physical Sciences and Technology, Saulėtekio av. 3, 02300 Vilnius, Lithuania; (A.G.); (V.R.)
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Sierra Ramírez D, Guevara G, Franco Pérez LM, van der Meijden A, González‐Gómez JC, Carlos Valenzuela‐Rojas J, Prada Quiroga CF. Deciphering the diet of a wandering spider ( Phoneutria boliviensis; Araneae: Ctenidae) by DNA metabarcoding of gut contents. Ecol Evol 2021; 11:5950-5965. [PMID: 34141195 PMCID: PMC8207164 DOI: 10.1002/ece3.7320] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 12/18/2020] [Accepted: 01/04/2021] [Indexed: 12/03/2022] Open
Abstract
Arachnids are the most abundant land predators. Despite the importance of their functional roles as predators and the necessity to understand their diet for conservation, the trophic ecology of many arachnid species has not been sufficiently studied. In the case of the wandering spider, Phoneutria boliviensis F. O. Pickard-Cambridge, 1897, only field and laboratory observational studies on their diet exist. By using a DNA metabarcoding approach, we compared the prey found in the gut content of males and females from three distant Colombian populations of P. boliviensis. By DNA metabarcoding of the cytochrome c oxidase subunit I (COI), we detected and identified 234 prey items (individual captured by the spider) belonging to 96 operational taxonomic units (OTUs), as prey for this wandering predator. Our results broaden the known diet of P. boliviensis with at least 75 prey taxa not previously registered in fieldwork or laboratory experimental trials. These results suggest that P. boliviensis feeds predominantly on invertebrates (Diptera, Lepidoptera, Coleoptera, and Orthoptera) and opportunistically on small squamates. Intersex and interpopulation differences were also observed. Assuming that prey preference does not vary between populations, these differences are likely associated with a higher local prey availability. Finally, we suggest that DNA metabarcoding can be used for evaluating subtle differences in the diet of distinct populations of P. boliviensis, particularly when predation records in the field cannot be established or quantified using direct observation.
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Affiliation(s)
- Diego Sierra Ramírez
- Grupo de Investigación Biología y Ecología de Artrópodos (BEA)Corporación HuilturNeiva, Facultad de CienciasUniversidad del TolimaIbaguéColombia
| | - Giovany Guevara
- Grupo de Investigación en Zoología (GIZ)Facultad de CienciasUniversidad del TolimaIbaguéColombia
| | | | - Arie van der Meijden
- Grupo de Investigación Biología y Ecología de Artrópodos (BEA)Corporación HuilturNeiva, Facultad de CienciasUniversidad del TolimaIbaguéColombia
- CIBIO Research Centre in Biodiversity and Genetic ResourcesInBIOUniversidade do PortoVairãoVila do CondePortugal
| | - Julio César González‐Gómez
- Grupo de Investigación Biología y Ecología de Artrópodos (BEA)Corporación HuilturNeiva, Facultad de CienciasUniversidad del TolimaIbaguéColombia
- Facultad de Ciencias Naturales y MatemáticasUniversidad de IbaguéIbaguéColombia
| | - Juan Carlos Valenzuela‐Rojas
- Grupo de Investigación Biología y Ecología de Artrópodos (BEA)Corporación HuilturNeiva, Facultad de CienciasUniversidad del TolimaIbaguéColombia
- Programa de Licenciatura en Ciencias Naturales y Educación AmbientalFacultad de EducaciónUniversidad SurcolombianaNeivaColombia
| | - Carlos Fernando Prada Quiroga
- Grupo de Investigación Biología y Ecología de Artrópodos (BEA)Corporación HuilturNeiva, Facultad de CienciasUniversidad del TolimaIbaguéColombia
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Avanesyan A, Lamp WO. Use of Molecular Gut Content Analysis to Decipher the Range of Food Plants of the Invasive Spotted Lanternfly, Lycorma delicatula. INSECTS 2020; 11:insects11040215. [PMID: 32244630 PMCID: PMC7240569 DOI: 10.3390/insects11040215] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 03/25/2020] [Accepted: 03/26/2020] [Indexed: 11/01/2022]
Abstract
Spotted lanternfly, Lycorma delicatula (Hemiptera: Fulgoridae), is an introduced highly invasive insect pest in the US that poses a significant risk to forestry and agriculture. Assessing and predicting plant usage of the lanternfly has been challenging, and little is known regarding the lanternfly nymph association with its host plants. In this study, we focused on: (a) providing a protocol for using molecular markers for food plant identification of L. delicatula; (b) determining whether the ingested plant DNA corresponds with DNA of the plants from which the lanternfly was collected; and, (c) investigating the spectrum of ingested plants. We utilized gut contents of third and fourth instar nymphs that were collected from multiple plants; we isolated ingested plant DNA and identified consumed plants. We demonstrated that (a) up to 534 bp of the rbcL gene from ingested plants can be detected in L. delicatula guts, (b) ingested plants in ~93% of the nymphs did not correspond with the plants from which the nymphs were collected, and (c) both introduced and native plants, as well as woody and non-woody plants, were ingested. This information will aid effective the monitoring and management of the lanternfly, as well as predict the lanternfly host plants with range expansion.
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