The effects of environmental parameters on the microbial activity in peat-bog lakes

Biosensing of arsenic by whole-cell bacterial bioreporter immobilized on polycaprolactone (PCL) electrospun fiber

In recent years, heavy metals derived from several anthropogenic sources have both direct and indirect detrimental effects on the health of the environment and living organisms. Whole-cell bioreporters (WCBs) that can be used to monitor the levels of heavy metals in drinking and natural spring waters are important. In this study, whole-cell arsenic bacterial bioreporters were immobilized using polycaprolactone (PCL) electrospun fibers as the support material. The aim is to determine the properties of this immobilized bioreporter system by evaluating its performance in arsenic detection. Within the scope of the study, different growth media and fiber immobilization times were tested to determine the parameters affecting the fluorescent signals emitted by the immobilized bioreporter system in the presence of two dominant forms of arsenic, namely arsenite (As(III)) and arsenate (As(V)). In addition, the sensitivity, selectivity, response time, and shelf-life of the developed bioreporter system were evaluated. As far as the literature is concerned, this is the first study to investigate the potential of using PCL-electrospun fiber-immobilized fluorescent bacterial bioreporter for arsenic detection. This study will open new avenues in environmental arsenic monitoring.

The escalating threat of human-associated infectious bacteria in surface aquatic resources: Insights into prevalence, antibiotic resistance, survival mechanisms, detection, and prevention strategies

Anthropogenic activities and climate change profoundly impact water quality, leading to a concerning increase in the prevalence and abundance of bacterial pathogens across diverse aquatic environments. This rise has resulted in a growing challenge concerning the safety of water sources, particularly surface waters and marine environments. This comprehensive review delves into the multifaceted challenges presented by bacterial pathogens, emphasizing threads to human health within ground and surface waters, including marine ecosystems. The exploration encompasses the intricate survival mechanisms employed by bacterial pathogens and the proliferation of antimicrobial resistance, largely driven by human-generated antibiotic contamination in aquatic systems. The review further addresses prevalent pathogenic bacteria, elucidating associated risk factors, exploring their eco-physiology, and discussing the production of potent toxins. The spectrum of detection techniques, ranging from conventional to cutting-edge molecular approaches, is thoroughly examined to underscore their significance in identifying and understanding waterborne bacterial pathogens. A critical aspect highlighted in this review is the imperative for real-time monitoring of biomarkers associated with waterborne bacterial pathogens. This monitoring serves as an early warning system, facilitating the swift implementation of action plans to preserve and protect global water resources. In conclusion, this comprehensive review provides fresh insights and perspectives, emphasizing the paramount importance of preserving the quality of aquatic resources to safeguard human health on a global scale.

Tracing the oomycete pathogen Saprolegnia parasitica in aquaculture and the environment

Saprolegnia parasitica causes saprolegniosis, a disease responsible for significant economic losses in aquaculture and declines of fish populations in the wild, but the knowledge of its distribution and prevalence in the environment is limited. We developed a fast, sensitive and specific S. parasitica droplet digital PCR (ddPCR) assay and demonstrated its applicability for the detection and quantification of the pathogen in environmental samples: swab DNA collected from the host (trout skin, surface of eggs) and environmental DNA extracted from water. The developed assay was used to assess how abiotic (i.e. physico-chemical parameters of the water) and biotic (health status of the host) factors influence the S. parasitica load in the environment. The pathogen load in water samples was positively correlated with some site-specific abiotic parameters such as electrical conductivity (EC) and calcium, while fluorides were negatively correlated, suggesting that physico-chemical parameters are important for determining S. parasitica load in natural waters. Furthermore, skin swabs of injured trout had significantly higher pathogen load than swabs collected from healthy fish, confirming that S. parasitica is a widespread opportunistic pathogen. Our results provide new insights into various environmental factors that influence the distribution and abundance of S. parasitica.

Structural diagnosis of benthic invertebrate communities in relation to salinity gradient in Baltic coastal lake ecosystems using biological trait analysis

This study is based on biological trait analysis (BTA), which provides a link between the distribution and biological characteristics of species. The paper investigates differences in the structure and functional diversity of benthic fauna in terms of seven biological traits (mobility, habitat, feeding type, habitat modification, body form, body size and feeding apparatus) in nine Baltic coastal lakes whose salinity ranged from 0.1 to 7.3 PSU. Mobile organisms were more common in lakes with higher salinity, while sessile and semi-mobile species preferred low-salinity or freshwater environments. There were also noticeable differences connected with feeding type: collectors and scrapers were more common in brackish lakes, and collectors were significantly dominant in freshwater and transitional ones. This indicates that Baltic coastal lakes are inhabited by similar species of benthic fauna, but that certain biological traits occur with different frequencies. We therefore identified features that may affect the functioning of coastal lakes with a relatively narrow salinity gradient (0.1–7.3 PSU). It seems to confirm the possibility of using BTA methods to determine key characteristics that are helpful for understanding the differences between aquatic ecosystems. The results may provide a basis for further research on changes in the functional diversity of lakes along the southern coast of the Baltic Sea, particularly in view of climate change, given their being small, shallow and less resilient lakes.

Variations in the Sporulation Efficiency of Pathogenic Freshwater Oomycetes in Relation to the Physico-Chemical Properties of Natural Waters

Oomycete pathogens in freshwaters, such as Saprolegnia parasitica and Aphanomyces astaci, are responsible for fish/crayfish population declines in the wild and disease outbreaks in aquaculture. Although the formation of infectious zoospores in the laboratory can be triggered by washing their mycelium with natural water samples, the physico-chemical properties of the water that might promote sporulation are still unexplored. We washed the mycelia of A. astaci and S. parasitica with a range of natural water samples and observed differences in sporulation efficiency. The results of Partial Least Squares Regression (PLS-R) multivariate analysis showed that SAC (spectral absorption coefficient measured at 254 nm), DOC (dissolved organic carbon), ammonium-N and fluoride had the strongest positive effect on sporulation of S. parasitica, while sporulation of A. astaci was not significantly correlated with any of the analyzed parameters. In agreement with this, the addition of environmentally relevant concentrations of humic acid, an important contributor to SAC and DOC, to the water induced sporulation of S. parasitica but not of A. astaci. Overall, our results point to the differences in ecological requirements of these pathogens, but also present a starting point for optimizing laboratory protocols for the induction of sporulation.

Spent coffee grounds by-products and their influence on soil C-N dynamics

SCG are a bio-waste generated in great amount worldwide which are attractive as soil amendment for their high content of organic matter and nutritive elements. Nevertheless, several studies have shown that soil application of untreated SCG has detrimental agronomic and environmental effects due to their high degradability and content of noxious compounds (phenols, caffeine, and tannins). However, SCG can be valorised, in the frame of circular economy, by extraction of energy and valuable products (carbohydrates, proteins, bio-oil, bio-diesel) and generation of solid by products (biochar, hydrochar, compost) that can be utilized as soil fertilizers and amendments. Therefore, the aim of this work was the characterization of different solid SCG by-products (as second-generation products) and their assessment as effective organic amendments. The novelty of this study is that for the first time 8 different by-products derived from the same SCG were characterized and comparatively evaluated for their impact on the C and N cycles of soil. SCG was collected and treated to generate 8 different SCG by-products (biochars produced at 270 and 400 °C, hydrochars produced at 160 and 200 °C, vermicompost, defatted SCG and biochars produced from defatted SCG at 270 and 400 °C). SCG and derived by-products were characterized for SEM micromorphology, pH and EC values, and C, N, H, O, volatile matter, fixed C, LOI, carbonates, water soluble C and N, NO₃^- and NH₄⁺ content. SCG and SCG by-products assessment as organic amendments was performed with an incubation experiment. The residues were added (2.5%) to a moist Mediterranean agricultural soil and the amended soil samples were placed in mesocosms and incubated at 20 °C for 30 days. During incubation, CO₂ and N₂O emissions were measured every 6 h by means of a gas chromatography automated system for GHG sampling and measurement. The percentage of added C remaining (C_R) in the soil was calculated by fitting the cumulative respiration of amended soil to a two-pool model. After 2, 7 and 30 days of incubation, the control and amended soils were sampled and analyzed for their content of extractable organic C, N, NO₃^- and NH₄⁺ and microbial biomass C and N. Results showed that SCG by-products presented a great variability in their properties. SCG and hydrochars presented higher contents in volatile matter and water soluble C and N, and low content of fixed C, while biochars showed an opposite behaviour. SEM images confirmed the different characteristics of the SCG by-products: the biochar presented a porous structure, honeycomb-like form, due to the loss of the more soluble compounds, while the SCG and hydrochars' pores were filled with amorphous carbonaceous materials. Consequently, soil addition of SCG by-products showed a distinct impact on C and N cycle and microbial biomass content. Addition of SCG and hydrochars generated the highest cumulative CO₂-C emissions (2103-2300 μg g^-1), the lower amount of C_R (86.8-88.6%), increased the soil extractable organic C and microbial biomass C and N and caused N immobilization. On the other hand, the addition of biochars generated lower CO₂-C emissions (542-1060 μg g^-1), higher amounts of C_R (96. 3-99.9%) and lower amounts of extractable compounds and microbial biomass C and N, generating also N immobilization, but to a lesser extent. The addition of vermicompost generated 723 μg g^-1 of CO₂-C and 98% of C_R remaining. However, this by-product did not generate N immobilization being able to act as N fertilizer. None of the residues generated N₂O emissions. The different properties of the SCG by-products and their impact on C and N cycle indicated that they can be effectively applied to soil to exert different agronomical and environmental functions.

Ammonia-oxidizing bacterial communities are affected by nitrogen fertilization and grass species in native C4 grassland soils

Background

Fertilizer addition can contribute to nitrogen (N) losses from soil by affecting microbial populations responsible for nitrification. However, the effects of N fertilization on ammonia oxidizing bacteria under C₄ perennial grasses in nutrient-poor grasslands are not well studied.

Methods

In this study, a field experiment was used to assess the effects of N fertilization rate (0, 67, and 202 kg N ha⁻¹) and grass species (switchgrass (Panicum virgatum) and big bluestem (Andropogon gerardii)) on ammonia-oxidizing bacterial (AOB) communities in C₄ grassland soils using quantitative PCR, quantitative reverse transcription-PCR, and high-throughput amplicon sequencing of amoA genes.

Results

Nitrosospira were dominant AOB in the C₄ grassland soil throughout the growing season. N fertilization rate had a stronger influence on AOB community composition than C₄ grass species. Elevated N fertilizer application increased the abundance, activity, and alpha-diversity of AOB communities as well as nitrification potential, nitrous oxide (N₂O) emission and soil acidity. The abundance and species richness of AOB were higher under switchgrass compared to big bluestem. Soil pH, nitrate, nitrification potential, and N₂O emission were significantly related to the variability in AOB community structures (p < 0.05).

Immune Response in Crayfish Is Species-Specific and Exhibits Changes along Invasion Range of a Successful Invader

Immunity is an important component of invasion success since it enables invaders' adaptation to conditions of the novel environment as they expand their range. Immune response of invaders may vary along the invasion range due to encountered parasites/microbial communities, conditions of the local environment, and ecological processes that arise during the range expansion. Here, we analyzed changes in the immune response along the invasion range of one of the most successful aquatic invaders, the signal crayfish, in the recently invaded Korana River, Croatia. We used several standard immune parameters (encapsulation response, hemocyte count, phenoloxidaze activity, and total prophenoloxidaze) to: i) compare immune response of the signal crayfish along its invasion range, and between species (comparison with co-occurring native narrow-clawed crayfish), and ii) analyze effects of specific predictors (water temperature, crayfish abundance, and body condition) on crayfish immune response changes. Immune response displayed species-specificity, differed significantly along the signal crayfish invasion range, and was mostly affected by water temperature and population abundance. Specific immune parameters showed density-dependent variation corresponding to increased investment in them during range expansion. Obtained results offer baseline insights for elucidating the role of immunocompetence in the invasion success of an invertebrate freshwater invader.

Patterns of Structural and Functional Bacterioplankton Metacommunity along a River under Anthropogenic Pressure

Bacteria, an integral part of aquatic ecosystems, are responsible for the circulation of matter and flow of energy. Since bacterioplankton rapidly responds to any natural and human-induced disturbances in the environment, it can serve as a bioindicator of these changes. Knowing factors that shape the microbial community structure may help the sustainable management of the water environment. However, the identification of environmental signals affecting the structure and function of bacterioplankton is still a challenge. The study analyses the impact of environmental variables on basic microbial parameters, which determines the effectiveness of ecological processes in rivers. Measurements of bacterioplankton abundance (BA) and extracellular enzyme activity (EEA) were based on fluorescent markers. The bacterial community structure was determined by 16S rRNA gene amplicon sequencing (Illumina). The results indicate spatial variation in bacterioplankton abundance. Temporal variation was not significant. Lipase and aminopeptidase had the highest level of activity. EEA was not correlated with bacterial abundance but was significantly correlated with temperature. Moreover, differences in lipase, α-glucosidase and β-glucosidase activity levels between spring and summer were noted. At the same time, the location of sampling site had a significant influence on aminopeptidase activity. The taxonomic analysis of bacterioplankton communities in the Brda River indicated that, although different numbers of OTUs were recorded in the studied river sections, bacterioplankton biodiversity did not change significantly along the river with distance downstream. Anthropogenically modified river sections were characterized by the dominance of Flavobacterium (Bacterioidetes) and hgcl clade (Actinobacteria) taxa, known for their ability to produce extracellular enzymes. PCoA analysis revealed that the sites located in the lower river course (urban area) had the most similar bacterial community structure (β-diversity). The study provides new insight into the changes in microbial communities along the river and emphasizes the potential impact of anthropogenization on these processes.

The impact of climate warming on the diurnal dynamics of the microbial loop: Ice cover vs. lack of ice cover on dystrophic lakes

One of the effects of warming is earlier retreat of the ice cover or a complete lack of ice cover on water bodies in the winter. However, there is still no information on how climate warming affects the 24-hour dynamics of the planktonic microbial loop in winter. The aim of this investigation was to assess the diurnal dynamics of the taxonomic composition and abundance of microbial communities in experimentally reproduced conditions (samples from under the ice, +2, +4 and +8 °C) and to analyse the relationships between components of the microbial loop in relation to physical and chemical parameters. Samples were taken in winter from three dystrophic reservoir. The biological and physicochemical parameters in the water were analysed at the start (day 0), 15 and end of the experiment (day 30) over a 24-hour cycle. The increase in temperature caused an increase in the numbers of predators (particularly testate amoebae and ciliates) and a reduction in the body size of individual populations. During the period with ice cover, marked dominance of mixotrophic testate amoeba (Hyalosphenia papilio) and ciliates (Paramecium bursaria) was observed, while the increase in temperature caused an increase in the proportion of bacterivorous ciliates (Cinetochilum margaritaceum).

Environmentally Induced Changes of Commercial Carbon Nanotubes in Aqueous Suspensions. Adaptive Behavior of Bacteria in Biofilms

The effects of environmental factors such as sunlight irradiation and the presence of humic acid (HA) on the physicochemical properties of commercial multiwall carbon nanotubes (MWCNT) suspended in a simulated inorganic matrix (SIM) and their impacts on bacteria growing in biofilms were evaluated. Both solar irradiation and the presence of HA lead to the dissolution of adsorbed metals on the MWCNT, which are residues of synthesis catalysts. Also, preferential adsorption of certain HA components on the MWCNT induces important modifications in the aliphatic/aromatic relationship of HA components in solution and the generation and release of new moieties. Results demonstrated that the variation of such physicochemical parameters strongly affects the interactions of MWCNT with Pseudomonas aeruginosa sessile bacteria. Thus, the number of attached bacteria increased, and stress responses such as decrease in bacterial size were found in the presence of sunlight-irradiated MWCNT with a particular distribution of extracellular polymeric substances (EPS) strands. A shielding effect was observed when HA was added. It was concluded that physicochemical alterations caused by environmental conditions (with/without irradiation, presence/absence of HA) on MWCNT-containing SIM trigger distinctive adaptive behavior of bacteria in biofilms. This information must be taken into account in the development of biologically assisted treatments for organic metal co-contamination of MWCNT-containing media since MWCNT discharge alters the physicochemical properties and composition of the aqueous environment and the response of the biofilms that interact with it.

Axenic in vitro cultivation of 19 peat moss (Sphagnum L.) species as a resource for basic biology, biotechnology, and paludiculture

Sphagnum farming can substitute peat with renewable biomass and thus help mitigate climate change. Large volumes of the required founder material can only be supplied sustainably by axenic cultivation in bioreactors. We established axenic in vitro cultures from sporophytes of 19 Sphagnum species collected in Austria, Germany, Latvia, the Netherlands, Russia, and Sweden: S. angustifolium, S. balticum, S. capillifolium, S. centrale, S. compactum, S. cuspidatum, S. fallax, S. fimbriatum, S. fuscum, S. lindbergii, S. medium/divinum, S. palustre, S. papillosum, S. rubellum, S. russowii, S. squarrosum, S. subnitens, S. subfulvum and S. warnstorfii. These species cover five of the six European Sphagnum subgenera; namely, Acutifolia, Cuspidata, Rigida, Sphagnum and Squarrosa. Their growth was measured in suspension cultures, whereas their ploidy was determined by flow cytometry and compared with the genome size of Physcomitrella patens. We identified haploid and diploid Sphagnum species, found that their cells are predominantly arrested in the G1 phase of the cell cycle, and did not find a correlation between plant productivity and ploidy. DNA barcoding was achieved by sequencing introns of the BRK1 genes. With this collection, high-quality founder material for diverse large-scale applications, but also for basic Sphagnum research, is available from the International Moss Stock Center.