A combined molecular and morphological phylogeny of the Loricariinae (Siluriformes: Loricariidae), with emphasis on the Harttiini and Farlowellini

Species delimitation and historical biogeography of Sturisoma Swainson, 1838 (Loricariidae: Loricariinae): Hidden diversity along the Amazon River

In the present study, we used DNA sequences from three mitochondrial (COI, Cytb, and nd2) and one nuclear (RAG2) marker, to perform species delimitation analyses (ABGD, GMYC, BPP, and bPTP) within Sturisoma to test the validity of currently recognized and potential new species for the genus. Additionally, a historical biogeographic analysis was carried out to test the age and centers of origin for species of the genus. Results found here indicate a high degree of genetic divergence with overlapping morphological characteristics suggesting a greater diversity than previously proposed for the genus. All valid species currently included in Sturisoma were confirmed here, and one potentially undescribed species was recovered. Based on genetic distances, geographical patterns and historical biogeography, the diversification of the group could be related to dispersal events from Western to Eastern Amazonia resulting in sympatric species that are highly divergent genetically but conservative morphologically. The lower (eastern) Amazonas and the Orinoco River basins were identified as the main centers of origin for the genus, with an approximate age of origin of 13 Mya, during the Miocene. The diversity of the genus is likely to be even higher because the Amazon River is a hotspot of hidden biodiversity.

The role of satellite DNAs in the chromosomal rearrangements and the evolution of the rare XY1Y2 sex system in Harttia (Siluriformes: Loricariidae)

The underlying processes behind the formation, evolution, and long-term maintenance of multiple sex chromosomes have been largely neglected. Among vertebrates, fishes represent the group with the highest diversity of multiple sex chromosome systems and, with six instances, the Neotropical fish genus Harttia stands out by presenting the most remarkable diversity. However, although the origin mechanism of their sex chromosome systems is well discussed, little is known about the importance of some repetitive DNA classes in the differentiation of multiple systems. In this work, by employing a combination of cytogenetic and genomic procedures, we evaluated the satellite DNA composition of H. carvalhoi with a focus on their role in the evolution, structure, and differentiation process of the rare XY1Y2 multiple-sex chromosome system. The genome of H. carvalhoi contains a total of 28 satellite DNA families, with the A + T content ranging between 38.1% and 68.1% and the predominant presence of long satellites. The in situ hybridization experiments detected 15 satellite DNAs with positive hybridization signals mainly on centromeric and pericentromeric regions of almost all chromosomes or clustered on a few pairs. Five of them presented clusters on X, Y1, and/or Y2 sex chromosomes which were therefore selected for comparative hybridization in the other three congeneric species. We found several conserved satellites accumulated on sex chromosomes and also in regions that were involved in chromosomal rearrangements. Our results provide a new contribution of satellitome studies in multiple sex chromosome systems in fishes and represent the first satellitome study for a Siluriformes species.

Taxonomic revision of Sturisoma Swainson, 1838 (Loricariidae: Loricariinae), with descriptions of four new species

A taxonomic revision of Sturisoma is presented. Individuals including both type and non-type specimens of all valid species were examined. Sturisoma was found to comprise 10 valid species: Sturisoma barbatum, Sturisoma brevirostre, Sturisoma graffini, Sturisoma guentheri, Sturisoma lyra, Sturisoma monopelte, Sturisoma nigrirostrum, Sturisoma reisi, Sturisoma rostratum, and Sturisoma tenuirostre. Furthermore, four new species are described: Sturisoma ghazziae, new species, from the Araguaia River, belonging to the Tocantins-Araguaia basin, Central Brazil; Sturisoma careirensia, new species, from the middle Amazon basin, Brazil; Sturisoma rapppydanielae, new species, from the Purus River, Amazon basin, Brazil; and Sturisoma defranciscoi, new species, from the Putumayo and Solimões rivers, upper Amazon basin, Colombia, and Brazil. Sturisoma robustum is confirmed as synonym of S. barbatum, species registered along the Paraguay/Parana/La Plata River basin in Argentina, Brazil, and Paraguay. New records were found for S. nigrirostrum as present in the upper Amazon basin, in the Yavari River, Brazil, in addition to its already known locality, the Ucayali River, Peru. The distribution of the type species of the genus S. rostratum is limited to the lower portion of the Amazon basin in the Araguaia, Maranhão, Mearim, Tapajós, and Tocantins rivers and its affluents, Brazil, in contrast to the assumed widespread distribution across the main basins of South America, as previously proposed for the species; the Mearim River is a new record for the species. Updated diagnoses and descriptions are offered for species of Sturisoma, in addition to distribution maps and an identification key for the species.

Holding in the stream: convergent evolution of suckermouth structures in Loricariidae (Siluriformes)

Suckermouth armoured catfish (Loricariidae) are a highly speciose and diverse freshwater fish family, which bear upper and lower lips forming an oral disc. Its hierarchical organisation allows the attachment to various natural surfaces. The discs can possess papillae of different shapes, which are supplemented, in many taxa, by small horny projections, i.e. unculi. Although these attachment structures and their working mechanisms, which include adhesion and interlocking, are rather well investigated in some selected species, the loricariid oral disc is unfortunately understudied in the majority of species, especially with regard to comparative aspects of the diverse oral structures and their relationship to the ecology of different species. In the present paper, we investigated the papilla and unculi morphologies in 67 loricariid species, which inhabit different currents and substrates. We determined four papilla types and eight unculi types differing by forms and sizes. Ancestral state reconstructions strongly suggest convergent evolution of traits. There is no obvious correlation between habitat shifts and the evolution of specific character states. From handling the structures and from drying artefacts we could infer some information about their material properties. This, together with their shape, enabled us to carefully propose hypotheses about mechanisms of interactions of oral disc structures with natural substrates typical for respective fish species.

How many species of Sturisoma (Siluriformes: Loricariinae) inhabit the La Plata Basin?

The aim of the present contribution is to review the taxonomy of the loricariid Sturisoma in the La Plata basin. The original description of the species S. barbatum is analyzed and compared to Regans later description of S. robustum. We noticed that Kners illustrations may have influenced the description by Regan and other later authors, leading to confusion in the taxonomy of Sturisoma. The diagnostic characteristics and molecular data of S. barbatum and S. robustum are discussed, and we concluded that the differences observed by previous authors are part of the intraspecific variation within a single species. This indicates that S. barbatum is a senior synonym of S. robustum. Sturisoma barbatum is compared to other Sturisoma species.

Homeology of sex chromosomes in Amazonian Harttia armored catfishes supports the X-fission hypothesis for the X1X2Y sex chromosome system origin

The Neotropical monophyletic catfish genus Harttia represents an excellent model to study karyotype and sex chromosome evolution in teleosts. Its species split into three phylogenetic clades distributed along the Brazilian territory and they differ widely in karyotype traits, including the presence of standard or multiple sex chromosome systems in some members. Here, we investigate the chromosomal rearrangements and associated synteny blocks involved in the origin of a multiple X1X2Y sex chromosome system present in three out of six sampled Amazonian-clade species. Using 5S and 18S ribosomal DNA fluorescence in situ hybridization and whole chromosome painting with probes corresponding to X1 and X2 chromosomes of X1X2Y system from H. punctata, we confirm previous assumptions that X1X2Y sex chromosome systems of H. punctata, H. duriventris and H. villasboas represent the same linkage groups which also form the putative XY sex chromosomes of H. rondoni. The shared homeology between X1X2Y sex chromosomes suggests they might have originated once in the common ancestor of these closely related species. A joint arrangement of mapped H. punctata X1 and X2 sex chromosomes in early diverging species of different Harttia clades suggests that the X1X2Y sex chromosome system may have formed through an X chromosome fission rather than previously proposed Y-autosome fusion.

Turnover of multiple sex chromosomes in Harttia catfish (Siluriformes, Loricariidae): a glimpse from whole chromosome painting

The remarkable fish biodiversity encompasses also great sex chromosome variability. Harttia catfish belong to Neotropical models for karyotype and sex chromosome research. Some species possess one of the three male-heterogametic sex chromosome systems, XY, X1X2Y or XY1Y2, while other members of the genus have yet uncharacterized modes of sex determination. Particularly the XY1Y2 multiple sex chromosome system shows a relatively low incidence among vertebrates, and it has not been yet thoroughly investigated. Previous research suggested two independent X-autosome fusions in Harttia which led to the emergence of XY1Y2 sex chromosome system in three of its species. In this study, we investigated evolutionary trajectories of synteny blocks involved in this XY1Y2 system by probing six Harttia species with whole chromosome painting (WCP) probes derived from the X (HCA-X) and the chromosome 9 (HCA-9) of H. carvalhoi. We found that both painting probes hybridize to two distinct chromosome pairs in Amazonian species, whereas the HCA-9 probe paints three chromosome pairs in H. guianensis, endemic to Guyanese drainages. These findings demonstrate distinct evolutionary fates of mapped synteny blocks and thereby elevated karyotype dynamics in Harttia among the three evolutionary clades.

A new genus and species of whiptail armored catfish (Siluriformes: Loricariinae) from southern Venezuela

A new genus and species of whiptail loricariid catfish belonging to the Pseudohemiodon group is described with 12 specimens captured from the upper Orinoco River and Casiquiare River, Amazonas State, Venezuela. The specimens show delicate and fragile appearance, and are small (largest specimen 74.3 mm SL). The new species has external morphological characters that support its inclusion in the Pseudohemiodon group; however, its mouth morphology is distinctive and unique with features not observed in any species of that group, nor in any other species included in tribe Loricariini or in subfamily Loricariinae. The distinctive buccal characters include: 1) barblets on upper lip border and the maxillary barbel included and interconnected by translucent membrane, leaving the tips free; 2) lower lip surface covered with elongated, cylindrical, unbranched, and fleshy barblets, which resemble filaments, some of them surpassing the border of lower lip. The comparative analyses carried out determined that the recently described species Rhadinoloricaria papillosa has the same two diagnostic buccal characters observed in the new species; therefore it is transferred to the new genus.

A new species of Sturisoma Swainson, 1838 (Loricariidae: Loricariinae), from the Madeira River basin, with a discussion of historical biogeography of western Amazonas and Paraguay River basins

A new loricariin species of Sturisoma is described from the Cautário, Guaporé, Mamoré, Machado and Soteiro rivers, Madeira River basin, in Bolivia and Brazil. The new species is distinguished from its congeners by the presence of a middorsal longitudinal, thin dark brown stripe on the caudal peduncle, extending from two or three plates posterior to the dorsal-fin base, reaching the origin of the caudal fin, or one or two plates anterior to the origin of the caudal fin; small squarish anteriormost abdominal plates; and a middorsal longitudinal dark-brown stripe from first predorsal plate to near the dorsal-fin origin. Furthermore, the new species is diagnosed from congeners by plate morphology, counts on the median series, coalescent plates and ventrolateral thoracic plates, in addition to measurements related to body and head structures. An analysis of genetic distances using cytochrome C oxidase subunit 1 gene marker of the mitochondrial genome between the new species and several congeners is presented, in addition to a likelihood analysis to illustrate the position of the new taxon within Sturisoma. An identification key for species of the genus currently recorded at the upper Amazonas River basin is provided.

Evolutionary breakpoint regions and chromosomal remodeling in Harttia (Siluriformes: Loricariidae) species diversification

The Neotropical armored catfish genus Harttia presents a wide variation of chromosomal rearrangements among its representatives. Studies indicate that translocation and Robertsonian rearrangements have triggered the karyotype evolution in the genus, including differentiation of sex chromosome systems. However, few studies used powerful tools, such as comparative whole chromosome painting, to clarify this highly diversified scenario. Here, we isolated probes from the X1 (a 5S rDNA carrier) and the X2 (a 45S rDNA carrier) chromosomes of Harttia punctata, which displays an X1X1X2X2/X1X2Y multiple sex chromosome system. Those probes were applied in other Harttia species to evidence homeologous chromosome blocks. The resulting data reinforce that translocation events played a role in the origin of the X1X2Y sex chromosome system in H. punctata. The repositioning of homologous chromosomal blocks carrying rDNA sites among ten Harttia species has also been demonstrated. Anchored to phylogenetic data it was possible to evidence some events of the karyotype diversification of the studied species and to prove an independent origin for the two types of multiple sex chromosomes, XX/XY1Y2 and X1X1X2X2/X1X2Y, that occur in Harttia species. The results point to evolutionary breakpoint regions in the genomes within or adjacent to rDNA sites that were widely reused in Harttia chromosome remodeling.

The genus Pseudohemiodon (Siluriformes, Loricariidae) in Ecuador, with the description of a new species

At the Fish Collection of the Museo de la Escuela Politecnica Nacional (MEPN), Quito, the specimens of the genus Pseudohemiodon were revised and three species were identified. The three species inhabit the Amazon versant of Ecuador. Chronologically the species are: P. lamina (Günther 1868) originally described from Xeberos (Jeberos), Peru; P. apithanos Isbrücker & Nijssen 1978, originally described from the Conejo River, Putumayo River system, Ecuador, and a new species described herein. The new species was caught in the Aguarico River, Napo River system, and is represented by two small sized specimens. It is distinguished from all congeners by the combination of the following characters: abdomen totally covered with small to medium-sized, irregularly shaped plates; absence of small plates, anterior to gill openings; eyes relatively small, and six to seven dark transverse bands, posterior to the dorsal-fin. Isbrücker & Nijssen (1978) indicate the presence of P. laticeps (Regan 1904) in Ecuador; however we didn’t find any specimen of this species. The specimens that could potentially be identified as P. laticeps are large sized specimens of P. apithanos. Some external morphological characters, morphometric and meristic data of analyzed specimens of P. apithanos and P. lamina are provided.  

Chromosomal Rearrangements and Origin of the Multiple XX/XY1Y2 Sex Chromosome System in Harttia Species (Siluriformes: Loricariidae)

The Neotropical genus Harttia comprises species with extensive chromosomal remodeling and distinct sex chromosome systems (SCSs). So far, three different SCSs with male heterogamety have been characterized in the group. In some species, the presence of the XX/XY₁Y₂ SCS is associated with a decrease in diploid numbers and several chromosomal rearrangements, although a direct relation to sex chromosome differentiation has not been shown yet. Here, we aimed to investigate the differentiation processes that have led to the establishment of the rare XX/XY₁Y₂ SCS and track its evolutionary history among other Harttia species. For that, four whole chromosome painting probes derived from chromosome 1 of H. torrenticola (HTO-1), chromosomes 9 and X of H. carvalhoi (HCA-9 and HCA-X), and chromosome X from H. intermontana (HIN-X) were applied in nine Harttia species. Homeologous chromosome blocks were located in Harttia species and demonstrated that Robertsonian (Rb) fusions originated HTO-1, HCA-9, and HCA-X chromosomes, while Rb fissions explain Y₁ and Y₂ sex chromosomes. Specifically, in H. intermontana, HCA-X, HCA-9, and the NOR-bearing chromosome demonstrated that homeologous blocks were used in the HIN-X and metacentric pair 2 origins. Consequently, diploid numbers changed between the studied species. Overall, the data also reinforce the existence of unstable genomic sites promoting chromosomal differentiation and remodeling within the genus Harttia.

A new species of Harttia from the rio São Francisco basin (Siluriformes: Loricariidae)

Abstract The genus Harttia belongs to the subfamily Loricariinae and has to date 27 described species, distributed in the drainages of Guiana Shield, Amazon and southeastern Brazil. The new species is distinguished from its congeners by the combination of: canal plate present; abdominal plates absent; trapezoid preanal plates; males with elongated and conspicuous odontodes on the first pectoral-fin ray and on the lateral region of the head, close to the canal plate; and dorsal-fin spinelet present. An identification key for the species of the rio São Francisco basin and a comparison between the new taxon and all other species of the genus are presented.

Adding New Pieces to the Puzzle of Karyotype Evolution in Harttia (Siluriformes, Loricariidae): Investigation of Amazonian Species

A remarkable morphological diversity and karyotype variability can be observed in the Neotropical armored catfish genus Harttia. These fishes offer a useful model to explore both the evolution of karyotypes and sex chromosomes, since many species possess male-heterogametic sex chromosome systems and a high rate of karyotype repatterning. Based on the karyotype organization, the chromosomal distribution of several repetitive DNA classes, and the rough estimates of genomic divergences at the intraspecific and interspecific levels via Comparative Genomic Hybridization, we identified shared diploid chromosome numbers (2n = 54) but different karyotype compositions in H. dissidens (20m + 26sm + 8a) and Harttia sp. 3 (16m + 18sm + 14st + 6a), and different 2n in H. guianensis (2n = 58; 20m + 26sm + 2st + 10a). All species further displayed similar patterns of chromosomal distribution concerning constitutive heterochromatin, 18S ribosomal DNA (rDNA) sites, and most of the surveyed microsatellite motifs. Furthermore, differences in the distribution of 5S rDNA sites and a subset of microsatellite sequences were identified. Heteromorphic sex chromosomes were lacking in H. dissidens and H. guianensis at the scale of our analysis. However, one single chromosome pair in Harttia sp. 3 males presented a remarkable accumulation of male genome-derived probe after CGH, pointing to a tentative region of early sex chromosome differentiation. Thus, our data support already previously outlined evidence that Harttia is a vital model for the investigation of teleost karyotype and sex chromosome dynamics.

The distribution of Cteniloricaria (Siluriformes: Loricariidae): known and new records in Brazil suggest headwater captures as drivers of disjoint distribution

Abstract Cteniloricaria is a genus of Neotropical armored catfishes belonging to the Loricariinae, currently including two valid species: C. platystoma and C. napova. Cteniloricaria platystoma is presently recorded across the main coastal drainages of the Guiana Shield, from the Sinnamary River, French Guiana, to the Essequibo River basin, Guyana, and is considered to be restricted to the region. Cteniloricaria napova is only known from its type locality at the headwaters of the Paru de Oeste River, Amazon basin, Sipaliwini Savannah, Trio Amerindian territory in Suriname, close to the Brazilian border. Based on a specimen of C. napova, captured in the Cuminapanema River, a tributary to the Curuá River, within Brazilian territory, the geographic distribution of the species and the genus is extended, representing the first record of Cteniloricaria in Brazil. The genus shows a disjoint distribution, and divergence between populations in the north-flowing coastal rivers of the Guianas and the south-flowing Amazon tributaries, and more recent headwater capture between south-flowing Amazon tributaries, may have played a key role in shaping its current distribution. Illustrations, diagnostic characters, morphometrics, description of the habitat where the new specimen was captured, extinction risk assessment, and a discussion of the distribution of the genus are provided.