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Ohno M, Higuchi Y, Yamai K, Fuchigami S, Sasaki T, Oda Y, Hayashi I. Structural analysis of microtubule binding by minus-end targeting protein Spiral2. BIOCHIMICA ET BIOPHYSICA ACTA. MOLECULAR CELL RESEARCH 2024; 1871:119858. [PMID: 39370045 DOI: 10.1016/j.bbamcr.2024.119858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 09/29/2024] [Accepted: 10/01/2024] [Indexed: 10/08/2024]
Abstract
Microtubules (MTs) are dynamic cytoskeletal polymers that play a critical role in determining cell polarity and shape. In plant cells, acentrosomal MTs are localized on the cell surface and are referred to as cortical MTs. Cortical MTs nucleate in the cell cortex and detach from nucleation sites. The released MT filaments perform treadmilling, with the plus-ends of MTs polymerizing and the minus-ends depolymerizing. Minus-end targeting proteins, -TIPs, include Spiral2, which regulates the minus-end dynamics of acentrosomal MTs. Spiral2 accumulates autonomously at MT minus-ends and inhibits filament shrinkage, but the mechanism by which Spiral2 specifically recognizes minus-ends of MTs remains unknown. Here we describe the crystal structure of Spiral2's N-terminal MT-binding domain. The structural properties of this domain resemble those of the HEAT repeat structure of the tumor overexpressed gene (TOG) domain, but the number of HEAT repeats is different and the conformation is highly arched. Gel filtration and co-sedimentation analyses demonstrate that the domain binds preferentially to MT filaments rather than the tubulin dimer, and that the tubulin-binding mode of Spiral2 via the basic surface is similar to that of the TOG domain. We constructed an in silico model of the Spiral2-tubulin complex to identify residues that potentially recognize tubulin. Mutational analysis revealed that the key residues inferred in the model are involved in microtubule recognition, and provide insight into the mechanism by which end-targeting proteins stabilize MT ends.
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Affiliation(s)
- Marina Ohno
- Department of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Yuuki Higuchi
- Department of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Kazune Yamai
- Department of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Sotaro Fuchigami
- School of Pharmaceutical Sciences, University of Shizuoka, 52-1 Yada, Suruga, Shizuoka, Japan
| | - Takema Sasaki
- Department of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi, Japan
| | - Yoshihisa Oda
- Department of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi, Japan
| | - Ikuko Hayashi
- Department of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.
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Yagi N, Fujita S, Nakamura M. Plant microtubule nucleating apparatus and its potential signaling pathway. CURRENT OPINION IN PLANT BIOLOGY 2024; 82:102624. [PMID: 39232346 DOI: 10.1016/j.pbi.2024.102624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 08/02/2024] [Accepted: 08/12/2024] [Indexed: 09/06/2024]
Abstract
Plant cell cortical microtubules are located beneath the plasma membrane and direct the location of cellulose synthases during interphase, influencing cell morphology. Microtubule-associated proteins (MAPs) regulate these microtubules in response to growth and environmental stimuli. This review focuses on recent advances in understanding microtubule nucleation mechanisms in plants and the spatiotemporal regulation of cortical arrays via phytohormone signaling. Emphasis is placed on the conserved nature of the gamma-tubulin ring complex (γTuRC) and plant-specific components. The discussion includes the role of the Augmin complex and the distinct function of the Msd1-Wdr8 complex in plants. We also explore the effects of hormone signaling, particularly brassinosteroids, on the microtubule regulatory apparatus. The interplay between hormone signaling pathways and microtubule dynamics, including phosphorylation events and post-translational modifications, is also addressed. Finally, the impact of environmental signals and the role of protein post-translational modifications in regulating microtubule organization are suggested for future research.
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Affiliation(s)
- Noriyoshi Yagi
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, 464-8601, Japan
| | - Satoshi Fujita
- Plant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3, 24 Chemin de Borde Rouge, 31320, Auzeville Tolosane, France
| | - Masayoshi Nakamura
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, 464-8601, Japan; Institute of Advanced Research, Nagoya University, Nagoya, 464-0814, Japan.
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Fan Y, Bilkey N, Bolhuis DL, Slep KC, Dixit R. A divergent tumor overexpressed gene domain and oligomerization contribute to SPIRAL2 function in stabilizing microtubule minus ends. THE PLANT CELL 2024; 36:1056-1071. [PMID: 38011314 PMCID: PMC10980349 DOI: 10.1093/plcell/koad294] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 11/06/2023] [Accepted: 11/13/2023] [Indexed: 11/29/2023]
Abstract
The acentrosomal cortical microtubules (MTs) of higher plants dynamically assemble into specific array patterns that determine the axis of cell expansion. Recently, the Arabidopsis (Arabidopsis thaliana) SPIRAL2 (SPR2) protein was shown to regulate cortical MT length and light-induced array reorientation by stabilizing MT minus ends. SPR2 autonomously localizes to both the MT lattice and MT minus ends, where it decreases the minus end depolymerization rate. However, the structural determinants that contribute to the ability of SPR2 to target and stabilize MT minus ends remain unknown. Here, we present the crystal structure of the SPR2 N-terminal domain, which reveals a unique tumor overexpressed gene (TOG) domain architecture with 7 HEAT repeats. We demonstrate that a coiled-coil domain mediates the multimerization of SPR2, which provides avidity for MT binding, and is essential to bind soluble tubulin. In addition, we found that an SPR2 construct spanning the TOG domain, basic region, and coiled-coil domain targets and stabilizes MT minus ends similar to full-length SPR2 in plants. These results reveal how a TOG domain, which is typically found in microtubule plus-end regulators, has been appropriated in plants to regulate MT minus ends.
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Affiliation(s)
- Yuanwei Fan
- Department of Biology and Center for Engineering Mechanobiology, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - Natasha Bilkey
- Department of Biology and Center for Engineering Mechanobiology, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - Derek L Bolhuis
- Program in Molecular and Cellular Biophysics, University of North Carolina, Chapel Hill, NC 27514, USA
| | - Kevin C Slep
- Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA
| | - Ram Dixit
- Department of Biology and Center for Engineering Mechanobiology, Washington University in St. Louis, St. Louis, MO 63130, USA
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