Binding interaction of benzamide derivatives as inhibitors of DNA gyrase and Sec14p using Molegro Virtual Docker based on binding free energy

The docking simulation of benzamide derivatives as ligands and protein targets (DNA–gyrase) was performed and Sec14p binding mode interaction was predicted based on binding free energy analysis. Software Molegro Virtual Docking (MVD) was used to visualize the ligand–protein binding interactions. The results indicated the prevalence of steric or hydrophobic interactions among all the benzamide ligands besides hydrogen bonding or electrostatic interactions. The compounds B2, B4 against DNA gyrase, and compounds B3, B5 against Sec14p showed an uncompetitive pattern of inhibition as compared with the reference molecule. While compounds B1, B5 exhibited the best MolDock scores, i.e., −109.736 and −114.391 kcal/mol respectively for DNA gyrase, also compounds B1 and B2 against Sec14p displayed −100.105 and −119.451 kcal/mol sequentially. It was evident from the comparison of MolDock score for both the bacterial and fungal protein receptors that all the ligands were found to be more potent against DNA gyrase than Sec14p. However, only compound B2 with MolDock score −119.451 kcal/mol showed exceptional activity against Sec14p and was predicted to have potency as a lead compound to find a new anti-fungal therapeutic agent. Docking studies further highlighted the unique interactions such as tail-end hydrophobic rings of benzamide inhibitors with catalytically important amino acid residues, allowing flexibility in binding to both the receptors different from other inhibitors. These findings showed us that B1, B2 against Staphylococcus aureus and B5 against Saccharomyces cerevisiae could be leading compounds to discover new multidrug-resistant strains.

The physicochemical and DNA binding studies of some medicinal compounds in solutions

To understand the expected mode of action, the physicochemical study on the solution properties of medicinal compounds and their interaction with deoxyribonucleic acid (DNA), under varying experimental conditions, is of prime importance. The present research work illustrates the physicochemical study and interaction of certain medicinal compounds such as; Levofloxacin, Ciprofloxacin, and Ibuprofen with DNA. Density, viscosity and surface tension measurements have been performed in order to determine, in a systematic manner, the physicochemical, volumetric and thermodynamic properties of these compounds; and most of these parameters have shown different behavior with varying concentration of solution, temperature of the medium and chemical nature/structure of the compound. In addition, these drugs showed a spontaneous surface-active and association behavior in aqueous solutions. The flow behavior, surface properties, volumetric behavior and solute–solvent interaction of these drugs were prominently influenced by experimental variables and addition of DNA to their solutions. UV–Visible spectroscopy was also used to examine the interaction of these drugs with DNA in aqueous media in detail. Calculated values of binding constants (Kb) for all complexes of drug-DNA are positive, indicating a fruitful binding process. It is seen that a smaller Kb value reflects weaker binding of the drug with DNA and vise versa. Due to the difference in the chemical structure of drugs the values of binding constant are different for various drug-DNA complexes and follow the order Kb(Levofloxacin-DNA) > Kb(Ciprofloxacin-DNA) > Kb(Ibuprofen-DNA). On the basis of spectral changes and Kb it can be said that the binding of all these drugs with DNA may be of physicochemical nature and the dominating binding force be of hydrogen bonding between oxygen of drugs and hydrogen of DNA units and the drug having more oxygen atoms showed stronger binding ability. The data further suggest a limited possibility of chemical type attachment of these drugs with DNA.

Kinetics, equilibrium and thermodynamics of dyes adsorption onto modified chitosan: a review

In view of promising sorption capacity, stability, biodegradability, cost-effectiveness, environmental friendly nature, regeneration and recycling ability, the chitosan (CS) based adsorbents are highly efficient for the sequestration of dyes. Since CS offers variable chemical structures and CS have been modified by incorporating different moieties. The CS composites with unique properties have been employed successfully for dye adsorption with reasonably high adsorption capacity versus other similar adsorbents. Modifications of CS were promising for the preparation of composites that are extensively studied for their adsorption capacities for various dyes. This review highlights the CS and its modification and their applications for the adsorption of dyes. The removal capacities of CS-based adsorbents, equilibrium modeling, kinetics studies and the thermodynamic characteristics are reported. Moreover, the FTIR, BET, SEM, TGA and XRD were employed for the characterization of CS modified adsorbents are also discussed. Results revealed that the modified CS is highly efficient and can be employed for the sequestration of dyes from effluents.

Kinetics, equilibrium and thermodynamics of dyes adsorption onto modified chitosan: a review

In view of promising sorption capacity, stability, biodegradability, cost-effectiveness, environmental friendly nature, regeneration and recycling ability, the chitosan (CS) based adsorbents are highly efficient for the sequestration of dyes. Since CS offers variable chemical structures and CS have been modified by incorporating different moieties. The CS composites with unique properties have been employed successfully for dye adsorption with reasonably high adsorption capacity versus other similar adsorbents. Modifications of CS were promising for the preparation of composites that are extensively studied for their adsorption capacities for various dyes. This review highlights the CS and its modification and their applications for the adsorption of dyes. The removal capacities of CS-based adsorbents, equilibrium modeling, kinetics studies and the thermodynamic characteristics are reported. Moreover, the FTIR, BET, SEM, TGA and XRD were employed for the characterization of CS modified adsorbents are also discussed. Results revealed that the modified CS is highly efficient and can be employed for the sequestration of dyes from effluents.