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For: Kane NC, Rieseberg LH. Selective sweeps reveal candidate genes for adaptation to drought and salt tolerance in common sunflower, Helianthus annuus. Genetics 2007;175:1823-34. [PMID: 17237516 PMCID: PMC1855101 DOI: 10.1534/genetics.106.067728] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
Number Cited by Other Article(s)
1
Roberts MD, Davis O, Josephs EB, Williamson RJ. K-mer-based Approaches to Bridging Pangenomics and Population Genetics. Mol Biol Evol 2025;42:msaf047. [PMID: 40111256 PMCID: PMC11925024 DOI: 10.1093/molbev/msaf047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 01/10/2025] [Accepted: 02/04/2025] [Indexed: 03/12/2025]  Open
2
Wang Z, Zhou J, Zou J, Yang J, Chen W. Characterization of PYL gene family and identification of HaPYL genes response to drought and salt stress in sunflower. PeerJ 2024;12:e16831. [PMID: 38464756 PMCID: PMC10924776 DOI: 10.7717/peerj.16831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 01/04/2024] [Indexed: 03/12/2024]  Open
3
Ranathunge C, Chimahusky ME, Welch ME. A comparative study of population genetic structure reveals patterns consistent with selection at functional microsatellites in common sunflower. Mol Genet Genomics 2022;297:1329-1342. [PMID: 35786764 DOI: 10.1007/s00438-022-01920-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Accepted: 06/16/2022] [Indexed: 10/17/2022]
4
Song JM, Zhang Y, Zhou ZW, Lu S, Ma W, Lu C, Chen LL, Guo L. Oil plant genomes: current state of the science. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:2859-2874. [PMID: 35560205 DOI: 10.1093/jxb/erab472] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Accepted: 10/22/2021] [Indexed: 05/25/2023]
5
Scossa F, Fernie AR. The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Comput Struct Biotechnol J 2020;18:482-500. [PMID: 32180906 PMCID: PMC7063335 DOI: 10.1016/j.csbj.2020.02.009] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2019] [Revised: 02/12/2020] [Accepted: 02/13/2020] [Indexed: 01/21/2023]  Open
6
Neupane S, Schweitzer SE, Neupane A, Andersen EJ, Fennell A, Zhou R, Nepal MP. Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (Helianthus annuus L.). PLANTS (BASEL, SWITZERLAND) 2019;8:E28. [PMID: 30678298 PMCID: PMC6409774 DOI: 10.3390/plants8020028] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2018] [Revised: 01/07/2019] [Accepted: 01/16/2019] [Indexed: 12/12/2022]
7
Neupane S, Andersen EJ, Neupane A, Nepal MP. Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.). Genes (Basel) 2018;9:genes9080384. [PMID: 30061549 PMCID: PMC6115920 DOI: 10.3390/genes9080384] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 07/17/2018] [Accepted: 07/20/2018] [Indexed: 01/08/2023]  Open
8
Liang C, Wang W, Wang J, Ma J, Li C, Zhou F, Zhang S, Yu Y, Zhang L, Li W, Huang X. Identification of differentially expressed genes in sunflower (Helianthus annuus) leaves and roots under drought stress by RNA sequencing. BOTANICAL STUDIES 2017;58:42. [PMID: 29071432 PMCID: PMC5656504 DOI: 10.1186/s40529-017-0197-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Accepted: 10/02/2017] [Indexed: 05/20/2023]
9
Ranwez V, Serra A, Pot D, Chantret N. Domestication reduces alternative splicing expression variations in sorghum. PLoS One 2017;12:e0183454. [PMID: 28886042 PMCID: PMC5590825 DOI: 10.1371/journal.pone.0183454] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Accepted: 08/06/2017] [Indexed: 01/09/2023]  Open
10
Nie G, Tang L, Zhang Y, Huang L, Ma X, Cao X, Pan L, Zhang X, Zhang X. Development of SSR Markers Based on Transcriptome Sequencing and Association Analysis with Drought Tolerance in Perennial Grass Miscanthus from China. FRONTIERS IN PLANT SCIENCE 2017;8:801. [PMID: 28559912 PMCID: PMC5432562 DOI: 10.3389/fpls.2017.00801] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2017] [Accepted: 04/28/2017] [Indexed: 05/02/2023]
11
Wu Y, Meng K, Liang X. Distinct patterns of natural selection in Na+/H+ antiporter genes in Populus euphratica and Populus pruinosa. Ecol Evol 2016;7:82-91. [PMID: 28070277 PMCID: PMC5214168 DOI: 10.1002/ece3.2639] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Revised: 10/17/2016] [Accepted: 10/19/2016] [Indexed: 01/28/2023]  Open
12
Zhong X, Feng D, Yu H, Kong L, Li Q. Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers. PLoS One 2016;11:e0150868. [PMID: 26954577 PMCID: PMC4783100 DOI: 10.1371/journal.pone.0150868] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Accepted: 02/05/2016] [Indexed: 11/18/2022]  Open
13
Haasl RJ, Payseur BA. Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication. Mol Ecol 2015. [PMID: 26224644 DOI: 10.1111/mec.13339] [Citation(s) in RCA: 109] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
14
Smadja CM, Loire E, Caminade P, Thoma M, Latour Y, Roux C, Thoss M, Penn DJ, Ganem G, Boursot P. Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse. Mol Ecol 2015;24:4222-4237. [PMID: 26132782 DOI: 10.1111/mec.13301] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 06/12/2015] [Accepted: 06/17/2015] [Indexed: 12/11/2022]
15
Burrell AM, Pepper AE, Hodnett G, Goolsby JA, Overholt WA, Racelis AE, Diaz R, Klein PE. Exploring origins, invasion history and genetic diversity ofImperata cylindrica(L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing. Mol Ecol 2015;24:2177-93. [DOI: 10.1111/mec.13167] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Revised: 03/16/2015] [Accepted: 03/18/2015] [Indexed: 12/31/2022]
16
Pramod S, Perkins AD, Welch ME. Patterns of microsatellite evolution inferred from the Helianthus annuus (Asteraceae) transcriptome. J Genet 2015;93:431-42. [PMID: 25189238 DOI: 10.1007/s12041-014-0402-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
17
Li YH, Reif JC, Jackson SA, Ma YS, Chang RZ, Qiu LJ. Detecting SNPs underlying domestication-related traits in soybean. BMC PLANT BIOLOGY 2014;14:251. [PMID: 25258093 PMCID: PMC4180965 DOI: 10.1186/s12870-014-0251-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2014] [Accepted: 09/18/2014] [Indexed: 05/26/2023]
18
Quintela M, Johansson MP, Kristjánsson BK, Barreiro R, Laurila A. AFLPs and mitochondrial haplotypes reveal local adaptation to extreme thermal environments in a freshwater gastropod. PLoS One 2014;9:e101821. [PMID: 25007329 PMCID: PMC4090234 DOI: 10.1371/journal.pone.0101821] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Accepted: 06/11/2014] [Indexed: 01/06/2023]  Open
19
Fine-mapping and selective sweep analysis of QTL for cold tolerance in Drosophila melanogaster. G3-GENES GENOMES GENETICS 2014;4:1635-45. [PMID: 24970882 PMCID: PMC4169155 DOI: 10.1534/g3.114.012757] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
20
Kawakami T, Darby BJ, Ungerer MC. Transcriptome resources for the perennial sunflowerHelianthus maximilianiobtained from ecologically divergent populations. Mol Ecol Resour 2014;14:812-9. [DOI: 10.1111/1755-0998.12227] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2013] [Revised: 01/07/2014] [Accepted: 01/08/2014] [Indexed: 11/30/2022]
21
Kantar MB, Baute GJ, Bock DG, Rieseberg LH. Genomic variation in Helianthus: learning from the past and looking to the future. Brief Funct Genomics 2014;13:328-40. [DOI: 10.1093/bfgp/elu004] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
22
Toivainen T, Pyhäjärvi T, Niittyvuopio A, Savolainen O. A recent local sweep at the PHYA locus in the Northern European Spiterstulen population of Arabidopsis lyrata. Mol Ecol 2014;23:1040-52. [PMID: 24471518 DOI: 10.1111/mec.12682] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Revised: 12/14/2013] [Accepted: 01/08/2014] [Indexed: 11/29/2022]
23
Rieseberg L, Vines T, Gow J, Kane N. Molecular Ecology continues to perform well according to the major publication metrics. Introduction. Mol Ecol 2014;23:1-15. [PMID: 24372750 DOI: 10.1111/mec.12586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Accepted: 11/06/2013] [Indexed: 11/28/2022]
24
Corrado G, Piffanelli P, Caramante M, Coppola M, Rao R. SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato. BMC Genomics 2013;14:835. [PMID: 24279304 PMCID: PMC4046682 DOI: 10.1186/1471-2164-14-835] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2013] [Accepted: 11/20/2013] [Indexed: 11/10/2022]  Open
25
Fischer I, Steige KA, Stephan W, Mboup M. Sequence evolution and expression regulation of stress-responsive genes in natural populations of wild tomato. PLoS One 2013;8:e78182. [PMID: 24205149 PMCID: PMC3799731 DOI: 10.1371/journal.pone.0078182] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Accepted: 09/09/2013] [Indexed: 11/19/2022]  Open
26
Gandolfi B, Liu H, Griffioen L, Pedersen NC. Simple recessive mutation inENAMis associated with amelogenesis imperfecta in Italian Greyhounds. Anim Genet 2013;44:569-78. [DOI: 10.1111/age.12043] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/21/2013] [Indexed: 11/29/2022]
27
Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, Waits L, Widmer A, Rieseberg LH. A road map for molecular ecology. Mol Ecol 2013;22:2605-26. [DOI: 10.1111/mec.12319] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2013] [Accepted: 03/16/2013] [Indexed: 12/18/2022]
28
Andrew RL, Rieseberg LH. DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES. Evolution 2013;67:2468-82. [DOI: 10.1111/evo.12106] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2012] [Accepted: 02/20/2013] [Indexed: 12/18/2022]
29
Ohtani M, Kondo T, Tani N, Ueno S, Lee LS, Ng KKS, Muhammad N, Finkeldey R, Na'iem M, Indrioko S, Kamiya K, Harada K, Diway B, Khoo E, Kawamura K, Tsumura Y. Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in South-East Asia. Mol Ecol 2013;22:2264-79. [PMID: 23432376 DOI: 10.1111/mec.12243] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Revised: 12/26/2012] [Accepted: 01/05/2013] [Indexed: 11/29/2022]
30
Schoville SD, Bonin A, François O, Lobreaux S, Melodelima C, Manel S. Adaptive Genetic Variation on the Landscape: Methods and Cases. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2012. [DOI: 10.1146/annurev-ecolsys-110411-160248] [Citation(s) in RCA: 217] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
31
Andrew RL, Kane NC, Baute GJ, Grassa CJ, Rieseberg LH. Recent nonhybrid origin of sunflower ecotypes in a novel habitat. Mol Ecol 2012;22:799-813. [DOI: 10.1111/mec.12038] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 07/27/2012] [Accepted: 07/30/2012] [Indexed: 02/04/2023]
32
Alheit KV, Maurer HP, Reif JC, Tucker MR, Hahn V, Weissmann EA, Würschum T. Genome-wide evaluation of genetic diversity and linkage disequilibrium in winter and spring triticale (x Triticosecale Wittmack). BMC Genomics 2012;13:235. [PMID: 22691168 PMCID: PMC3464613 DOI: 10.1186/1471-2164-13-235] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2012] [Accepted: 05/24/2012] [Indexed: 11/10/2022]  Open
33
ANDREW ROSEL, OSTEVIK KATHERINEL, EBERT DANIELP, RIESEBERG LORENH. Adaptation with gene flow across the landscape in a dune sunflower. Mol Ecol 2012;21:2078-91. [DOI: 10.1111/j.1365-294x.2012.05454.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
34
Hohenlohe PA, Catchen J, Cresko WA. Population genomic analysis of model and nonmodel organisms using sequenced RAD tags. Methods Mol Biol 2012;888:235-260. [PMID: 22665285 DOI: 10.1007/978-1-61779-870-2_14] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
35
MAYROSE MAYA, KANE NOLANC, MAYROSE ITAY, DLUGOSCH KATRINAM, RIESEBERG LORENH. Increased growth in sunflower correlates with reduced defences and altered gene expression in response to biotic and abiotic stress. Mol Ecol 2011;20:4683-94. [DOI: 10.1111/j.1365-294x.2011.05301.x] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
36
Fulda S, Mikkat S, Stegmann H, Horn R. Physiology and proteomics of drought stress acclimation in sunflower (Helianthus annuus L.). PLANT BIOLOGY (STUTTGART, GERMANY) 2011;13:632-42. [PMID: 21668604 DOI: 10.1111/j.1438-8677.2010.00426.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
37
Kane NC, Barker MS, Zhan SH, Rieseberg LH. Molecular Evolution across the Asteraceae: Micro- and Macroevolutionary Processes. Mol Biol Evol 2011;28:3225-35. [DOI: 10.1093/molbev/msr166] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
38
Palma-Silva C, Wendt T, Pinheiro F, Barbará T, Fay MF, Cozzolino S, Lexer C. Sympatric bromeliad species (Pitcairnia spp.) facilitate tests of mechanisms involved in species cohesion and reproductive isolation in Neotropical inselbergs. Mol Ecol 2011;20:3185-201. [PMID: 21672064 DOI: 10.1111/j.1365-294x.2011.05143.x] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
39
Fischer I, Camus-Kulandaivelu L, Allal F, Stephan W. Adaptation to drought in two wild tomato species: the evolution of the Asr gene family. THE NEW PHYTOLOGIST 2011;190:1032-1044. [PMID: 21323928 DOI: 10.1111/j.1469-8137.2011.03648.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
40
Rouse MN, Saleh AA, Seck A, Keeler KH, Travers SE, Hulbert SH, Garrett KA. Genomic and resistance gene homolog diversity of the dominant tallgrass prairie species across the U.S. Great Plains precipitation gradient. PLoS One 2011;6:e17641. [PMID: 21532756 PMCID: PMC3075248 DOI: 10.1371/journal.pone.0017641] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2010] [Accepted: 02/08/2011] [Indexed: 12/22/2022]  Open
41
Coyer JA, Hoarau G, Pearson G, Mota C, Jüterbock A, Alpermann T, John U, Olsen JL. Genomic scans detect signatures of selection along a salinity gradient in populations of the intertidal seaweed Fucus serratus on a 12 km scale. Mar Genomics 2011;4:41-9. [PMID: 21429464 DOI: 10.1016/j.margen.2010.12.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2010] [Revised: 12/07/2010] [Accepted: 12/13/2010] [Indexed: 01/13/2023]
42
RICHTER-BOIX ALEX, QUINTELA MARÍA, SEGELBACHER GERNOT, LAURILA ANSSI. Genetic analysis of differentiation among breeding ponds reveals a candidate gene for local adaptation in Rana arvalis. Mol Ecol 2011;20:1582-600. [DOI: 10.1111/j.1365-294x.2011.05025.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
43
An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci. Heredity (Edinb) 2011;106:488-99. [PMID: 21224872 DOI: 10.1038/hdy.2010.164] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]  Open
44
Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger SP, Matnyazov R, Clark DR, Talbert LE, Anderson JA, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner PL, Rudd JC, Haley S, Carver BF, Perry S, Sorrells ME, Akhunov ED. Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics 2010;11:727. [PMID: 21190581 PMCID: PMC3020227 DOI: 10.1186/1471-2164-11-727] [Citation(s) in RCA: 143] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Accepted: 12/29/2010] [Indexed: 11/13/2022]  Open
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Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger SP, Matnyazov R, Clark DR, Talbert LE, Anderson JA, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner PL, Rudd JC, Haley S, Carver BF, Perry S, Sorrells ME, Akhunov ED. Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics 2010. [PMID: 21190581 DOI: 10.1186/1471‐2164‐11‐727] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
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Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger SP, Matnyazov R, Clark DR, Talbert LE, Anderson JA, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner PL, Rudd JC, Haley S, Carver BF, Perry S, Sorrells ME, Akhunov ED. Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics 2010. [PMID: 21190581 DOI: 10.1186/s12870-015-0628-727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]  Open
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Turmelle AS, Kunz TH, Sorenson MD. A tale of two genomes: contrasting patterns of phylogeographic structure in a widely distributed bat. Mol Ecol 2010;20:357-75. [PMID: 21143331 DOI: 10.1111/j.1365-294x.2010.04947.x] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Hohenlohe PA, Phillips PC, Cresko WA. USING POPULATION GENOMICS TO DETECT SELECTION IN NATURAL POPULATIONS: KEY CONCEPTS AND METHODOLOGICAL CONSIDERATIONS. INTERNATIONAL JOURNAL OF PLANT SCIENCES 2010;171:1059-1071. [PMID: 21218185 PMCID: PMC3016716 DOI: 10.1086/656306] [Citation(s) in RCA: 131] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
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Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, King MG, Rieseberg LH. EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics. Evol Bioinform Online 2010;6:143-9. [PMID: 21079755 PMCID: PMC2978936 DOI: 10.4137/ebo.s5861] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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PÉREZ-FIGUEROA A, GARCÍA-PEREIRA MJ, SAURA M, ROLÁN-ALVAREZ E, CABALLERO A. Comparing three different methods to detect selective loci using dominant markers. J Evol Biol 2010;23:2267-2276. [DOI: 10.1111/j.1420-9101.2010.02093.x] [Citation(s) in RCA: 144] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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