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Potapov AM, Chen TW, Striuchkova AV, Alatalo JM, Alexandre D, Arbea J, Ashton T, Ashwood F, Babenko AB, Bandyopadhyaya I, Baretta CRDM, Baretta D, Barnes AD, Bellini BC, Bendjaballah M, Berg MP, Bernava V, Bokhorst S, Bokova AI, Bolger T, Bouchard M, Brito RA, Buchori D, Castaño-Meneses G, Chauvat M, Chomel M, Chow Y, Chown SL, Classen AT, Cortet J, Čuchta P, de la Pedrosa AM, De Lima ECA, Deharveng LE, Doblas Miranda E, Drescher J, Eisenhauer N, Ellers J, Ferlian O, Ferreira SSD, Ferreira AS, Fiera C, Filser J, Franken O, Fujii S, Koudji EG, Gao M, Gendreau-Berthiaume B, Gers C, Greve M, Hamra-Kroua S, Handa IT, Hasegawa M, Heiniger C, Hishi T, Holmstrup M, Homet P, Høye TT, Ivask M, Jacques B, Janion-Scheepers C, Jochum M, Joimel S, Jorge BCS, Juceviča E, Kapinga EM, Kováč Ľ, Krab EJ, Krogh PH, Kuu A, Kuznetsova N, Lam WN, Lin D, Lindo Z, Liu AWP, Lu JZ, Luciáñez MJ, Marx MT, Mawan A, McCary MA, Minor MA, Mitchell GI, Moreno D, Nakamori T, Negri I, Nielsen UN, Ochoa-Hueso R, Oliveira Filho LCI, Palacios-Vargas JG, Pollierer MM, Ponge JF, Potapov MB, Querner P, Rai B, Raschmanová N, Rashid MI, Raymond-Léonard LJ, Reis AS, Ross GM, Rousseau L, Russell DJ, Saifutdinov RA, Salmon S, Santonja M, Saraeva AK, Sayer EJ, Scheunemann N, Scholz C, Seeber J, Shaw P, Shveenkova YB, Slade EM, Stebaeva S, Sterzynska M, Sun X, Susanti WI, Taskaeva AA, Tay LS, Thakur MP, Treasure AM, Tsiafouli M, Twala MN, Uvarov AV, Venier LA, Widenfalk LA, Widyastuti R, Winck B, Winkler D, Wu D, Xie Z, Yin R, Zampaulo RA, Zeppelini D, Zhang B, Zoughailech A, Ashford O, Klauberg-Filho O, Scheu S. Global fine-resolution data on springtail abundance and community structure. Sci Data 2024; 11:22. [PMID: 38172139 PMCID: PMC10764875 DOI: 10.1038/s41597-023-02784-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 11/23/2023] [Indexed: 01/05/2024] Open
Abstract
Springtails (Collembola) inhabit soils from the Arctic to the Antarctic and comprise an estimated ~32% of all terrestrial arthropods on Earth. Here, we present a global, spatially-explicit database on springtail communities that includes 249,912 occurrences from 44,999 samples and 2,990 sites. These data are mainly raw sample-level records at the species level collected predominantly from private archives of the authors that were quality-controlled and taxonomically-standardised. Despite covering all continents, most of the sample-level data come from the European continent (82.5% of all samples) and represent four habitats: woodlands (57.4%), grasslands (14.0%), agrosystems (13.7%) and scrublands (9.0%). We included sampling by soil layers, and across seasons and years, representing temporal and spatial within-site variation in springtail communities. We also provided data use and sharing guidelines and R code to facilitate the use of the database by other researchers. This data paper describes a static version of the database at the publication date, but the database will be further expanded to include underrepresented regions and linked with trait data.
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Affiliation(s)
- Anton M Potapov
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany.
- Institute of Biology, Leipzig University, Puschstrasse 4, 04103, Leipzig, Germany.
- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany.
| | - Ting-Wen Chen
- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
| | - Anastasia V Striuchkova
- Department of zoology and ecology, Institute of Biology and Chemistry, Moscow Pedagogical State University, Kibalchicha 6 B.3, Moscow, 129164, Russia
| | - Juha M Alatalo
- Environmental Science Center, Qatar University, Doha, Qatar
| | - Douglas Alexandre
- Department of Soil Science, Centre for Agriculture and Veterinary Science, Santa Catarina State University (UDESC-Lages), Lages, SC, Brazil
| | - Javier Arbea
- CEPA Camargo, c/ Ria de Solia 3, ch. 39, 39610, Astillero, Spain
| | - Thomas Ashton
- Forest Research, Northern Research Station, Roslin, Midlothian, Scotland, EH25 9SY, United Kingdom
| | - Frank Ashwood
- Forest Research, Northern Research Station, Roslin, Midlothian, Scotland, EH25 9SY, United Kingdom
| | - Anatoly B Babenko
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskij prospekt 33, 119071, Moscow, Russia
| | | | | | - Dilmar Baretta
- Department Animal Science, University of Santa Catarina (UDESC), Chapeco, SC, 89815-000, Brazil
| | - Andrew D Barnes
- Te Aka Mātuatua - School of Science, University of Waikato, Private Bag 3105, Hamilton, 3204, New Zealand
| | - Bruno C Bellini
- Department of Botany and Zoology, Federal University of Rio Grande do Norte, Natal, 59078-970, Brazil
| | - Mohamed Bendjaballah
- Laboratoire de Biosystématique et Ecologie des Arthropodes, Faculté des Sciences de la Nature et de la Vie, Université Frères Mentouri Constantine 1, 25000, Constantine, Algeria
| | - Matty P Berg
- Section Ecology and Evolution, A-LIFE, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
- Community and Conservation Ecology group, GELIFES, University of Groningen, PO Box 72, 9700 AB, Groningen, The Netherlands
| | - Verónica Bernava
- Administración de Parques Nacionales, Calle Gral. San Martín y Padre Torrez (N3366), San Antonio, Misiones, Argentina
| | - Stef Bokhorst
- Systems Ecology, A-LIFE, Faculty of Science, Vrije Universiteit, 1081 HV, Amsterdam, The Netherlands
| | - Anna I Bokova
- Department of zoology and ecology, Institute of Biology and Chemistry, Moscow Pedagogical State University, Kibalchicha 6 B.3, Moscow, 129164, Russia
| | - Thomas Bolger
- School of Biology and Environmental Science, University College Dublin, Belfield, Dublin, 4, Republic of Ireland
- Earth Institute, University College Dublin, Belfield, Dublin, 4, Ireland
| | - Mathieu Bouchard
- Department of wood and forest sciences, Université Laval, Québec, Qc, G1V 0A6, Canada
| | - Roniere A Brito
- Instituto de Biologia de Solo, Universidade Estadual da Paraíba, Rua Horácio Trajano de Oliveira, 666, João Pessoa/PB, 58071-160, Brazil
| | - Damayanti Buchori
- Department of Plant Protection, Bogor Agricultural University, Jalan Kamper, Kampus IPB Darmaga, 16680, Bogor, Indonesia
| | - Gabriela Castaño-Meneses
- Unidad Multidisciplinaria de Docencia e Investigación-Juriquilla, Facultad de Ciencias, Universidad Nacional Autónoma de México, Boulevard Juriquilla 3001, Juriquilla, Querétaro, 76230, México
| | - Matthieu Chauvat
- Univ Rouen Normandie, INRAE, ECODIV USC 1499, F-76000, Rouen, France
| | - Mathilde Chomel
- FiBL France, Research Institute of Organic Agriculture, pole bio - ecosite du val de Drome, 26400, Eurre, France
| | - Yasuko Chow
- Asian School of the Environment, Nanyang Technological University, 50 Nanyang Avenue, 639798, Singapore, Singapore
| | - Steven L Chown
- Securing Antarctica's Environmental Future, School of Biological Sciences, Monash University, Melbourne, Victoria, 3800, Australia
| | - Aimee T Classen
- Ecology and Evolutionary Biology Department, University of Michigan, Ann Arbor, Michigan, USA
- University of Michigan Biological Station, Pellston, Michigan, USA
| | - Jérôme Cortet
- CEFE, Université Paul-Valéry Montpellier 3, Université de Montpellier, CNRS, EPHE, IRD, route de Mende, 34000, Montpellier, France
| | - Peter Čuchta
- Institute of Soil Biology and Biogeochemistry, Biology Centre CAS, České Budějovice, Czech Republic
| | | | - Estevam C A De Lima
- Laboratório de Sistemática de Collembola e Conservação, Coleção de Referência de Fauna de Solo, Instituto de Biologia de Solo, Universidade Estadual da Paraíba, Campus V, Rua Horácio Trajano, 666, João Pessoa, Brazil
| | - Louis E Deharveng
- UMR7205, Museum national d'Histoire naturelle, 45 rue Buffon, 75005, Paris, France
| | - Enrique Doblas Miranda
- CREAF, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
- Universitat Autònoma de Barcelona, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
| | - Jochen Drescher
- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Puschstrasse 4, 04103, Leipzig, Germany
| | - Jacintha Ellers
- Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
| | - Olga Ferlian
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Puschstrasse 4, 04103, Leipzig, Germany
| | - Susana S D Ferreira
- Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
| | - Aila S Ferreira
- Laboratório de Sistemática de Collembola e Conservação, Coleção de Referência de Fauna de Solo, Instituto de Biologia de Solo, Universidade Estadual da Paraíba, Campus V, Rua Horácio Trajano, 666, João Pessoa, Brazil
| | - Cristina Fiera
- Institute of Biology Bucharest, Romanian Academy, Bucharest, Romania
| | - Juliane Filser
- University of Bremen, FB 02, UFT, General and Theoretical Ecology, Leobener Str. 6, D-28359, Bremen, Germany
| | - Oscar Franken
- Section Ecology and Evolution, A-LIFE, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
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- Department of Geography and Spatial Information Techniques, Ningbo University, 315211, Ningbo, China
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- Department of Environmental System Science, Faculty of Science and Engineering, Doshisha University, 1-3 Tatara Miyakodani, Kyotanabe, Kyoto, 610-0394, Japan
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- University of Applied Sciences and Arts of Western Switzerland, Geneva, 150 route de Presinge, 1254, Jussy, Switzerland
| | - Takuo Hishi
- Kyushu University Forest, Kyushu University, 394 Tsubakuro, Sasaguri, Fukuoka, 811-2415, Japan
| | - Martin Holmstrup
- Department of Ecoscience, Aarhus University, C.F. Møllers Allé 4, 8000, Aarhus C, Denmark
| | - Pablo Homet
- Departmento de Biogeoquímica, Ecología Vegetal y Microbiana/ Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), Consejo Superior de Investigaciones Científicas(CSIC), Avenida Reina Mercedes 10, 41012, Sevilla, Spain
| | - Toke T Høye
- Department of Ecoscience, Aarhus University, C.F. Møllers Allé 4, 8000, Aarhus C, Denmark
| | - Mari Ivask
- Tartu College, Tallinn University of Technology, Puiestee 78, 51008, Tartu, Estonia
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi Str. 5, Tartu, 51006, Estonia
| | - Bob Jacques
- Department of Life Sciences, Aberystwyth University, Cledwyn Building, Penglais Campus, Aberystwyth, SY23 3DD, Wales, UK
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- Department of Biological Sciences, University of Cape Town, Private Bag X3, Rondebosch, 7701, South Africa
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- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
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- Department of Global Change Ecology, Biocenter, University of Würzburg, John-Skilton-Strasse 4a, 97074, Würzburg, Germany
| | - Sophie Joimel
- Université Paris-Saclay, INRAE, AgroParisTech, UMR EcoSys, 91120, Palaiseau, France
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- Quantitative Ecology Lab, Department of Ecology, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, 91540-000, Brazil
| | - Edite Juceviča
- Institute of Biology, University of Latvia, O.Vācieša Street 4, Riga, LV-1004, Latvia
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- Agricultural University of Iceland, Hvanneyri, 311, Borgarbyggð, Iceland
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- Department of Zoology, Institute of Biology and Ecology, Faculty of Science, Pavol Jozef Šafárik University, Košice, Slovakia
| | - Eveline J Krab
- Department of Soil and Environment, Swedish University or Agricultural Sciences, 750 07, Uppsala, Sweden
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- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi Str. 5, Tartu, 51006, Estonia
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- Department of zoology and ecology, Institute of Biology and Chemistry, Moscow Pedagogical State University, Kibalchicha 6 B.3, Moscow, 129164, Russia
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- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
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- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Private Bag X1, Matieland, 7602, South Africa
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- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
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- Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2. Cantoblanco, 28049, Madrid, España
| | - Michael T Marx
- Institute of Zoology, Johannes Gutenberg University Mainz, 55128, Mainz, Germany
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- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
| | - Matthew A McCary
- Department of BioSciences, Rice University, Houston, TX, 77005, USA
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- Ecology & Zoology Group, School of Natural Sciences, Massey University, P.B, 11222, Palmerston North, New Zealand
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- Graduate School of Environment and Information Sciences, Yokohama National University, 79-7 Tokiwadai, Hodogaya, Yokohama, 240-8501, Japan
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- Department of Sustainable Crop Production (DI.PRO.VE.S.), Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122, Piacenza, Italy
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- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Sydney, NSW, 2751, Australia
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- Laboratorio de Ecología, Dept. Ecología y Recursos Naturales, Facultad de Cienicas, UNAM, Ave. Universidad 3000, Copilco, Coyoacán, 04510 CDMX, Mexico
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- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
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- Muséum National d'Histoire Naturelle, Department Adaptations du Vivant, UMR MECADEV, 4 avenue du Petit-Château, 91800, Brunoy, France
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- Department of zoology and ecology, Institute of Biology and Chemistry, Moscow Pedagogical State University, Kibalchicha 6 B.3, Moscow, 129164, Russia
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- Natural History Museum Vienna, 1. Zoology, Burgring 7, 1010, Vienna, Austria
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- Forest Research Institute of the Karelian Research Centre of the Russian Academy of Sciences11 Pushkinskaya St, 185910, Petrozavodsk, Karelia, Russia
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- Laboratoire de Biosystématique et Ecologie des Arthropodes, Faculté des Sciences de la Nature et de la Vie, Université Frères Mentouri Constantine 1, 25000, Constantine, Algeria
| | | | - Osmar Klauberg-Filho
- Department of Soil Science, Centre for Agriculture and Veterinary Science, Santa Catarina State University (UDESC-Lages), Lages, SC, Brazil
| | - Stefan Scheu
- Department of Animal Ecology, Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
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