Sand bar opening in a coastal lagoon (Iquipari) in the northern region of Rio De Janeiro State: hydrological and hydrochemical changes

Integrative miRNA-mRNA network analysis to identify crucial pathways of salinity adaptation in brain transcriptome of Labeo rohita

Introduction: Brain being the master regulator of the physiology of animal, the current study focuses on the gene expression pattern of the brain tissue with special emphasis on regulation of growth, developmental process of an organism and cellular adaptation of Labeo rohita against unfavourable environmental conditions. Methods: RNA-seq study was performed on collected brain samples at 8ppt salt concentration and analyzed for differential gene expression, functional annotation and miRNA-mRNA regulatory network. Results: We found that 2450 genes were having significant differential up and down regulation. The study identified 20 hub genes based on maximal clique centrality algorithm. These hub genes were mainly involved in various signaling pathways, energy metabolism and ion transportation. Further, 326 up and 1214 down regulated genes were found to be targeted by 7 differentially expressed miRNAs i.e., oni-miR-10712, oni-miR-10736, ssa-miR-221-3p, ssa-miR-130d-1-5p, ssa-miR-144-5p and oni-miR-10628. Gene ontology analysis of these differentially expressed genes led to the finding that these genes were involved in signal transduction i.e., calcium, FOXO, PI3K-AKT, TGF-β, Wnt and p53 signalling pathways. Differentially expressed genes were also involved in regulation of immune response, environmental adaptation i.e., neuroactive ligand-receptor interaction, ECM-receptor interaction, cell adhesion molecules and circadian entrainment, osmoregulation and energy metabolism, which are critical for salinity adaptation. Discussion: The findings of whole transcriptomic study on brain deciphered the miRNA-mRNA interaction patterns and pathways associated with salinity adaptation of L. rohita.

From ecological functions to ecosystem services: linking coastal lagoons biodiversity with human well-being

In this review we highlight the relevance of biodiversity that inhabit coastal lagoons, emphasizing how species functions foster processes and services associated with this ecosystem. We identified 26 ecosystem services underpinned by ecological functions performed by bacteria and other microbial organisms, zooplankton, polychaetae worms, mollusks, macro-crustaceans, fishes, birds, and aquatic mammals. These groups present high functional redundancy but perform complementary functions that result in distinct ecosystem processes. Because coastal lagoons are located in the interface between freshwater, marine and terrestrial ecosystems, the ecosystem services provided by the biodiversity surpass the lagoon itself and benefit society in a wider spatial and historical context. The species loss in coastal lagoons due to multiple human-driven impacts affects the ecosystem functioning, influencing negatively the provision of all categories of services (i.e., supporting, regulating, provisioning and cultural). Because animals' assemblages have unequal spatial and temporal distribution in coastal lagoons, it is necessary to adopt ecosystem-level management plans to protect habitat heterogeneity and its biodiversity, ensuring the provision of services for human well-being to multi-actors in the coastal zone.

Production Performance of Moina macrocopa (Straus 1820) (Crustacea, Cladocera) Cultured in Different Salinities: The Effect on Growth, Survival, Reproduction, and Fatty Acid Composition of the Neonates

Salinity is a known factor in shaping population dynamics and community structure through direct and indirect effects on aquatic ecosystems. Salinity changes further influence food webs through competition and predation. The responses of Moina macrocopa (Cladocera) collected from Setiu Wetland lagoon (Terengganu) was evaluated through manipulative laboratory experiments to understand the ability of M. macrocopa to tolerate high salinity stress. Specifically, the fatty acid composition, growth, survival, and reproduction of this cladocerans species was examined. Sodium chloride (NaCl) as used in the treatments water with the concentration 0, 4, 6, 8, 12, and 15 salinity. Fatty acid levels were determined using Gas Chromatography and Mass Spectrophotometry (GC-MS). The results indicated that optimal conditions produced the highest fatty acid content, especially the polyunsaturated fatty acid content, such as EPA (eicosapentaenoic acid), ALA (alpha-linoleic acid), ARA (arachidonic acid), and DHA (docosahexaenoic acid). Furthermore, M. macrocopa survival was best at salinity 0, with a percentage of 98%, whereas the opposite occurred at salinity 15, with approximately 20% of viable animals surviving. Besides, M. macrocopa also showed the highest reproduction rate at salinity 0 (e.g., average initial age of reproduction, 4.33 ± 0.58 days) compared with other salinities level. Interestingly, the difference in growth at different salinities was not evident, an unusual finding when considering adverse effects such as osmoregulation pressure on the organism. Based on the results, we conclude that M. macrocopa can only tolerate salinity below salinity 8 and cannot withstand stressful environmental conditions associated with salinities above 8.

Before-after environmental impact assessment of an artificial channel opening on a south-western Atlantic choked lagoon system

This study aimed to evaluate the human induced impact of a channel opening in a choked lagoon and attempted to establish the cause-effect links for the observed changes. The same lagoon system was sampled before and after the channel opening event, and the differences in fish and crustacean assemblages and environmental variables between these periods analysed. The opening of the artificial channel resulted in salinity increases, leading to a shift in species composition, favouring marine species and reducing abundance and diversity of previously dominant freshwater species. Furthermore, saltwater entrance into the choked lagoon caused an unexpected decrease in species richness and biomass, plus deterioration of ecosystem processes, reducing fishing capacity. The effects of salinity on the ecosystem vary depending on the ecosystem's composition and capacity to overcome salinity changes, thus specific monitoring projects are important strategies for developing coastal lagoon conservation management.

Sandbar-regulated hydrodynamic influences on river hydrochemistry at Mengabang Telipot River, Peninsular Malaysia

Influences of river hydrodynamic behaviours on hydrochemistry (salinity, pH, dissolved oxygen saturations and dissolved phosphorus) were evaluated through high spatial and temporal resolution study of a sandbar-regulated coastal river. River hydrodynamic during sandbar-closed event was characterized by minor dependency on tidal fluctuations, very gradual increase of water level and continual low flow velocity. These hydrodynamic behaviours established a hydrochemistry equilibrium, in which water properties generally were characterized by virtual absence of horizontal gradients while vertical stratifications were significant. In addition, the river was in high trophic status as algae blooms were visible. Conversely, river hydrodynamic in sandbar-opened event was tidal-controlled and showed higher flow velocity. Horizontal gradients of water properties became significant while vertically more homogenised and with lower trophic status. In essence, this study reveals that estuarine sandbar directly regulates river hydrodynamic behaviours which in turn influences river hydrochemistry.

Spatiotemporal variation of bacterial community composition and possible controlling factors in tropical shallow lagoons

Bacterial community composition (BCC) has been extensively related to specific environmental conditions. Tropical coastal lagoons present great temporal and spatial variation in their limnological conditions, which, in turn, should influence the BCC. Here, we sought for the limnological factors that influence, in space and time, the BCC in tropical coastal lagoons (Rio de Janeiro State, Brazil). The Visgueiro lagoon was sampled monthly for 1 year and eight lagoons were sampled once for temporal and spatial analysis, respectively. BCC was evaluated by bacteria-specific PCR-DGGE methods. Great variations were observed in limnological conditions and BCC on both temporal and spatial scales. Changes in the BCC of Visgueiro lagoon throughout the year were best related to salinity and concentrations of NO (3) (-) , dissolved phosphorus and chlorophyll-a, while changes in BCC between lagoons were best related to salinity and dissolved phosphorus concentration. Salinity has a direct impact on the integrity of the bacterial cell, and it was previously observed that phosphorus is the main limiting nutrient to bacterial growth in these lagoons. Therefore, we conclude that great variations in limnological conditions of coastal lagoons throughout time and space resulted in different BCCs and salinity and nutrient concentration, particularly dissolved phosphorus, are the main limnological factors influencing BCC in these tropical coastal lagoons.

Temporal and spatial fluctuations of phytoplankton in a tropical coastal lagoon, southeast Brazil

Spatial and temporal variability of the phytoplankton community in the tropical coastal Imboassica lagoon, an environment naturally isolated from the ocean by a narrow sandbar, was analysed every two weeks for 19 months by sampling three sites. During this study, the lagoon received direct input of marine water three times, resulting in remarkable salinity, nutrient concentrations and phytoplankton biomass variations in both temporal and spatial aspects. The phytoplankton biomass presented relatively low values ranging, on average, from 0.54 mg.L-1 in the station closest to the sea (station 1) to 1.34 mg.L-1 in the station close to a macrophyte bank (station 3). Diatoms and cryptomonads dominated in stations 1 and 2 (located relatively close to station 1, yet receiving the runoff of domestic sewage), and euglenoids, cryptomonads and dinoflagellates at station 3. Stations 1 and 2 usually presented the same dominant species but station 2 presented a higher phytoplankton biomass. On the other hand, station 3 showed more similar results concerning phytoplankton biomass with station 2, however the dominant species were usually different. The high fluctuations of salinity and the reduced nutrient availability are pointed out as the main factors structuring the dynamics of the phytoplankton community at the Imboassica lagoon.

Environmental changes and zooplankton temporal and spatial variation in a disturbed brazilian coastal lagoon

The Imboassica lagoon, located in the Municipality of Macaé (RJ), is separated from the sea by a sand bar, and its surroundings are partially occupied by residential areas. This coastal lagoon has undergone environmental degradation due to sewage input and artificial sand bar openings. The temporal and spatial variation of environmental variables and zooplankton were studied monthly for four years. There were five artificial openings of the sand bar during the period of study, mostly in the rainy season. Besides osmotic changes, these events caused the drainage of the water of the lagoon into the sea, loss of total organic nitrogen, and an increase of total phosphorus. The zooplankton community of Imboassica lagoon included freshwater and marine taxa, holoplanktonic, meroplanktonic and nectobenthonic forms. Polychaeta, Bivalvia and Gastropoda larvae, and the taxa of Rotifera Hexarthra spp., Lecane bulla, Synchaeta bicornis, nauplii of Cyclopoida and Calanoida copepods were considered constant taxa. Distinct zooplankton assemblages were found during zooplankton spatial surveys in oligohaline and mesohaline conditions. The successful zooplankton populations were either favored by the disturbance of the sand bar opening, such as the veligers of the gastropod Heleobia australis, or capable of fast recovery after the closing of the sand bar, during the succession from a marine into an oligohaline environment, such as Hexarthra spp.. Such populations seemed well adapted to the stress conditions usually found in the lagoon due to osmotic changes, column mixing, nutrient input, and high fish predation pressure. Rare species in the community, such as Moina minuta, presented population increases all over the lagoon under oligohaline conditions.

Spatio-temporal fluxes in particulate organic carbon in a tropical coastal lagoon

Temporal and spatial variations in particulate organic carbon (POC) in relation to primary production, chlorophyll a, phaeophytin, plankton abundance, secondary production and suspended particulate matter (SPM) were studied monthly for 1 year from April 1996 to March 1997 in a shallow tropical coastal lagoon on the southwest coast of India. Though temporal variations in all components were significant, spatial variabilities were not statistically significant. POC values range from 200 to 5690 mg C m(3) h(-1), while primary production, chlorophyll a, and phaeophytin varied between 0.02 and 14.53 mg C m(-3) h(-1), 0.87 and 23.11 mg m(-3) and 3.02 and 30.581 mg m(-3), respectively. Phytoplankton and zooplankton abundance varied from 0.01 to 655.5 x 10(5) no m(-3) and negligible to 7.08 x 10(5) no m(-3) respectively; secondary production from 10 to 490 mg C m(-3) and SPM between 0.38 and 74.43 x 10(4) mg m(-3) during this study. Temporally, postmonsoon months were observed to have the highest concentrations of POC in the lagoon waters. The bulk of the POC pool in the lagoon was composed of secondary producers (72%), followed by chlorophyll a (21%), phaeophytin (7%) and suspended particulate matter of inorganic origin (< 0.1%).

Seasonal hydrochemical variation in a tropical coastal lagoon (Açu Lagoon, Brazil)

Hydrochemical conditions in the Açu Lagoon are described using spatial and temporal variations of various limnological variables (water temperature, dissolved oxygen, electric conductivity, total alkalinity, carbon dioxide, dissolved and total nutrients (N, P and Si), and chlorophyll a). Collected data was used in order to understand the structure and functioning of an enclosed coastal lagoon strongly influenced by climatic conditions. Water samples were collected monthly (November 1999-December 2000) in five sampling stations established along the lagoon. A decreasing spatial gradient of electrical conductivity was observed beginning from a sand bar region between the lagoon and the sea in the direction of the sweet-water input area. The positive correlation observed between the pH and dissolved oxygen (DO) values, and the negative one observed between pH values and those of carbon dioxide (CO2), evidenced coupled biological processes, e.g., primary production and decomposition. Both spatial and temporal variation of dissolved nutrients showed fast increase and decrease in the beginning of summer, suggesting that nutrient input resulting from rainfall stimulates phytoplankton production, as reflected by chlorophyll a concentration increase.