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Di Girolamo EL, Jordan MA, Albers G, Bergeson SM. Comparing the effectiveness of environmental DNA and camera traps for surveying American mink (Neogale vison) in northeastern Indiana. PLoS One 2024; 19:e0310888. [PMID: 39312555 PMCID: PMC11419345 DOI: 10.1371/journal.pone.0310888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Accepted: 09/09/2024] [Indexed: 09/25/2024] Open
Abstract
While camera traps can effectively detect semi-aquatic mammal species, they are also often temporally and monetarily inefficient and have a difficult time detecting smaller bodied, elusive mammals. Recent studies have shown that extracting DNA from environmental samples can be a non-invasive, alternative method of detecting elusive species. Environmental DNA (eDNA) has not yet been used to survey American mink (Neogale vison), a cryptic and understudied North American mustelid. To help determine best survey practices for the species, we compared the effectiveness and efficiency of eDNA and camera traps in surveys for American mink. We used both methods to monitor the shoreline of seven bodies of water in northeastern Indiana from March to May 2021. We extracted DNA from filtered environmental water samples and used quantitative real-time PCR to determine the presence of mink at each site. We used Akaike's Information Criterion to rank probability of detection models with and without survey method as a covariate. We detected mink at four of the seven sites and seven of the 21 total survey weeks using camera traps (probability of detection (ρ) = 0.36). We detected mink at five sites and during five survey weeks using eDNA (ρ = 0.25). However, the highest probability of detection was obtained when both methods were combined, and data were pooled (ρ = 0.47). Survey method did not influence model fit, suggesting no difference in detectability between camera traps and eDNA. Environmental DNA was twice as expensive, but only required a little over half (58%) of the time when compared to camera trapping. We recommend ways in which an improved eDNA methodology may be more cost effective for future studies. For this study, a combination of both methods yielded the highest probability for detecting mink presence.
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Affiliation(s)
- Eleanor L. Di Girolamo
- Department of Biological Sciences, Purdue University Fort Wayne, Fort Wayne, Indiana, United States of America
| | - Mark A. Jordan
- Department of Biological Sciences, Purdue University Fort Wayne, Fort Wayne, Indiana, United States of America
| | - Geriann Albers
- Division of Fish and Wildlife, Indiana Department of Natural Resources, Bloomington, Indiana, United States of America
| | - Scott M. Bergeson
- Department of Biological Sciences, Purdue University Fort Wayne, Fort Wayne, Indiana, United States of America
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Wang L, Zhou S, Lyu T, Shi L, Dong Y, He S, Zhang H. Comparative Genome Analysis Reveals the Genomic Basis of Semi-Aquatic Adaptation in American Mink (Neovison vison). Animals (Basel) 2022; 12:ani12182385. [PMID: 36139245 PMCID: PMC9494948 DOI: 10.3390/ani12182385] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 08/23/2022] [Accepted: 09/09/2022] [Indexed: 11/22/2022] Open
Abstract
Simple Summary In nature, every animal lives in its suitable environment to support life and reproduction. Due to survival pressure, the ancient ancestors of land animals changed from living in water to living on land through a long time of evolution. But as more and more animals live on land, the pressure to survive increases, and some animals continue to evolve and re-enter the water. Species evolved from water to land, fins became limbs, and re-entering organisms evolved webbing, all in an effort to better adapt to their environment. The American mink’s life is extremely dependent on the water environment, but its external changes are less pronounced than those of other water-dependent animals. Since the limited external changes are not sufficient to indicate that the American mink is a semi-aquatic mammal, we can explore the evidence of aquatic adaptation at the molecular level. Through comparative genomic analysis, we obtained that American mink has certain adaptive evolution to aquatic environment in olfactory, coagulation, immunity and other aspects. The results of this study have important reference significance for exploring biological evolution and species conservation. Abstract Although the American mink is extremely dependent on water and has evolved a range of aquatic characteristics, its structural adaptation to water is still less obvious than that of other typical semi-aquatic mammals, such as otters. Therefore, many scholars consider it not to be a semi-aquatic mammal. In order to make the point that minks are semi-aquatic mammals more convincing, we provide evidence at the micro (genome)-level. In particular, we used the genomes of the American mink and 13 mammalian species to reconstruct their evolutionary history, identified genes that affect aquatic adaptation, and examined the evolution of aquatic adaptation. By analyzing unique gene families, the expansion and contraction of gene families, and positive selection genes, we found that the American mink genome has evolved specifically for aquatic adaptation. In particular, we found that the main adaptive characteristics of the American mink include the external structural characteristics of bone and hair development, as well as the internal physiological characteristics of immunity, olfaction, coagulation, lipid metabolism, energy metabolism, and nitrogen metabolism. We also observed that the genomic characteristics of the American mink are similar to those of other aquatic and semi-aquatic mammals. This not only provides solid genomic evidence for the idea that minks are semi-aquatic mammals, but also leads to a clearer understanding of semi-aquatic species. At the same time, this study also provides a reference for the protection and utilization of the American mink.
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Affiliation(s)
- Lidong Wang
- College of Life Sciences, Qufu Normal University, Qufu 273165, China
| | - Shengyang Zhou
- College of Life Sciences, Qufu Normal University, Qufu 273165, China
| | - Tianshu Lyu
- College of Wildlife and Protected Area, Northeast Forestry University, Harbin 150040, China
| | - Lupeng Shi
- College of Life Sciences, Qufu Normal University, Qufu 273165, China
| | - Yuehuan Dong
- College of Life Sciences, Qufu Normal University, Qufu 273165, China
| | - Shangbin He
- College of Life Sciences, Qufu Normal University, Qufu 273165, China
| | - Honghai Zhang
- College of Life Sciences, Qufu Normal University, Qufu 273165, China
- Correspondence:
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Gusztak RW, MacArthur RA, Campbell KL. Dive performance and aquatic thermoregulation of the world’s smallest mammalian diver, the American water shrew (Sorex palustris). Physiol Biochem Zool 2022; 95:438-463. [DOI: 10.1086/721186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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4
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Tavares WC, Coutinho LC, Oliveira JA. Locomotor habits and phenotypic evolution of the appendicular skeleton in the oryzomyalian radiation in the Neotropics (Sigmodontinae, Cricetidae, Rodentia). J ZOOL SYST EVOL RES 2021. [DOI: 10.1111/jzs.12551] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- William Corrêa Tavares
- Núcleo Multidisciplinar de Pesquisa em Biologia—NUMPEX‐BIO Campus Duque de Caxias Professor Geraldo Cidade Universidade Federal do Rio de Janeiro Duque de Caxias Brazil
- Programa de Pós‐Graduação em Biodiversidade e Biologia Evolutiva Instituto de Biologia Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil
| | - Ludmilla Carvalho Coutinho
- Programa de Pós‐Graduação em Biodiversidade e Biologia Evolutiva Instituto de Biologia Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil
- Setor de Mastozoologia Departamento de Vertebrados Museu Nacional Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil
| | - João Alves Oliveira
- Programa de Pós‐Graduação em Biodiversidade e Biologia Evolutiva Instituto de Biologia Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil
- Setor de Mastozoologia Departamento de Vertebrados Museu Nacional Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil
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Schüttler E, Crego RD, Saavedra-Aracena L, Silva-Rodríguez EA, Rozzi R, Soto N, Jiménez JE. New records of invasive mammals from the sub-Antarctic Cape Horn Archipelago. Polar Biol 2019. [DOI: 10.1007/s00300-019-02497-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Houssaye A, Botton-Divet L. From land to water: evolutionary changes in long bone microanatomy of otters (Mammalia: Mustelidae). Biol J Linn Soc Lond 2018. [DOI: 10.1093/biolinnean/bly118] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Alexandra Houssaye
- UMR 7179 CNRS/Muséum national d’Histoire naturelle, Département Adaptations du vivant, Paris, France
| | - Léo Botton-Divet
- UMR 7179 CNRS/Muséum national d’Histoire naturelle, Département Adaptations du vivant, Paris, France
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Tavares WC, Abi-Rezik P, Seuánez HN. Historical and ecological influence in the evolutionary diversification of external morphology of neotropical spiny rats (Echimyidae, Rodentia). J ZOOL SYST EVOL RES 2018. [DOI: 10.1111/jzs.12215] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- William Corrêa Tavares
- Laboratório de Mastozoologia; Departamento de Zoologia; CCS; Rio de Janeiro Brazil
- Departamento de Genética; CCS; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
- Programa de Genética; Instituto Nacional de Câncer; Rio de Janeiro Brazil
| | - Pedro Abi-Rezik
- Laboratório de Mastozoologia; Departamento de Zoologia; CCS; Rio de Janeiro Brazil
| | - Hector N. Seuánez
- Departamento de Genética; CCS; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
- Programa de Genética; Instituto Nacional de Câncer; Rio de Janeiro Brazil
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Graf PM, Wilson RP, Sanchez LC, Hacklӓnder K, Rosell F. Diving behavior in a free-living, semi-aquatic herbivore, the Eurasian beaver Castor fiber. Ecol Evol 2018; 8:997-1008. [PMID: 29375773 PMCID: PMC5773300 DOI: 10.1002/ece3.3726] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 11/10/2017] [Accepted: 11/15/2017] [Indexed: 11/09/2022] Open
Abstract
Semi-aquatic mammals have secondarily returned to the aquatic environment, although they spend a major part of their life operating in air. Moving both on land, as well as in, and under water is challenging because such species are considered to be imperfectly adapted to both environments. We deployed accelerometers combined with a depth sensor to study the diving behavior of 12 free-living Eurasian beavers Castor fiber in southeast Norway between 2009 and 2011 to examine the extent to which beavers conformed with mass-dependent dive capacities, expecting them to be poorer than wholly aquatic species. Dives were generally shallow (<1 m) and of short duration (<30 s), suggesting that the majority of dives were aerobic. Dive parameters such as maximum diving depth, dive duration, and bottom phase duration were related to the effort during different dive phases and the maximum depth reached. During the descent, mean vectorial dynamic body acceleration (VeDBA-a proxy for movement power) was highest near the surface, probably due to increased upthrust linked to fur- and lung-associated air. Inconsistently though, mean VeDBA underwater was highest during the ascent when this air would be expected to help drive the animals back to the surface. Higher movement costs during ascents may arise from transporting materials up, the air bubbling out of the fur, and/or the animals' exhaling during the bottom phase of the dive. In a manner similar to other homeotherms, beavers extended both dive and bottom phase durations with diving depth. Deeper dives tended to have a longer bottom phase, although its duration was shortened with increased VeDBA during the bottom phase. Water temperature did not affect diving behavior. Overall, the beavers' dive profile (depth, duration) was similar to other semi-aquatic freshwater divers. However, beavers dived for only 2.8% of their active time, presumably because they do not rely on diving for food acquisition.
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Affiliation(s)
- Patricia Maria Graf
- Institute of Wildlife Biology and Game Management University of Natural Resources and Life Sciences Vienna Austria.,Department of Natural Sciences and Environmental Health Faculty of Technology, Natural Sciences and Maritime Sciences University College of Southeast Norway Telemark Norway
| | | | - Lea Cohen Sanchez
- Institute of Geography School of Geoscience University of Edinburgh Edinburgh UK
| | - Klaus Hacklӓnder
- Institute of Wildlife Biology and Game Management University of Natural Resources and Life Sciences Vienna Austria
| | - Frank Rosell
- Department of Natural Sciences and Environmental Health Faculty of Technology, Natural Sciences and Maritime Sciences University College of Southeast Norway Telemark Norway
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Tavares WC, Pessôa LM, Seuánez HN. Phylogenetic and size constrains on cranial ontogenetic allometry of spiny rats (Echimyidae, Rodentia). J Evol Biol 2016; 29:1752-65. [DOI: 10.1111/jeb.12905] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2015] [Revised: 03/08/2016] [Accepted: 05/23/2016] [Indexed: 11/30/2022]
Affiliation(s)
- W. C. Tavares
- Departamento de Zoologia; CCS; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
- Programa de Genética; Instituto Nacional de Câncer; Rio de Janeiro Brazil
- Departamento de Genética; CCS; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
| | - L. M. Pessôa
- Departamento de Zoologia; CCS; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
| | - H. N. Seuánez
- Programa de Genética; Instituto Nacional de Câncer; Rio de Janeiro Brazil
- Departamento de Genética; CCS; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
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López-Cruz RI, Pérez-Milicua MB, Crocker DE, Gaxiola-Robles R, Bernal-Vertiz JA, de la Rosa A, Vázquez-Medina JP, Zenteno-Savín T. Purine nucleoside phosphorylase and xanthine oxidase activities in erythrocytes and plasma from marine, semiaquatic and terrestrial mammals. Comp Biochem Physiol A Mol Integr Physiol 2014; 171:31-5. [PMID: 24530799 DOI: 10.1016/j.cbpa.2014.02.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2013] [Revised: 01/29/2014] [Accepted: 02/03/2014] [Indexed: 01/23/2023]
Abstract
Purine nucleoside phosphorylase (PNP) and xanthine oxidase (XO) are key enzymes involved in the purine salvage pathway. PNP metabolizes purine bases to synthetize purine nucleotides whereas XO catalyzes the oxidation of purines to uric acid. In humans, PNP activity is reported to be high in erythrocytes and XO activity to be low in plasma; however, XO activity increases after ischemic events. XO activity in plasma of northern elephant seals has been reported during prolonged fasting and rest and voluntary associated apneas. The objective of this study was to analyze circulating PNP and XO activities in marine mammals adapted to tolerate repeated cycles of ischemia/reperfusion associated with diving (bottlenose dolphin, northern elephant seal) in comparison with semiaquatic (river otter) and terrestrial mammals (human, pig). PNP activities in plasma and erythrocytes, as well as XO activity in plasma, from all species were quantified by spectrophotometry. No clear relationship in circulating PNP or XO activity could be established between marine, semiaquatic and terrestrial mammals. Erythrocytes from bottlenose dolphins and humans are highly permeable to nucleosides and glucose, intraerythrocyte PNP activity may be related to a release of purine nucleotides from the liver. High-energy costs will probably mean a higher ATP degradation rate in river otters, as compared to northern elephant seals or dolphins. Lower erythrocyte PNP activity and elevated plasma XO activity in northern elephant seal could be associated with fasting and/or sleep- and dive-associated apneas.
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Affiliation(s)
- Roberto I López-Cruz
- Centro de Investigaciones Biológicas del Noroeste, S.C., Programa de Planeación Ambiental y Conservación, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico.
| | - Myrna Barjau Pérez-Milicua
- Centro de Investigaciones Biológicas del Noroeste, S.C., Programa de Planeación Ambiental y Conservación, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico.
| | - Daniel E Crocker
- Sonoma State University, Department of Biology, 1801 E. Cotati Ave., Rohnert Park, CA 94928, USA.
| | - Ramón Gaxiola-Robles
- Centro de Investigaciones Biológicas del Noroeste, S.C., Programa de Planeación Ambiental y Conservación, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico; Hospital General de Zona No.1. Instituto Mexicano del Seguro Social, La Paz, Baja California Sur, Mexico.
| | - Jaime A Bernal-Vertiz
- Cabo Dolphins, Paseo de la Marina 7A, Cabo San Lucas, Baja California Sur, C.P. 23410, Mexico.
| | - Alejandro de la Rosa
- Acuario de Veracruz A.C., Departamento de Mamíferos Acuáticos, Aves y Reptiles, Veracruz, Veracruz, Mexico.
| | - José P Vázquez-Medina
- Institute for Environmental Medicine, Perelman School of Medicine, University of Pennsylvania, 1 John Morgan Building, 3620 Hamilton Walk, Philadelphia, PA 19104, USA.
| | - Tania Zenteno-Savín
- Centro de Investigaciones Biológicas del Noroeste, S.C., Programa de Planeación Ambiental y Conservación, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico.
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Mirceta S, Signore AV, Burns JM, Cossins AR, Campbell KL, Berenbrink M. Evolution of mammalian diving capacity traced by myoglobin net surface charge. Science 2013; 340:1234192. [PMID: 23766330 DOI: 10.1126/science.1234192] [Citation(s) in RCA: 125] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Extended breath-hold endurance enables the exploitation of the aquatic niche by numerous mammalian lineages and is accomplished by elevated body oxygen stores and adaptations that promote their economical use. However, little is known regarding the molecular and evolutionary underpinnings of the high muscle myoglobin concentration phenotype of divers. We used ancestral sequence reconstruction to trace the evolution of this oxygen-storing protein across a 130-species mammalian phylogeny and reveal an adaptive molecular signature of elevated myoglobin net surface charge in diving species that is mechanistically linked with maximal myoglobin concentration. This observation provides insights into the tempo and routes to enhanced dive capacity evolution within the ancestors of each major mammalian aquatic lineage and infers amphibious ancestries of echidnas, moles, hyraxes, and elephants, offering a fresh perspective on the evolution of this iconic respiratory pigment.
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Affiliation(s)
- Scott Mirceta
- Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK
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Brandt C, Malmkvist J, Nielsen RL, Brande-Lavridsen N, Surlykke A. Development of vocalization and hearing in American mink (Neovison vison). ACTA ACUST UNITED AC 2013; 216:3542-50. [PMID: 23788707 DOI: 10.1242/jeb.080226] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
American mink (Neovison vison) kits are born altricial and fully dependent on maternal care, for which the kits' vocalizations appear essential. We used auditory brainstem responses (ABRs) to determine: (1) hearing sensitivity of adult females from two breeding lines known to differ in maternal behaviour and (2) development of hearing in kits 8-52 days of age. We also studied sound production in 20 kits throughout postnatal days 1 to 44. Adult female mink had a broad hearing range from 1 kHz to above 70 kHz, with peak sensitivity (threshold of 20 dB SPL) at 8-10 kHz, and no difference in sensitivity between the two breeding lines (P>0.22) to explain the difference in maternal care. Mink kits showed no signs of hearing up to postnatal day 24. From day 30, all kits had ABRs indicative of hearing. Hearing sensitivity increased with age, but was still below the adult level at postnatal day 52. When separated from their mothers, kits vocalized loudly. Until the age of 22 days, 90% of all kits vocalized with no significant decline with age (P=0.27). From day 25, concurrent with the start of hearing, the number of vocalizing kits decreased with age (P<0.001), in particular in kits that were re-tested (P=0.004). Large numbers of mink are kept in fur industry farms, and our results are important to the understanding of sound communication, which is part of their natural behaviour. Our results also suggest mink as an interesting model for studying the development of mammalian hearing and its correlation to sound production.
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Affiliation(s)
- Christian Brandt
- Institute of Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.
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Bagniewska JM, Hart T, Harrington LA, Macdonald DW. Hidden Markov analysis describes dive patterns in semiaquatic animals. Behav Ecol 2013. [DOI: 10.1093/beheco/ars217] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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