Colonization of mudflat substrate by microarthropods: the role of distance, inundation frequency and body size

Salt marshes represent a unique ecosystem at the marine-terrestrial boundary of shallow protected coastlines. Microarthropods form an essential component of soil food webs, but how they colonize new intertidal habitats is little understood. By establishing two experimental systems without animals, we investigated microarthropod colonization (1) at the seashore from the pioneer zone to the lower and upper salt marsh and (2) at the same tidal height on artificial islands 500 m from the seashore. Potential source populations of microarthropods in the respective zones were also investigated. Colonization of microarthropods after 5 years was consistently faster on the seashore than on the artificial islands. Collembola and Mesostigmata colonized all the zones both on the seashore and on the artificial islands, with colonization being faster in the upper salt marsh and in the pioneer zone than in the lower salt marsh. Oribatida colonized the new habitats on the seashore, but only little on the artificial islands. Variations in species composition were more pronounced between salt marsh zones than between experimental systems, indicating that local environmental conditions (i.e., inundation frequency) are more important for the assembly of microarthropod communities than the distance from source populations (i.e., dispersal processes). Variations in community body size of Oribatida and Mesostigmata indicated environmental filtering of traits, with smaller species suffering from frequent inundations. Notably, Mesostigmata most successfully colonized the new habitats across salt marsh zones on both systems. Overall, the results document major mechanisms of colonization of intertidal habitats by microarthropods with different life histories and feeding strategies.

A large-scale field experiment across six rivers illustrates how the effects of resource enrichment are context dependent

Resource supplementation can increase species richness and change the faunal composition of communities, but experiments have produced variable outcomes. An often overlooked element is that species richness can only increase if new taxa can disperse to resource-rich locations and invade established, local communities. We experimentally increased a basal resource (detritus) in six rivers in south-eastern Australia by driving wooden stakes into the riverbed to increase retention of detritus. Control sites were left untreated. Sites were located in agricultural sections with mostly cleared vegetation, but with intact (uncleared) reference sites upstream to provide sources of prospective colonists. We measured channel retentiveness and sampled benthic detritus and invertebrates before and after manipulation. We tested whether: greater retentiveness increased detritus densities, species richness and abundances and altered faunal composition; manipulation sites reached bio-equivalence with reference sites; new species arose from upstream reference areas; and whether outcomes were consistent across rivers. Only three rivers gained increases in detritus densities. All had low pre-existing amounts of in-stream wood compared with rivers that did not respond to treatment. Two rivers (Hughes Creek, Seven Creeks) gained higher species richness and invertebrate densities within 12 months and reached bio-equivalence with reference sites. In contrast, Turtons Creek showed species turnover through replacement of individuals. Only in Hughes Creek was there evidence of successful dispersal from the upstream reference area. The outcomes show that the effects of resource supplementation vary between rivers and suggest that pre-existing conditions (e.g. channel retentiveness) may cause these differences, providing clear evidence of context dependence.

Caves as wildlife refuges in degraded landscapes in the Brazilian Amazon

Cross-habitat spillover may be the outcome of a process of habitat loss or degradation where the receiving habitat serves as a refuge for organisms. Once surface habitats are lost or degraded, animals can find underground refuge in caves. This paper is focused on testing whether taxonomic order richness inside caves is positively affected by the loss of the native vegetation cover surrounding caves; whether degradation of native vegetation cover predicts cave community composition; and whether there is a pattern of cave community clusters delimited by similarity in the effects of habitat degradation on animal communities. We gathered a comprehensive speleological dataset consisting of occurrence data of thousands of invertebrates and vertebrates sampled in 864 iron caves in the Amazon, to test the effects of both variables measured inside caves and surrounding landscapes on spatial variation in richness and composition of animal communities. We show that caves can work as refuges for the fauna in landscapes where the native vegetation cover surrounding them was degraded, which was evidenced by landcover change increasing the richness of cave communities and clustering caves by similarity in community composition. Therefore, habitat degradation on the surface should be a key variable when characterizing cave ecosystems for conservation prioritization and offset planning. Habitat degradation causing a cross-habitat spillover effect highlights the importance of maintaining the connection between caves by the surface, especially large caves. Our study can help guide industry and stakeholders working on the complex conciliation between land use and biodiversity conservation.

Mapping global conservation priorities and habitat vulnerabilities for cave-dwelling bats in a changing world

Research and media attention is disproportionately focused on taxa and ecosystems perceived as charismatic, while other equally diverse systems such as caves and subterranean ecosystems are often neglected in biodiversity assessments and prioritisations. Highlighting the urgent need for protection, an especially large fraction of cave endemic species may be undescribed. Yet these more challenging systems are also vulnerable, with karsts for example losing a considerable proportion of their area each year. Bats are keystone to cave ecosystems making them potential surrogates to understand cave diversity patterns and identify conservation priorities. On a global scale, almost half (48 %) of known bat species use caves for parts of their life histories, with 32 % endemic to a single country, and 15 % currently threatened. We combined global analysis of cave bats from the IUCN spatial data with site-specific analysis of 1930 bat caves from 46 countries to develop global priorities for the conservation of the most vulnerable subterranean ecosystems. Globally, 28 % of caves showed high bat diversity and were highly threatened. The highest regional concentration of conservation priority caves was in the Palearctic and tropical regions (except the Afrotropical, which requires more intensive cave data sampling). Our results further highlight the importance of prioritising bat caves by incorporating locally collected data and optimising parameter selection (i.e., appropriate landscape features and threats). Finally, to protect and conserve these ecosystems it is crucial that we use frameworks such as this to identify priorities in species and habitat-level and map vulnerable underground habitats with the highest biodiversity and distinctiveness.

Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils

Subterranean environments host a substantial amount of biodiversity, however assessing the distribution of species living underground is still extremely challenging. Environmental DNA (eDNA) metabarcoding is a powerful tool to estimate biodiversity in poorly known environments and has excellent performance for soil organisms. Here, we tested 1) whether eDNA metabarcoding from cave soils/sediments allows to successfully detect springtails (Hexapoda: Collembola) and insects (Hexapoda: Insecta); 2) whether eDNA mostly represents autochthonous (cave-dwelling) organisms or it also incorporates information from species living in surface environments; 3) whether eDNA detection probability changes across taxa with different ecology. Environmental DNA metabarcoding analyses detected a large number of Molecular Operational Taxonomic Units (MOTUs) for both insects and springtails. For springtails, detection probability was high, with a substantial proportion of hypogean species, suggesting that eDNA provides good information on the distribution of these organisms in caves. Conversely, for insects most of MOTUs represented taxa living outside caves, and the majority of them represented taxa/organisms living in freshwater environments (Ephemeroptera, Plecoptera and Trichoptera). The eDNA of freshwater insects was particularly abundant in deep sectors of caves, far from the entrance. Furthermore, average detection probability of insects was significantly lower than the one of springtails. This suggests that cave soils/sediments act as "conveyer belts of biodiversity information", possibly because percolating water lead to the accumulation of eDNA of organisms living in nearby areas. Cave soils hold a complex mix of autochthonous and allochthonous eDNA. eDNA provided unprecedented information on the understudied subterranean cave organisms; analyses of detection probability and occupancy can help teasing apart local eDNA from the eDNA representing spatially-integrated biodiversity for whole landscape.

Longevity in Cave Animals

An extraordinary longevity has been observed in some cave species, and this raised the hypothesis that a longer lifespan may be considered one of the characteristic traits of these animals. However, only a few cave species have been studied thus far, and a firm conclusion remains to be drawn. Here we review the available knowledge on the longevity of subterranean species, point out the limitations of previous studies, and provide suggestions for future studies to answer important questions regarding the longevity in cave animals, its adaptive value and the related promoting factors. We also argue that studying the longevity in cave animals will contribute to the field of aging, especially to understanding the evolution of this phenomenon.

The relationship between urban refuse with fecundity and nestlings' success of a generalist seabird in the Río de la Plata Estuary - Uruguay

Resource acquisition and allocation impacts individual fitness. Using pellet analysis of breeding adults and stable isotopes of carbon and nitrogen of down feathers of Kelp Gull (Larus dominicanus) nestlings, we evaluated the relationship between urban refuse (beef and chicken) and natural food (fish) consumption of individual females during the pre-incubation period, with fecundity and young nesting's success in the Río de la Plata Estuary in Uruguay. Assimilated urban refuse positively correlated with egg weight and negatively with young nestling's success. This suggests a possible impact of urban refuse foraged by females during the pre-incubation period on their immediate fecundity (positively) and young nestling's survival (negatively). Differences between studies at the individual and colony levels are also discussed in light of an "ecological fallacy" of interpretation and we thus argue for the need of additional research to evaluate this relationship further, considering potential confounding factors.

Don’t forget the vertical dimension: assessment of distributional dynamics of cave-dwelling invertebrates in both ground and parietal microhabitats

Biological studies on factors shaping underground communities are poor, especially those considering simultaneously organisms with different degrees of adaptation to cave life. In this study, we assessed the annual dynamics and use of both horizontal and vertical microhabitats of a whole community with the aim of understanding whether cave-dwelling organisms have a similar distribution among vertical and ground-level microhabitats and to find out which microhabitat features influence such distribution. We monthly assessed from 2017 to 2018, by direct observation combined with quadrat sampling method on the ground and transects on the walls, richness and abundance of 62 cave-dwelling species in a cave of Northern Italy. Environmental factors such as light intensity, temperature, relative humidity and mineralogical composition of the substrates were measured during each monitoring session, influencing the dynamics of the whole community and revealing significant differences between ground and wall microhabitats. A gradient of variation of the species assemblages occurred from the entrance toward inner areas, however, evidence that the dynamics of the walls are very different from those occurring at the ground independent from the distance from the surface are shown. Biodiversity indices highlighted sampling area diversity and a discrete total cave fauna biodiversity with the highest values found near the entrance and the lowest in the inner part of the cave.

Multiyear resource enrichment creates persistently higher species diversity in a landscape-scale field experiment

Short-term resource enrichment can increase species diversity in communities, but prolonged resource enrichment may result in either a diversity collapse or persistent high species diversity if fluctuation-dependent mechanisms of species coexistence are triggered. We tested the effects of resource enrichment on stream invertebrates by boosting densities of benthic detritus. In a 22-km stream length, we used wooden stakes to enhance retention of detritus at 40-m-long sites; other sites acted as controls. Detritus and invertebrates were sampled prior to treatment and then 1, 2, and 5 yr later. Previously, we reported that detrital densities, species diversity, and densities increased at enrichment sites after 12 months. Here we report that similar increases occurred 2 and 5 yr after manipulation. Prolonged resource enrichment produced persistently higher species diversity without loss of any taxa from the species pool, despite strong shifts in faunal composition in response to environmental variation, including a 1-in-100-yr flood. Detritus densities set upper limits to the densities of common taxa. Positive relations between invertebrate and detritus densities (density-resource relationships) took a variety of forms and showed that detritus was an essential resource for some taxa and a substitutable resource for others. Species varied in the minimum amount of detritus required for presence at a site, and population densities increased strongly from low densities when detritus was increased. These outcomes suggest that fluctuation-dependent mechanisms of coexistence enabled new taxa to coexist at manipulation sites, with relative nonlinear averaging of competition and the storage effect most likely to be in play. Two characteristics of the study stream underpin diversity increases with resource enrichment: overall low background densities of detritus and species that are able to disperse successfully from upstream areas where detritus is more abundant. Thus, the effects of resource enrichment are context dependent.

Invertebrates diversity in mountain Neotropical quartzite caves: which factors can influence the composition, richness, and distribution of the cave communities?

Twenty caves located in a high altitudinal quartzite area in Brazil were examined for invertebrate richness and composition and in terms of environmental factors that determine community structure. We evaluate how distance, altitude, cave extension, environmental stability, number and size of cave entrances and stream presence can act on species composition and richness. The caves presented a high richness of troglophilic (463 spp.) and troglobitic species (6 spp.) in relation to other siliciclastic caves around the world. The average richness was 39.55 species per cave (sd = 21.87), the quantitative similarity among caves was 41% and turnover was βrepl. = 0.769. Araneae (20% of the sampled species), Diptera (18%) and Coleoptera (14%) were the dominant orders regarding species richness. Only twenty percent of the caves were placed out of the confidence interval of the average taxonomic distinctness (∆+); however, the ∆+ decreased with the increase of environmental stability. Cave extension and stream presence were the main factors determining the variation of species composition among caves. Cave extension also influenced species richness variations. Furthermore, the total richness and richness of troglobitic species increased with cave extension. The threats to these habitats further revealed that the fauna is at risk due to tourism, trampling and natural soil erosion that can promote microhabitat alterations. Therefore, quartzite caves also require special attention regarding conservation actions in order to keep their natural biological dynamics.

Metabolic responses to long-term food deprivation in subterranean and surface amphipods

A long-standing hypothesis in subterranean biology posits that organisms living in poor resource subsurface habitats can withstand long periods of bioenergetic shortages due to an innate reduced metabolic rate when compared to their epigean counterparts. However, previous studies have proposed that caves with ample energy resources may not evolve organisms with reduced metabolic rate. The equivocal nature of previous findings suggests that there is a need to compare food deprivation responses of subterranean and surface species in order to elucidate whether there are widespread adaptations to low energy systems in subterranean taxa. The purpose of the study was to examine patterns in basal metabolism and the effects of food deprivation in closely related subterranean- and epigean- amphipods,Stygobromus peckiandSynurellasp. from central and east Texas, USA, respectively. Basal metabolic rates (measured as O2consumption) differed between species, withS. peckihaving substantially lower rates thanSynurella. Individuals of both species were food deprived for a pre-determined time interval and changes in total body protein, lipids, and carbohydrates were measured throughout food deprivation experiments.Stygobromus peckihad larger initial energy stores thanSynurellaand were more conservative in the use of energetic reserves over a prolonged period of food deprivation. Thus, it appears that althoughS. peckiare currently found in shallow phreatic and spring opening environments, they have maintained more efficient metabolic adaptations to deal with prolonged periods of food deprivation.

Variability of A Subterranean Prey-Predator Community in Space and Time

Subterranean habitats are characterized by buffered climatic conditions in comparison to contiguous surface environments and, in general, subterranean biological communities are considered to be relatively constant. However, although several studies have described the seasonal variation of subterranean communities, few analyzed their variability over successive years. The present research was conducted inside an artificial cave during seven successive summers, from 2013 to 2019. The parietal faunal community was sampled at regular intervals from outside to 21 m deep inside the cave. The community top predator is the cave salamander Speleomantes strinatii, while invertebrates, mainly adult flies, make up the rest of the faunal assemblage. Our findings indicate that the taxonomic composition and the spatial distribution of this community remained relatively constant over the seven-year study period, supporting previous findings. However, different environmental factors were shaping the distribution of predators and prey along the cave. Invertebrates were mainly affected by the illuminance, while salamanders were influenced by both illuminance and distance from the cave’s entrance. The inter-annual spatial distribution of the salamander population was highly repeatable and age specific, confirming a gradual shift towards the deeper parts of the cave with an increasing age. In general, the spatial distribution along the cave of this prey-predator system remained relatively constant during the seven-year study, suggesting that strong selective constraints were in action, even in this relatively recent subterranean ecosystem.

Even worms matter: cave habitat restoration for a planarian species increased environmental suitability but not abundance

Invertebrates living in underground environments often have unusual and sometimes unique adaptations and occupy narrow ranges, but there is a lack of knowledge about most micro-endemic cave-dwelling invertebrate species. An illustrative case is that of the flatworm Dendrocoelum italicum, the first survey of which was performed 79 years after its description. The survey revealed that the underground stream supplying water to the pool from which the species was first described had been diverted into a pipe for human use, thus severely reducing the available habitat for the species. Here we describe the results of what we believe is the first habitat restoration action performed in a cave habitat for the conservation of a flatworm. The water-diverting structure was removed, with the involvement of local protected area administrators, citizens and volunteers from local organizations. The intervention resulted in the restoration of a large, stable pool inside the cave, thus creating an optimal habitat for this threatened planarian, with increased availability of prey and a stable population. This report of habitat restoration for a neglected invertebrate offers insights for the protection of other micro-endemic species.

Influence of substrate on the richness and composition of Neotropical cave fauna

The food base in the subterranean environment consists mainly of allochthonous materials. In this environment the resources are distributed generally in a heterogeneous dispersed way and the distribution of resources and their availability determine where the terrestrial invertebrates will reside, which is important for understanding ecological relationships and to establish conservation strategies. Thus, we tested how the complexity of substrates influences the richness and composition of the subterranean terrestrial invertebrates in the Presidente Olegário karst area, southeastern Brazil. We carried out collections in six caves during both dry and wet seasons, using combined collection methods. We observed different distributions in relation to the substrate, because the environmental heterogeneity increases the amount of available niches for the fauna. Some taxa showed a preference for specific substrates, probably related to the availability of food resources and humidity and to body size restriction, emphasizing the niche differentiation between species. Anthropogenic impacts can cause irreversible alterations in the subterranean fauna because the subterranean environment is dependent on the surface for input of trophic resources. On-going impacts in the Presidente Olegario karst area, like agriculture, pastures, gas extraction, and hydroelectric projects, are therefore a serious threat to subterranean biodiversity and this region should be prioritized for conservation.

Effects of Residue Management on Decomposition in Irrigated Rice Fields Are Not Related to Changes in the Decomposer Community

Decomposers provide an essential ecosystem service that contributes to sustainable production in rice ecosystems by driving the release of nutrients from organic crop residues. During a single rice crop cycle we examined the effects of four different crop residue management practices (rice straw or ash of burned straw scattered on the soil surface or incorporated into the soil) on rice straw decomposition and on the abundance of aquatic and soil-dwelling invertebrates. Mass loss of rice straw in litterbags of two different mesh sizes that either prevented or allowed access of meso- and macro-invertebrates was used as a proxy for decomposition rates. Invertebrates significantly increased total loss of litter mass by up to 30%. Initially, the contribution of invertebrates to decomposition was significantly smaller in plots with rice straw scattered on the soil surface; however, this effect disappeared later in the season. We found no significant responses in microbial decomposition rates to management practices. The abundance of aquatic fauna was higher in fields with rice straw amendment, whereas the abundance of soil fauna fluctuated considerably. There was a clear separation between the overall invertebrate community structure in response to the ash and straw treatments. However, we found no correlation between litter mass loss and abundances of various lineages of invertebrates. Our results indicate that invertebrates can contribute to soil fertility in irrigated paddy fields by decomposing rice straw, and that their abundance as well as efficiency in decomposition may be promoted by crop residue management practices.

Concurrent effects of resource pulse amount, type, and frequency on community and population properties of consumers in detritus-based systems

Episodic resource inputs (i.e., pulses) can affect food web properties and community dynamics, but detailed mechanistic understanding of such effects remain elusive. Natural aquatic microsystems (e.g., tree holes, human-made containers) are colonized by invertebrates that form complex food webs dependent on episodic and sometimes sizeable inputs of allochthonous detritus from adjacent terrestrial environments. We investigated how variation in pulse frequency, amount, and resource type interacted to affect richness, abundance, composition, and population sizes of colonizing invertebrates in water-filled tires and tree hole analogs in a forest habitat. Different container types were used to assess the generality of effects across two environmental contexts. Containers received large infrequent or small frequent pulses of animal or leaf detritus of different cumulative amounts distributed over the same period. Invertebrates were sampled in June and September when cumulative detritus input was equal for the two pulse frequencies. Pulse frequency and detritus type interacted to affect the responses of richness and abundance in both months; pulse frequency alone in June affected the relationship between richness and abundance. Richness and abundance were also greater with more detritus regardless of detritus type. One group, the filter feeders, were most important in driving the response of abundance and richness to pulses, especially in June. This work highlights the potential complex nature of responses of communities and populations to resource pulses and implicates the ability of certain groups to exploit pulses of detrital resources as a key to understanding community-level responses to pulses.