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Marchesi S, Econdi S, Paul G, Carniato F, Marchese L, Guidotti M, Bisio C. Nb(V)-containing saponite: A versatile clay for the catalytic degradation of the hazardous organophosphorus pesticide paraoxon under very mild conditions. Heliyon 2024; 10:e39898. [PMID: 39553565 PMCID: PMC11564950 DOI: 10.1016/j.heliyon.2024.e39898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 10/11/2024] [Accepted: 10/25/2024] [Indexed: 11/19/2024] Open
Abstract
A synthetic saponite clay containing structural Nb(V) metal centres (NbSAP) was investigated in the abatement of paraoxon-ethyl, an anti-cholinergic organophosphorus pesticide, under mild conditions (neutral pH, room temperature and ambient pressure) in heterogenous phase, without additional basic additives. The material was selected according to its high surface acidity and ease of preparation through a one-step hydrothermal synthesis. The presence of Nb(V) ions played a crucial role in efficiently catalysing the degradation of aggressive chemical substrates. A niobium(V) oxide with very low surface acidity was also tested as a reference material. The study employed a multi-technique approach to monitor the pesticide degradation pathway and by-products formed during abatement experiments in polar non-protic and aqueous solvents. Notably, in water, the concentration of paraoxon-ethyl significantly decreased by 82 % within the first hour of contact with the clay. Additionally, NbSAP demonstrated a good performance after three repeated catalytic cycles and subsequent reactivation.
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Affiliation(s)
- Stefano Marchesi
- Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Viale Teresa Michel 11, 15121, Alessandria, AL, Italy
| | - Stefano Econdi
- CNR-SCITEC Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, Via C. Golgi 19, 20133, Milano, MI, Italy
- Dipartimento di Chimica, Università degli Studi di Milano, Via C. Golgi 19, 20133, Milano, Italy
| | - Geo Paul
- Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Viale Teresa Michel 11, 15121, Alessandria, AL, Italy
| | - Fabio Carniato
- Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Viale Teresa Michel 11, 15121, Alessandria, AL, Italy
| | - Leonardo Marchese
- Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Viale Teresa Michel 11, 15121, Alessandria, AL, Italy
| | - Matteo Guidotti
- CNR-SCITEC Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, Via C. Golgi 19, 20133, Milano, MI, Italy
| | - Chiara Bisio
- Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Viale Teresa Michel 11, 15121, Alessandria, AL, Italy
- CNR-SCITEC Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, Via C. Golgi 19, 20133, Milano, MI, Italy
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Kronenberg J, Britton D, Halvorsen L, Chu S, Kulapurathazhe MJ, Chen J, Lakshmi A, Renfrew PD, Bonneau R, Montclare JK. Supercharged Phosphotriesterase for improved Paraoxon activity. Protein Eng Des Sel 2024; 37:gzae015. [PMID: 39292622 PMCID: PMC11436286 DOI: 10.1093/protein/gzae015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 08/31/2024] [Accepted: 09/17/2024] [Indexed: 09/20/2024] Open
Abstract
Phosphotriesterases (PTEs) represent a class of enzymes capable of efficient neutralization of organophosphates (OPs), a dangerous class of neurotoxic chemicals. PTEs suffer from low catalytic activity, particularly at higher temperatures, due to low thermostability and low solubility. Supercharging, a protein engineering approach via selective mutation of surface residues to charged residues, has been successfully employed to generate proteins with increased solubility and thermostability by promoting charge-charge repulsion between proteins. We set out to overcome the challenges in improving PTE activity against OPs by employing a computational protein supercharging algorithm in Rosetta. Here, we discover two supercharged PTE variants, one negatively supercharged (with -14 net charge) and one positively supercharged (with +12 net charge) and characterize them for their thermodynamic stability and catalytic activity. We find that positively supercharged PTE possesses slight but significant losses in thermostability, which correlates to losses in catalytic efficiency at all temperatures, whereas negatively supercharged PTE possesses increased catalytic activity across 25°C-55°C while offering similar thermostability characteristic to the parent PTE. The impact of supercharging on catalytic efficiency will inform the design of shelf-stable PTE and criteria for enzyme engineering.
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Affiliation(s)
- Jacob Kronenberg
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Dustin Britton
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Leif Halvorsen
- Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA
| | - Stanley Chu
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Maria Jinu Kulapurathazhe
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Jason Chen
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Ashwitha Lakshmi
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - P Douglas Renfrew
- Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA
| | - Richard Bonneau
- Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA
- Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York 10010, USA
- Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York 10009, USA
| | - Jin Kim Montclare
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
- Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, USA
- Department of Chemistry, New York University, New York, New York 10012, USA
- Department of Biomaterials, New York University College of Dentistry, New York, New York 10010, USA
- Department of Biomedical Engineering, New York University, New York, NY 11201, USA
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Nam D, Kim Y, Kim M, Nam J, Kim S, Jin E, Lee CY, Choe W. Role of Zr 6 Metal Nodes in Zr-Based Metal-Organic Frameworks for Catalytic Detoxification of Pesticides. Inorg Chem 2021; 60:10249-10256. [PMID: 34037384 DOI: 10.1021/acs.inorgchem.1c00653] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Pesticides are chemicals widely used for agricultural industry, despite their negative impact on health and environment. Although various methods have been developed for pesticide degradation to remedy such adverse effects, conventional materials often take hours to days for complete decomposition and are difficult to recycle. Here, we demonstrate the rapid degradation of organophosphate pesticides with a Zr-based metal-organic framework (MOF), showing complete degradation within 15 min. MOFs with different active site structures (Zr node connectivity and geometry) were compared, and a porphyrin-based MOF with six-connected Zr nodes showed remarkable degradation efficiency with half-lives of a few minutes. Such a high efficiency was further confirmed in a simple flow system for several cycles. This study reveals that MOFs can be highly potent heterogeneous catalysts for organophosphate pesticide degradation, suggesting that coordination geometry of the Zr node significantly influences the catalytic activity.
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Affiliation(s)
- Dongsik Nam
- Department of Chemistry, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea
| | - Yeongjin Kim
- Department of Chemistry, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea
| | - Miyeon Kim
- Department of Energy and Chemical Engineering/Innovation Center for Chemical Engineering, Incheon National University, Yeonsu-gu, Incheon 22012, Republic of Korea
| | - Joohan Nam
- Department of Chemistry, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea
| | - Seonghoon Kim
- Department of Chemistry, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea
| | - Eunji Jin
- Department of Chemistry, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea
| | - Chang Yeon Lee
- Department of Energy and Chemical Engineering/Innovation Center for Chemical Engineering, Incheon National University, Yeonsu-gu, Incheon 22012, Republic of Korea
| | - Wonyoung Choe
- Department of Chemistry, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea
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Mechanism of central hypopnoea induced by organic phosphorus poisoning. Sci Rep 2020; 10:15834. [PMID: 32985607 PMCID: PMC7522229 DOI: 10.1038/s41598-020-73003-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 09/10/2020] [Indexed: 11/15/2022] Open
Abstract
Whether central apnoea or hypopnoea can be induced by organophosphorus poisoning remains unknown to date. By using the acute brainstem slice method and multi-electrode array system, we established a paraoxon (a typical acetylcholinesterase inhibitor) poisoning model to investigate the time-dependent changes in respiratory burst amplitudes of the pre-Bötzinger complex (respiratory rhythm generator). We then determined whether pralidoxime or atropine, which are antidotes of paraoxon, could counteract the effects of paraoxon. Herein, we showed that paraoxon significantly decreased the respiratory burst amplitude of the pre-Bötzinger complex (p < 0.05). Moreover, pralidoxime and atropine could suppress the decrease in amplitude by paraoxon (p < 0.05). Paraoxon directly impaired the pre-Bötzinger complex, and the findings implied that this impairment caused central apnoea or hypopnoea. Pralidoxime and atropine could therapeutically attenuate the impairment. This study is the first to prove the usefulness of the multi-electrode array method for electrophysiological and toxicological studies in the mammalian brainstem.
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