Plant Growth Promoting Rhizobacteria (PGPR) - Prospective and Mechanisms: A Review

Multiple Perspectives of Study on the Potential of Bacillus amyloliquefaciens JB20221020 for Alleviating Nutrient Stress in Lettuce

Soil nutrient deficiency has become a key factor limiting crop growth. Plant growth-promoting rhizobacteria (PGPR) are vital in resisting abiotic stress. In this study, we investigated the effects of inoculation with Bacillus amyloliquefaciens JB20221020 on the physiology, biochemistry, rhizosphere microorganisms, and metabolism of lettuce under nutrient stress. Pot experiments showed that inoculation with B. amyloliquefaciens JB20221020 significantly promoted lettuce growth under nutrient deficiency. At the same time, the activities of the antioxidant enzymes superoxide dismutase, peroxidase, and catalase and the content of proline increased, and the content of Malondialdehyde decreased in the lettuce inoculated with B. amyloliquefaciens JB20221020. Inoculation with B. amyloliquefaciens JB20221020 altered the microbial community of the rhizosphere and increased the relative abundances of Myxococcales, Deltaproteobacteria, Proteobacteria, Devosia, and Verrucomicrobia. Inoculation also altered the rhizosphere metabolism under nutrient deficiency. The folate metabolism pathway was significantly enriched in the Kyoto Encyclopedia of Genes and Genomes enrichment analysis. This study explored the interaction between plants and microorganisms under nutrient deficiency, further explained the critical role of rhizosphere microorganisms in the process of plant nutrient stress, and provided a theoretical basis for the use of microorganisms to improve plant resistance.

Mild to moderate drought stress reinforces the role of functional microbiome in promoting growth of a dominant forage species (Neopallasia pectinata) in desert steppe

Background

Desert steppe ecosystems are prone to drought stress, which influences the ecological balance and sustainable development of grasslands. In addition to directly restrict plant growth, drought stress indirectly impacts plant fitness by altering the diversity and function of root-associated microbiomes. This begs the question of whether the functional microbiome of forage plants, represented by synthetic microbial communities (SynComs), can be leveraged to mitigate drought stress in desert steppes and promote the ecological restoration of these fragile ecosystems.

Methods

A pot experiment was conducted to evaluate the role of SynComs in improving the plant growth and drought stress resistance of Neopallasia pectinata (Pall.) Poljak in desert steppe in Inner Mongolia, China. Six SynComs were derived from the rhizosphere and root endosphere of 12 dominant forage species in the desert steppe. Each SynCom comprised two to three bacterial genera (Bacillus, Protomicromonospora, and Streptomyces). We examined the capacities of different SynComs for nutrient solubilization, phytohormone secretion, and enzymatic activity.

Results

Under no water stress (75% soil water holding capacity, WHC), single strains performed better than SynComs in promoting plant growth in terms of stem diameter, root length, and plant dry weight, with the greatest effects observed for Streptomyces coeruleorubidus ATCC 13740 (p < 0.05). However, under mild to moderate drought stress (55% and 35% WHC), SynComs outperformed single strains in enhancing plant biomass accumulation and inducing the production of resistance-related substances (p < 0.05). No significant effect of single strains and SynComs emerged under extreme drought stress (20% WHC).

Conclusion

This study underscores the potential of SynComs in facilitating forage plants to combat drought stress in desert steppe. Mild to moderate drought stress stimulates SynComs to benefit the growth of N. pectinata plants, despite a soil moisture threshold (21% WHC) exists for the microbial effect. The use of SynComs provides a promising strategy for the ecological restoration and sustainable utilization of desert steppes by manipulating the functional microbiome of forage plants.

Survival strategies of Bacillus spp. in saline soils: Key factors to promote plant growth and health

Soil salinity is one of the most important abiotic factors that affects agricultural production worldwide. Because of saline stress, plants face physiological changes that have negative impacts on the various stages of their development, so the employment of plant growth-promoting bacteria (PGPB) is one effective means to reduce such toxic effects. Bacteria of the Bacillus genus are excellent PGPB and have been extensively studied, but what traits makes them so extraordinary to adapt and survive under harsh situations? In this work we review the Bacillus' innate abilities to survive in saline stressful soils, such as the production osmoprotectant compounds, antioxidant enzymes, exopolysaccharides, and the modification of their membrane lipids. Other survival abilities are also discussed, such as sporulation or a reduced growth state under the scope of a functional interaction in the rhizosphere. Thus, the most recent evidence shows that these saline adaptive activities are important in plant-associated bacteria to potentially protect, direct and indirect plant growth-stimulating activities. Additionally, recent advances on the mechanisms used by Bacillus spp. to improve the growth of plants under saline stress are addressed, including genomic and transcriptomic explorations. Finally, characterization and selection of Bacillus strains with efficient survival strategies are key factors in ameliorating saline problems in agricultural production.

Vertical migration of nutrients and water-soluble organic matter in the soil profile under pre-sowing seed treatment with plant growth promoting rhizobacteria

Studies conducted in a stationary lysimeter experiment in the conditions of the washing water regime have shown that the use of PGPR for pre-sowing seed inoculation of agricultural crops reduces vertical migration of biogenic nutrients and water-soluble organic matter down the soil profile. The effect of seed inoculation with PGPR on the reduction of nutrient losses was not specific to the type of rhizobacteria and was similar for crops grown on different mineral fertilizers backgrounds (spring barley and winter rye seeds were inoculated with the nitrogen-fixing bacteria—Azospirillum brasilense 410 and A. brasilense 18-2, respectively, while maize seeds were inoculated with the phosphate-mobilizing Paenibacillus polymyxa KB). Seed inoculation has decreased nitrogen leaching down the soil profile by 4–9 kg/ha, phosphorus compounds—by 0.5–3.0 kg/ha, potassium—by 0.6–3.0 kg/ha, calcium—by 6–42 kg/ha, magnesium—by 3.0–6.0 kg/ha, water-soluble organic matter—by 0.8–8.0 kg/ha, subject to crop and norms of mineral fertilizers. Maize seeds inoculated with phosphorous-mobilizing P. polymyxa KB under crop cultivation on the cattle manure background did not affect the intensity of nutrient migration. On the other hand, the combination of green manure (narrow-leaved lupine as an intermediate crop) with pre-sowing seed inoculation had significantly reduced nutrient losses beyond the root zone soil layer. It is concluded that the use of PGPR in crop production on mineral and green manure backgrounds contributes to the preservation of soil fertility by limiting biogenic nutrients and water-soluble organic matter leaching with the water drainage down the soil profile. Pre-sowing seed inoculation had no significant effect on the vertical migration of nutrients in the soil on the background of cattle manure, due to the highly competitive environment created with the introduction of microorganisms from organic fertilizer, preventing the establishment of close interactions between PGPR and plants.

Predatory activity of Acanthamoeba sp genotype T4 on different plant growth-promoting bacteria and their combined effect on rice seedling growth

Heterotrophic protists play a crucial role in plant growth promotion via nutrient cycling and shift in microbial community composition in the soil ecosystem. Selective predation pressure by protists contributes to the evaluation of plant beneficial traits in rhizospheric bacteria. However, not always all plant growth-promoting bacterial (PGPB) strains are benefitted by predation. This study aimed to examine the predatory effect of Acanthamoeba sp genotype T4 on a range of PGPB strains and their combined impact on early rice seedling growth. Acanthamoeba sp isolated from rice rhizosphere soils were used to assess predation against several PGPB such as Pseudomonas, Bacillus, Enterobacter, Morganella, Stenotrophomonas, Providencia, and Lysinibacillus on Nutrient Yeast Extract agar (NYE) plate. The controlled experiment on the germinated rice seeds (Oryza sativa L.) grown in Petri dishes containing each PGPB strain and Acanthamoeba sp was performed to evaluate the combined impact on plant performance. The PGPB-Acanthamoeba combined treatments in Petri dishes showed significant rice seedling growth compared to PGPB alone, non-PGPB and control. Our results indicated the positive but different impact of Acanthamoeba sp with different PGPB species on early rice plant growth. Further in-depth research should be carried out with diverse protists and PGPB species to assess which protist species can be linked to enhancement of indigenous soil PGPB for improved plant growth.

Investigation of bacterial diversity in Cajanus cajan-planted gangue soil via high-throughput sequencing

The ecological restoration of coal gangue can be achieved by planting Cajanus cajan (pigeon pea) because of its developed root system. The close relationships soil microorganisms have with plants are crucial for improving soil composition; the soil composition affects nutrient absorption. The microbial composition and function of soil planted with C. cajan in reclaimed land were compared with soil that was not planted with C. cajan (the control). Results showed that the dominant microflora in the soil significantly changed after planting C. cajan. Before planting, the dominant microflora included members of the phyla Sulfobacteria and Acidobacteria. After planting, the dominant microflora contained bacteria from phyla and classes that included Actinobacteria, Acidimicubia, Thermoleophilia, and Anaerolineae. Additionally, there were significant differences in the bacterial composition of each layer in soils planted with C. cajan. Principal component analysis revealed that the interpretation degrees of the results for PC2 and PC3 axes were 10.46% and 3.87%, respectively. The dominant microflora were Vicinamibacterales, Nocardioides, and Arthrobacter in the surface soil; Actinophytocola and Sphingomonas in the deep soil; and Sulfobacillus and Acidimicrobium in the mixed-layer soil. Function prediction analysis using the bioinformatics software package PICRUSt revealed that the abundance of operational taxonomic units corresponding to sigma 54-specific transcriptional regulators, serine threonine protein kinase, and histidine kinase increased by 111.2%, 56.8%, and 47.4%, respectively, after planting C. cajan. This study provides a reference for interactions among microorganisms in reclaimed soils for guiding the development and restoration of waste coal gangue hills.

Plant Growth-Promoting Bacteria as an Emerging Tool to Manage Bacterial Rice Pathogens

As a major food crop, rice (Oryza sativa) is produced and consumed by nearly 90% of the population in Asia with less than 9% produced outside Asia. Hence, reports on large scale grain losses were alarming and resulted in a heightened awareness on the importance of rice plants' health and increased interest against phytopathogens in rice. To serve this interest, this review will provide a summary on bacterial rice pathogens, which can potentially be controlled by plant growth-promoting bacteria (PGPB). Additionally, this review highlights PGPB-mediated functional traits, including biocontrol of bacterial rice pathogens and enhancement of rice plant's growth. Currently, a plethora of recent studies address the use of PGPB to combat bacterial rice pathogens in an attempt to replace existing methods of chemical fertilizers and pesticides that often lead to environmental pollutions. As a tool to combat bacterial rice pathogens, PGPB presented itself as a promising alternative in improving rice plants' health and simultaneously controlling bacterial rice pathogens in vitro and in the field/greenhouse studies. PGPB, such as Bacillus, Pseudomonas, Enterobacter, Streptomyces, are now very well-known. Applications of PGPB as bioformulations are found to be effective in improving rice productivity and provide an eco-friendly alternative to agroecosystems.