Topographic barriers drive the pronounced genetic subdivision of a range-limited fossorial rodent

Due to their limited dispersal ability, fossorial species with predominantly belowground activity usually show increased levels of population subdivision across relatively small spatial scales. This may be exacerbated in harsh mountain ecosystems, where landscape geomorphology limits species' dispersal ability and leads to small effective population sizes, making species relatively vulnerable to environmental change. To better understand the environmental drivers of species' population subdivision in remote mountain ecosystems, particularly in understudied high-elevation systems in Africa, we studied the giant root-rat (Tachyoryctes macrocephalus), a fossorial rodent confined to the afro-alpine ecosystem of the Bale Mountains in Ethiopia. Using mitochondrial and low-coverage nuclear genomes, we investigated 77 giant root-rat individuals sampled from nine localities across its entire ~1000 km2 range. Our data revealed a distinct division into a northern and southern group, with no signs of gene flow, and higher nuclear genetic diversity in the south. Landscape genetic analyses of the mitochondrial and nuclear genomes indicated that population subdivision was driven by slope and elevation differences of up to 500 m across escarpments separating the north and south, potentially reinforced by glaciation of the south during the Late Pleistocene (~42,000-16,000 years ago). Despite this landscape-scale subdivision between the north and south, weak geographic structuring of sampling localities within regions indicated gene flow across distances of at least 16 km at the local scale, suggesting high, aboveground mobility for relatively long distances. Our study highlights that despite the potential for local-scale gene flow in fossorial species, topographic barriers can result in pronounced genetic subdivision. These factors can reduce genetic variability, which should be considered when developing conservation strategies.

A walk on the wild side: A review of the epidemiology of Toxocara canis and Toxocara cati in wild hosts

Toxocara species are cosmopolitan nematode parasites of companion, domestic and wild hosts. Of the 26 known species of Toxocara, only Toxocara canis and Toxocara cati are definitively zoonotic. The significance of wild carnivores as definitive hosts of T. canis and T. cati respectively, has received far less attention compared to domestic dogs and cats. Complex environmental changes have promoted increasing contact between wildlife, domestic animals and humans that can enhance the risk of pathogen spillover. This review lists a total of 19 species of wild canid host that have been shown to act as definitive hosts for T. canis and a total of 21 species of wild felid host. In general, the number of publications focusing on felid host species is fewer in number, reflecting the general paucity of data on T. cati. The wild canids that have received the most attention in the published literature include the red fox (Vulpes vulpes), the wolf (Canis lupus), and the golden jackal (Canis aureus). The wild felid species that has received the most attention in the published literature is the Eurasian lynx (Lynx lynx). Some non-canid and non-felid hosts also act as definitive hosts of Toxocara species. Certainly, red foxes would appear to be the most significant wild species in terms of their potential to transmit Toxocara to domestic dogs and humans via environmental contamination. This can be explained by their increasing population densities, encroachment into urban areas and their dietary preferences for a wide range of potential paratenic hosts. However, a major challenge remains to assess the relative importance of wild hosts as contributors to environmental contamination with Toxocara ova. Furthermore, one major constraint to our understanding of the significance of wildlife parasitism is a lack of access to samples, particularly from rare host species.

Long-term Small Population Size, Deleterious Variation, and Altitude Adaptation in the Ethiopian Wolf, a Severely Endangered Canid

Ethiopian wolves, a canid species endemic to the Ethiopian Highlands, have been steadily declining in numbers for decades. Currently, out of 35 extant species, it is now one of the world's most endangered canids. Most conservation efforts have focused on preventing disease, monitoring movements and behavior, and assessing the geographic ranges of sub-populations. Here, we add an essential layer by determining the Ethiopian wolf's demographic and evolutionary history using high-coverage (∼40×) whole-genome sequencing from 10 Ethiopian wolves from the Bale Mountains. We observe exceptionally low diversity and enrichment of weakly deleterious variants in the Ethiopian wolves in comparison with two North American gray wolf populations and four dog breeds. These patterns are consequences of long-term small population size, rather than recent inbreeding. We infer the demographic history of the Ethiopian wolf and find it to be concordant with historic records and previous genetic analyses, suggesting Ethiopian wolves experienced a series of both ancient and recent bottlenecks, resulting in a census population size of fewer than 500 individuals and an estimated effective population size of approximately 100 individuals. Additionally, long-term small population size may have limited the accumulation of strongly deleterious recessive mutations. Finally, as the Ethiopian wolves have inhabited high-altitude areas for thousands of years, we searched for evidence of high-altitude adaptation, finding evidence of positive selection at a transcription factor in a hypoxia-response pathway [CREB-binding protein (CREBBP)]. Our findings are pertinent to continuing conservation efforts and understanding how demography influences the persistence of deleterious variation in small populations.

Wolf spatial behavior promotes encounters and kills of abundant prey

Predators use different spatial tactics to track the prey on the landscape. Three hypotheses describe spatial tactics: prey abundance for prey that are aggregated in space; prey habitat for uniformly distributed prey; and prey catchability for prey that are difficult to catch and kill. The gray wolf (Canis lupus) is a generalist predator that likely employs more than one spatial hunting tactic to match their diverse prey with distinct distributions and behavior that are available. We conducted a study on 17 GPS collared wolves in 6 packs in Riding Mountain National Park, Manitoba, Canada where wolves prey on moose (Alces alces) and elk (Cervus canadensis). We evaluated wolf selection for prey density, habitat selection and catchability on the landscape through within-territory habitat selection analysis. We reveal support for both the prey habitat and prey catchability hypotheses. For moose, their primary prey, wolves employed a mixed habitat and catchability tactic. Wolves used spaces described by the intersection of moose habitat and moose catchability. Wolves selected for the catchability of elk, their secondary prey, but not elk habitat. Counter to our predictions, wolves avoided areas of moose and elk density, likely highlighting the ongoing space race between predator and prey. We illustrate that of the three hypotheses the primary driver was prey catchability, where the interplay of both prey habitat with catchability culminate in predator spatial behaviour in a multiprey system.

Complete mitochondrial genome of the giant root-rat (Tachyoryctes macrocephalus)

The endangered giant root-rat (Tachyoryctes macrocephalus, also known as giant mole rat) is a fossorial rodent endemic to the afro-alpine grasslands of the Bale Mountains in Ethiopia. The species is an important ecosystem engineer with the majority of the global population found within 1000 km². Here, we present the first complete mitochondrial genome of the giant root-rat and the genus Tachyoryctes, recovered using shotgun sequencing and iterative mapping. A phylogenetic analysis including 15 other representatives of the family Spalacidae placed Tachyoryctes as sister genus to Rhizomys with high support. This position is in accordance with a recent study revealing the topology of the Spalacidae family. The full mitochondrial genome of the giant root-rat presents an important resource for further population genetic studies.

Scavenging Effects of Large Canids

Many large predators are also facultative scavengers that may compete with and depredate other species at carcasses. Yet, the ecological impacts of facultative scavenging by large predators, or their "scavenging effects," still receive relatively little attention in comparison to their predation effects. To address this knowledge gap, we comprehensively examine the roles played by, and impacts of, facultative scavengers, with a focus on large canids: the African wild dog (Lycaon pictus), dhole (Cuon alpinus), dingo (Canis dingo), Ethiopian wolf (Canis simensis), gray wolf (Canis lupus), maned wolf (Chrysocyon brachyurus), and red wolf (Canis rufus). Specifically, after defining facultative scavenging as use or usurpation of a carcass that a consumer has not killed, we (1) provide a conceptual overview of the community interactions around carcasses that can be initiated by facultative scavengers, (2) review the extent of scavenging by and the evidence for scavenging effects of large canids, (3) discuss external factors that may diminish or enhance the effects of large canids as scavengers, and (4) identify aspects of this phenomenon that require additional research attention as a guide for future work.

Rethinking trophic niches: Speed and body mass colimit prey space of mammalian predators

Realized trophic niches of predators are often characterized along a one-dimensional range in predator-prey body mass ratios. This prey range is constrained by an "energy limit" and a "subdue limit" toward small and large prey, respectively. Besides these body mass ratios, maximum speed is an additional key component in most predator-prey interactions.Here, we extend the concept of a one-dimensional prey range to a two-dimensional prey space by incorporating a hump-shaped speed-body mass relation. This new "speed limit" additionally constrains trophic niches of predators toward fast prey.To test this concept of two-dimensional prey spaces for different hunting strategies (pursuit, group, and ambush predation), we synthesized data on 63 terrestrial mammalian predator-prey interactions, their body masses, and maximum speeds.We found that pursuit predators hunt smaller and slower prey, whereas group hunters focus on larger but mostly slower prey and ambushers are more flexible. Group hunters and ambushers have evolved different strategies to occupy a similar trophic niche that avoids competition with pursuit predators. Moreover, our concept suggests energetic optima of these hunting strategies along a body mass axis and thereby provides mechanistic explanations for why there are no small group hunters (referred to as "micro-lions") or mega-carnivores (referred to as "mega-cheetahs").Our results demonstrate that advancing the concept of prey ranges to prey spaces by adding the new dimension of speed will foster a new and mechanistic understanding of predator trophic niches and improve our predictions of predator-prey interactions, food web structure, and ecosystem functions.

Foraging ecology of African wolves (Canis lupaster) and its implications for the conservation of Ethiopian wolves (Canis simensis)

African wolves (AWs) are sympatric with endangered Ethiopian wolves (EWs) in parts of their range. Scat analyses have suggested a dietary overlap between AWs and EWs, raising the potential for exploitative competition, and a possible conservation threat to EWs. However, in contrast to that of the well-studied EW, the foraging ecology of AWs remains poorly characterized. Accordingly, we studied the foraging ecology of radio-collared AWs (n = 11 individuals) at two localities with varying levels of anthropogenic disturbance in the Ethiopian Highlands, the Guassa-Menz Community Conservation Area (GMCCA) and Borena-Saynt National Park (BSNP), accumulating 845 h of focal observation across 2952 feeding events. We also monitored rodent abundance and rodent trapping activity by local farmers who experience conflict with AWs. The AW diet consisted largely of rodents (22.0%), insects (24.8%), and goats and sheep (24.3%). Of the total rodents captured by farmers using local traps during peak barley production (July to November) in GMCCA, averaging 24.7 ± 8.5 rodents/hectare/day, 81% (N = 3009) were scavenged by AWs. Further, of all the rodents consumed by AWs, most (74%) were carcasses. These results reveal complex interactions between AWs and local farmers, and highlight the scavenging niche occupied by AWs in anthropogenically altered landscapes in contrast to the active hunting exhibited by EWs in more intact habitats. While AWs cause economic damage to local farmers through livestock predation, they appear to play an important role in scavenging pest rodents among farmlands, a pattern of behaviour which likely mitigates direct and indirect competition with EWs. We suggest two routes to promote the coexistence of AWs and EWs in the Ethiopian highlands: local education efforts highlighting the complex role AWs play in highland ecosystems to reduce their persecution, and enforced protection of intact habitats to preserve habitat preferred by EWs.

Anthropogenic Food Subsidy to a Commensal Carnivore: The Value and Supply of Human Faeces in the Diet of Free-Ranging Dogs

Simple Summary

Free-ranging dog populations are growing worldwide, posing threats to human health and wildlife conservation. Dog population management requires a better understanding of the supply and quality of human-derived food. We studied the diet of free-ranging dogs in a remote area of Zimbabwe to explore the relationships between human waste, dog condition, and fertility, with a focus on the value of human faeces. We found that mammal remains, ‘sadza’ (maize porridge, the human staple) and human faeces were the most important food items, and unlike other items, faeces and sadza were consistently available. Nutritional analysis showed that human faeces was comparatively high in protein and energy content, exceeding that of sadza, and equivalent to mammal remains. Adult female dog condition was good throughout the year, indicating a diet sufficient to maintain fertility, and dogs largely fed alone, suggesting that food was abundant. We conclude that the lack of sanitation allows an important food subsidy to free-ranging dogs, but improved sanitation is unlikely to limit population growth as long as alternative human waste is available. Reproductive control by owners is more likely to reduce fertility rates.

Abstract

As the global population of free-ranging domestic dogs grows, there is increasing concern about impacts on human health and wildlife conservation. Effective management of dog populations requires reliable information on their diet, feeding behavior, and social ecology. Free-ranging dogs are reliant on humans, but anthropogenic food subsidies, particularly human faeces (i.e., coprophagy) have not previously been fully quantified. In this study we assess the contributions of different food types to the diet, and their influences on the social behaviour of free-ranging dogs in communal lands of rural Zimbabwe, with a focus on coprophagy. Free-ranging dog diets, body condition, and sociology were studied amongst 72 dogs over 18 months using scat analysis and direct observations. Human faeces constituted the fourth most common item in scats (56% occurrence) and contributed 21% by mass to the observed diet. Human faeces represented a valuable resource because relative to other food items it was consistently available, and of higher nutritional value than ‘sadza’ (maize porridge, the human staple and primary human-derived food), yielding 18.7% crude protein and 18.7 KJ/kg gross energy, compared to 8.3% and 18.5 KJ/kg for sadza, respectively. Human faeces had protein and energy values equivalent to mammal remains, another important food item. Dog condition was generally good, with 64% of adult females and 74% of adult males in the highest two body condition scores (on a five point scale), suggesting a plentiful and high quality food supply. Dogs largely fed alone, perhaps as a consequence of the small, inert, and spatially dispersed items that comprise their diet, and its abundance. We discuss the relationships between sanitation, human development, the supply of human faeces, female dog fertility, and population control.

Ecological role of the giant root-rat (Tachyoryctes macrocephalus) in the Afroalpine ecosystem

Rodents with prevailing subterranean activity usually play an important role in the ecosystems of which they are a part due to the combined effect of herbivory and soil perturbation. This is the case for the giant root-rat Tachyoryctes macrocephalus endemic to the Afroalpine ecosystem of the Bale Mountains, Ethiopia. We studied the impact of root-rats on various ecosystem features within a 3.5-ha study locality dominated by Alchemilla pasture, which represents an optimal habitat for this species, in 2 periods of a year. The root-rats altered plant species composition, reducing the dominant forb, Alchemilla abyssinica, while enhancing Salvia merjame and a few other species, and reduced vegetation cover, but not the fresh plant biomass. Where burrows were abandoned by root-rats, other rodents took them over and A. abyssinica increased again. Root-rat burrowing created small-scale heterogeneity in soil compactness due to the backfilling of some unused burrow segments. Less compacted soil tended to be rich in nutrients, including carbon, nitrogen and phosphorus, which likely affected the plant growth on sites where the vegetation has been reduced as a result of root-rat foraging and burrowing.

Community Resource Uses and Ethiopian Wolf Conservation in Mount Abune Yosef

People who perceive economic benefits and enjoy unrestricted access to natural resources tend to support ecosystem conservation efforts. Our study explores whether this remains true in remnant patches of Afroalpine ecosystem in North Ethiopia, where communal land provides valuable natural resources for the local communities and also sustain small populations of the endangered Ethiopian wolf (Canis simensis). Questionnaires were designed to assess ecological and socio-economic characteristics of the livelihoods of the Amhara people living in Mount Abune Yosef and their attitudes toward Afroalpine and Ethiopian wolf conservation. Of the 120 households interviewed, selected randomly from across eight villages, 80 % benefited from natural resources by grazing their livestock and harvesting firewood and grasses. The majority (90 %) also suffered from livestock predation by Ethiopian wolves and common jackals (Canis aureus) and crop raiding by geladas (Theropithecus gelada), birds, and rodents, yet more than half reported a positive attitudes toward Ethiopian wolves (66 %). People with positive attitudes tended to live close to the communal land, to own more livestock, and to be unaffected by conflict. Many also recognized the need to protect the Afroalpine habitats of Abune Yosef (71 %), and this attitude predominated among the literate, households that owned land, had smaller herds and were further away. We discussed how people's attitudes were modulated by human-wildlife conflicts and by the benefits derived from the access to natural resources in communal land, and the implications for the conservation of Afroalpine ecosystem and the flagship Ethiopian wolf.

Fitness impacts of tapeworm parasitism on wild gelada monkeys at Guassa, Ethiopia

Parasitism is expected to impact host morbidity or mortality, although the fitness costs of parasitism have rarely been quantified for wildlife hosts. Tapeworms in the genus Taenia exploit a variety of vertebrates, including livestock, humans, and geladas (Theropithecus gelada), monkeys endemic to the alpine grasslands of Ethiopia. Despite Taenia's adverse societal and economic impacts, we know little about the prevalence of disease associated with Taenia infection in wildlife or the impacts of this disease on host health, mortality and reproduction. We monitored geladas at Guassa, Ethiopia over a continuous 6½ year period for external evidence (cysts or coenuri) of Taenia-associated disease (coenurosis) and evaluated the impact of coenurosis on host survival and reproduction. We also identified (through genetic and histological analyses) the tapeworms causing coenurosis in wild geladas at Guassa as Taenia serialis. Nearly 1/3 of adult geladas at Guassa possessed ≥1 coenurus at some point in the study. Coenurosis adversely impacted gelada survival and reproduction at Guassa and this impact spanned two generations: adults with coenuri suffered higher mortality than members of their sex without coenuri and offspring of females with coenuri also suffered higher mortality. Coenurosis also negatively affected adult reproduction, lengthening interbirth intervals and reducing the likelihood that males successfully assumed reproductive control over units of females. Our study provides the first empirical evidence that coenurosis increases mortality and reduces fertility in wild nonhuman primate hosts. Our research highlights the value of longitudinal monitoring of individually recognized animals in natural populations for advancing knowledge of parasite-host evolutionary dynamics and offering clues to the etiology and control of infectious disease.

Helminth parasites in the endangered Ethiopian wolf,Canis simensis

Ethiopian wolves,Canis simensis, are an endangered carnivore endemic to the Ethiopian highlands. Although previous studies have focused on aspects of Ethiopian wolf biology, including diet, territoriality, reproduction and infectious diseases such as rabies, little is known of their helminth parasites. In the current study, faecal samples were collected from 94 wild Ethiopian wolves in the Bale Mountains of southern Ethiopia, between August 2008 and February 2010, and were screened for the presence of helminth eggs using a semi-quantitative volumetric dilution method with microscopy. We found that 66 of the 94 faecal samples (70.2%) contained eggs from at least one group of helminths, includingCapillaria,Toxocara,Trichuris, ancylostomatids,Hymenolepisand taeniids. Eggs ofCapillariasp. were found most commonly, followed byTrichurissp., ancylostomatid species andToxocaraspecies. Three samples containedHymenolepissp. eggs, which were likely artefacts from ingested prey species. Four samples contained taeniid eggs, one of which was copro-polymerase chain reaction (copro-PCR) and sequence positive forEchinococcus granulosus, suggesting a spillover from a domestic parasite cycle into this wildlife species. Associations between presence/absence ofCapillaria,ToxocaraandTrichuriseggs were found; and egg burdens ofToxocaraand ancylostomatids were found to be associated with geographical location and sampling season.

The physiology of cooperative breeding in a rare social canid; sex, suppression and pseudopregnancy in female Ethiopian wolves

Ethiopian wolves, Canis simensis, differ from other cooperatively breeding canids in that they combine intense sociality with solitary foraging, making them a suitable species in which to study the physiology of cooperative breeding. The reproductive physiology of twenty wild female Ethiopian wolves (eleven dominant and nine subordinate) in Ethiopia's Bale Mountains National Park was studied non-invasively through the extraction and assaying of estradiol, progesterone and glucocorticoids in collected fecal samples using enzyme and radioimmunoassays. All dominant females showed increased estradiol concentrations and/or mating behavior during the annual mating season. In contrast, none of the subordinate females showed increased estradiol concentrations or mating behavior during the mating season. However, two subordinate females came into estrus outside of the mating season. Both dominant and subordinate females had higher average progesterone concentrations during the dominant female's pregnancy than at other times of the year, and two subordinate females allosuckled the dominant female's pups. No statistically significant differences in glucocorticoid concentrations were found between dominant and subordinate females. These results suggest that subordinate females are reproductively suppressed during the annual mating season, but may ovulate outside of the mating season and become pseudopregnant. No evidence was found to suggest that reproductive suppression in subordinate females was regulated through aggressive behaviors, and no relationship was found between fecal glucocorticoids and dominance status.

Sex, stress and social status: patterns in fecal testosterone and glucocorticoid metabolites in male Ethiopian wolves

Ethiopian wolves, Canis simensis, live in large multi-male family packs, where males are philopatric and do not disperse. Within a pack, mating and breeding is largely monopolized by the dominant male and female, although extra-pack copulations are common, and subordinate males may sire pups in neighboring packs. Regardless of paternity, all males in a pack help rear the pups. We non-invasively studied patterns in fecal testosterone and glucocorticoid metabolite concentrations using radioimmunoassays of fecal samples collected from nine wild male Ethiopian wolves between August 2007 and February 2008. We tested the predictions of the Challenge Hypothesis, namely that fecal testosterone metabolite concentrations would be higher during the annual mating season, which is the portion of the reproductive cycle when mating and increased aggression typically occur, and lower when there were pups in the pack for which to care. Contrary to the predictions of the Challenge Hypothesis, we did not detect patterns in fecal testosterone metabolite concentrations associated with reproductive stage during our study period. Similarly, we found no patterns associated with reproductive stage in male fecal glucocorticoid metabolite concentrations. Dominant males had higher average fecal testosterone and glucocorticoid metabolite concentrations than did subordinates, which may be related to higher rates of aggression and mate guarding in dominant males of group-living canids, a pattern also reported in African wild dogs, Lycaon pictus.

Major histocompatibility complex diversity in the endangered Ethiopian wolf (Canis simensis)

The major histocompatibility complex (MHC) influences immune response to infection and vaccination. In most species, MHC genes are highly polymorphic, but few wild canid populations have been investigated. In Ethiopian wolves, we identified four DLA (dog leucocyte antigen)-DRB1, two DLA-DQA1 and five DQB1 alleles. Ethiopian wolves, the world's rarest canids with fewer than 500 animals worldwide, are further endangered and threatened by rabies. Major rabies outbreaks in the Bale Mountains of southern Ethiopia (where over half of the Ethiopian wolf population is located) have killed over 75% of wolves in the affected sub-populations. In 2004, following a rabies outbreak, 77 wolves were vaccinated, and 19 were subsequently recaptured to monitor the effectiveness of the intervention. Pre- and post-vaccination rabies antibody titres were available for 18 animals, and all of the animals sero-converted after vaccination. We compared the haplotype frequencies of this group of 18 with the post-vaccination antibody titre, and showed that one haplotype was associated with a lower response (uncorrected P < 0.03). In general, Ethiopian wolves probably have an adequate amount of MHC variation to ensure the survival of the species. However, we sampled only the largest Ethiopian wolf population in Bale, and did not take the smaller populations further north into consideration.

Behavior of geladas and other endemic wildlife during a desert locust outbreak at Guassa, Ethiopia: ecological and conservation implications

Desert locust (Schistocerca gregaria) outbreaks have occurred repeatedly throughout recorded history in the Horn of Africa region, devastating crops and contributing to famines. In June 2009, a desert locust swarm invaded the Guassa Plateau, Ethiopia, a large and unusually intact Afroalpine tall-grass ecosystem, home to important populations of geladas (Theropithecus gelada), Ethiopian wolves (Canis simensis), thick-billed ravens (Corvus crassirostris), and other Ethiopian or Horn of Africa endemics. During the outbreak and its aftermath, we observed many animals, including geladas, ravens, and a wolf, feeding on locusts in large quantities. These observations suggest surprising flexibility in the normally highly specialized diets of geladas and wolves, including the potential for temporary but intensive insectivory during locust outbreaks. To our knowledge, Guassa is the highest elevation site (3,200-3,600 m) at which desert locusts, which require temperatures >20 degrees C for sustained flight, have been reported. Continued monitoring will be necessary to determine whether the June 2009 outbreak was an isolated incident or part of an emerging pattern in the Ethiopian Highlands linked to global warming. The intensive consumption of desert locusts by geladas, wolves, and ravens during the outbreak at Guassa raises concerns about pesticide-based locust control strategies and potential unintended adverse effects on endemic and endangered wildlife.