1
|
Jeffery A, Gilbert M, Corsaut L, Gaudreau A, Obradovic MR, Cloutier S, Frenette MC, Surprenant C, Lacouture S, Arnal JL, Gottschalk M, Segura M. Immune response induced by a Streptococcus suis multi-serotype autogenous vaccine used in sows to protect post-weaned piglets. Vet Res 2024; 55:57. [PMID: 38715138 PMCID: PMC11076212 DOI: 10.1186/s13567-024-01313-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 04/09/2024] [Indexed: 05/12/2024] Open
Abstract
Streptococcus suis is a bacterial pathogen that causes important economic losses to the swine industry worldwide. Since there are no current commercial vaccines, the use of autogenous vaccines applied to gilts/sows to enhance transfer of passive immunity is an attractive alternative to protect weaned piglets. However, there is no universal standardization in the production of autogenous vaccines and the vaccine formulation may be highly different among licenced manufacturing laboratories. In the present study, an autogenous vaccine that included S. suis serotypes 2, 1/2, 5, 7 and 14 was prepared by a licensed laboratory and administrated to gilts using a three-dose program prior to farrowing. The antibody response in gilts as well as the passive transfer of antibodies to piglets was then evaluated. In divergence with previously published data with an autogenous vaccine produced by a different company, the increased response seen in gilts was sufficient to improve maternal antibody transfer to piglets up to 5 weeks of age. However, piglets would still remain susceptible to S. suis disease which often appears during the second part of the nursery period. Vaccination did not affect the shedding of S. suis (as well as that of the specific S. suis serotypes included in the vaccine) by either gilts or piglets. Although all antibiotic treatments were absent during the trial, the clinical protective effect of the vaccination program with the autogenous vaccine could not be evaluated, since limited S. suis cases were present during the trial, confirming the need for a complete evaluation of the clinical protection that must include laboratory confirmation of the aetiological agent involved in the presence of S. suis-associated clinical signs. Further studies to evaluate the usefulness of gilt/sow vaccination with autogenous vaccines to protect nursery piglets should be done.
Collapse
Affiliation(s)
- Alison Jeffery
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada
| | - Mélina Gilbert
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada
| | - Lorelei Corsaut
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada
| | - Annie Gaudreau
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada
| | - Milan R Obradovic
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada
- Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK, Canada
| | | | | | | | - Sonia Lacouture
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada
| | - Jose Luis Arnal
- Exopol, Veterinary Diagnostic and Autogenous Vaccine Laboratory, Zaragoza, Spain
| | - Marcelo Gottschalk
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada.
| | - Mariela Segura
- Swine and Poultry Infectious Diseases Research Centre, and Research Group On Infectious Diseases in Production Animals, Faculty of Veterinary Medicine, University of Montreal, St-Hyacinthe, QC, J2S 2M2, Canada.
| |
Collapse
|
2
|
Kobayashi K, Kubota H, Tohya M, Ushikubo M, Yamamoto M, Ariyoshi T, Uchitani Y, Mitobe M, Okuno R, Nakagawa I, Sekizaki T, Suzuki J, Sadamasu K. Characterization of pig tonsils as niches for the generation of Streptococcus suis diversity. Vet Res 2024; 55:17. [PMID: 38321502 PMCID: PMC10848530 DOI: 10.1186/s13567-024-01270-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 01/12/2024] [Indexed: 02/08/2024] Open
Abstract
Streptococcus suis is a gram-positive bacterium that causes meningitis, septicemia, endocarditis, and other disorders in pigs and humans. We obtained 42 and 50 S. suis isolates from lesions of porcine endocarditis and palatine tonsils, respectively, of clinically healthy pigs in Japan; we then determined their sequence types (STs) by multilocus sequence typing (MLST), cps genotypes, serotypes, and presence of classical major virulence-associated marker genes (mrp, epf, and sly). The 42 isolates from endocarditis lesions were assigned to a limited number of STs and clonal complexes (CCs). On the other hand, the 50 isolates from tonsils were diverse in these traits and seemingly in the degree of virulence, suggesting that tonsils can accommodate a variety of S. suis isolates. The goeBURST full algorithm using tonsil isolates obtained in this study and those retrieved from the database showed that major CCs as well as many other clusters were composed of isolates originating from different countries, and some of the STs were very similar to each other despite the difference in country of origin. These findings indicate that S. suis with not only different but also similar mutations in the genome have survived in tonsils independently across different geographical locations. Therefore, unlike the lesions of endocarditis, the tonsils of pigs seemingly accommodate various S. suis lineages. The present study suggests that S. suis acquired its diversity by natural mutations during colonization and persistence in the tonsils of pigs.
Collapse
Affiliation(s)
- Kai Kobayashi
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan.
| | - Hiroaki Kubota
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| | - Mari Tohya
- Division of Biomedical Food Research, National Institute of Health Sciences, Tonomachi 3-25-26, Kawasaki-ku, Kawasaki-shi, Kanagawa, 210-9501, Japan
- Department of Microbiology and Department of Microbiome Research, Juntendo University School of Medicine, Hongo 2-1-1, Bunkyo-ku, Tokyo, 113-8421, Japan
| | - Megumi Ushikubo
- Shibaura Meat Sanitary Inspection Station, Tokyo Metropolitan Government, Konan 2-7-19, Minato-ku, Tokyo, 108-0075, Japan
| | - Miki Yamamoto
- Shibaura Meat Sanitary Inspection Station, Tokyo Metropolitan Government, Konan 2-7-19, Minato-ku, Tokyo, 108-0075, Japan
| | - Tsukasa Ariyoshi
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| | - Yumi Uchitani
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| | - Morika Mitobe
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| | - Rumi Okuno
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| | - Ichiro Nakagawa
- Department of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Tsutomu Sekizaki
- Department of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 606-8501, Japan
- Research Center for Food Safety, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Jun Suzuki
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| | - Kenji Sadamasu
- Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Hyakunincho 3-24-1, Shinjuku-ku, Tokyo, 169-0073, Japan
| |
Collapse
|
3
|
Hau SJ, Nielsen DW, Brockmeier SL. Prior infection with Bordetella bronchiseptica enhanced colonization but not disease with Streptococcus suis. Vet Microbiol 2023; 284:109841. [PMID: 37542929 DOI: 10.1016/j.vetmic.2023.109841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 07/28/2023] [Accepted: 07/30/2023] [Indexed: 08/07/2023]
Abstract
Bordetella bronchiseptica and Streptococcus suis are widely distributed swine pathogens. B. bronchiseptica is a primary pathogen and causes atrophic rhinitis and bronchopneumonia. S. suis is a contributing agent to porcine respiratory disease complex and causes systemic diseases including arthritis, meningitis, polyserositis, and septicemia. Colonization with B. bronchiseptica has been associated with increased colonization by other pathogenic bacteria and increased disease severity with viral and bacterial pathogens. It has also been reported to predispose cesarean derived, colostrum deprived (CDCD) piglets to S. suis systemic disease. Here, we evaluated the role of B. bronchiseptica colonization on S. suis colonization, dissemination, and disease in one study using conventional pigs and another using CDCD pigs. Pigs were challenged with S. suis, B. bronchiseptica, or B. bronchiseptica followed by S. suis. Incidence of S. suis disease was not increased in either study for animals pre-inoculated with B. bronchiseptica. Nasal colonization with S. suis was increased in coinfected animals, while B. bronchiseptica was similar between mono- and co-infected animals. Although increased S. suis disease was not seen in coinfected pigs, there is evidence that B. bronchiseptica can increase colonization with S. suis, which may contribute to enhanced disease when animals are stressed or immunocompromised.
Collapse
Affiliation(s)
- Samantha J Hau
- National Animal Disease Center, Agricultural Research Service, USDA, Ames, IA, United States.
| | - Daniel W Nielsen
- National Animal Disease Center, Agricultural Research Service, USDA, Ames, IA, United States; Oak Ridge Institute for Science and Education, Oak Ridge, TN, United States
| | - Susan L Brockmeier
- National Animal Disease Center, Agricultural Research Service, USDA, Ames, IA, United States.
| |
Collapse
|
4
|
Bogomazova A, Krylova E, Soltynskaya I, Prasolova O, Ivanova O. In silico analysis to develop PCR assays for identification of bacterial pathogens in animals: what can we improve? Front Vet Sci 2023; 10:1235837. [PMID: 37645677 PMCID: PMC10461052 DOI: 10.3389/fvets.2023.1235837] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 07/31/2023] [Indexed: 08/31/2023] Open
Affiliation(s)
- Alexandra Bogomazova
- Department of Molecular Biology, Russian State Center for Quality and Standardization of Veterinary Drugs and Feed (VGNKI), Moscow, Russia
- Laboratory of Cell Biology, Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of FMBA of Russia (Lopukhin FRCC PCM), Moscow, Russia
| | - Ekaterina Krylova
- Department of Molecular Biology, Russian State Center for Quality and Standardization of Veterinary Drugs and Feed (VGNKI), Moscow, Russia
| | - Irina Soltynskaya
- Department of Molecular Biology, Russian State Center for Quality and Standardization of Veterinary Drugs and Feed (VGNKI), Moscow, Russia
| | - Olga Prasolova
- Department of Molecular Biology, Russian State Center for Quality and Standardization of Veterinary Drugs and Feed (VGNKI), Moscow, Russia
| | - Olga Ivanova
- Department of Molecular Biology, Russian State Center for Quality and Standardization of Veterinary Drugs and Feed (VGNKI), Moscow, Russia
| |
Collapse
|
5
|
Savcheniuk MO, Tarasov OA, Zakharova OM, Korniienko LY, Zotsenko VM, Tsarenko TM. Detection of Streptococcus suis using the optimized real-time polymerase chain reaction protocol. REGULATORY MECHANISMS IN BIOSYSTEMS 2022. [DOI: 10.15421/022221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
The article presents the results of studies on the detection of Streptococcus suis by real-time polymerase chain reaction. Isolation and species identification of the studied isolates of streptococci was carried out according to morphological, cultural, biochemical and biological properties by conventional methods. The study of cultural characteristics of growth was carried out using conventional bacteriological methods on the brain heart infusion broth (BHI) and BHI agar with the addition of 5% sheep blood (blood BHI agar). To confirm biochemical properties as a confirmatory method, API 20 STREP test kit (bioMerieux, France) was used. In addition, to differentiate S. suis from the non-pathogenic species of streptococci, the hemolysis test was used. As a result of the studies, it was found that the use of the real-time PCR (polymerase chain reaction) method makes it possible to detect S. suis in an amount of 1 x 104 genome copies in the sample. All described validation parameters for the qualitative detection of S. suis DNA by real-time PCR meet international requirements, which guarantees accurate and reliable results. In Ukraine only a diagnostic test kit for convential PCR has been developed for the detection of swine streptococcosis. This approach is more time consuming and complex in comparison with the real-time PCR approach. We recommend that diagnostic laboratories implement this method in their practice. This will increase the number of effective diagnostic tools available to veterinarians on pig farms when they order laboratory tests. The high analytical sensitivity limit of a test is an essential parameter when screening is the focus, and obtaining false negative results causes a risk of the development of infection process among pig populations within infected herds. Our study showed that microbiological diagnostic methods to determine morphological and cultural properties can identify S. suis at the genus level. Determination of biochemical properties using the API 20 STREP test kit can be used to identify S. suis 1 and 2 serotypes. The conventional method and real-time PCR have 100% specificity and can be used to identify S. suis of different serotypes. Real-time PCR is a 2 to 4 times more sensitive limit than conventional PCR depending on the serotype being studied, and can be used to more accurately identify streptococcal DNA. It was found that the use of the real-time PCR method makes it possible to detect S. suis in an amount of 1 x 104 copies of the genome in the sample. Additionally, it was found that all the studied validation parameters of the qualitative method for determining S. suis DNA by real-time PCR meet international requirements, which guarantees accurate and reliable results.
Collapse
|
6
|
Takeshita N, Watanabe T, Ishida-Kuroki K, Sekizaki T. Transition of microbiota in chicken cecal droppings from commercial broiler farms. BMC Vet Res 2021; 17:10. [PMID: 33407476 PMCID: PMC7789685 DOI: 10.1186/s12917-020-02688-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 11/23/2020] [Indexed: 11/11/2022] Open
Abstract
Background Chickens are major sources of human nutrition worldwide, but the chicken intestinal microbiota can be a source of bacterial infection. The microbiota has potential to regulate the colonization of pathogens by competitive exclusion, production of antimicrobial compounds, and stimulation of the mucosal immune system. But information on the microbiota in commercial broiler chickens is limited because of the difficulty of conducting studies at commercial farms. To obtain fundamental information that can be used to control pathogens in chickens, we determined the 6-week dynamics of microbiota in chicken cecal droppings from commercial broiler farms. Results Cecal droppings from four chickens were collected once a week from 1 to 6 weeks of age at three commercial broiler farms. A total of 168 samples were collected from 7 flocks and subjected to 16S rRNA amplicon sequencing. Despite the farms have distinctly different climate conditions, the microbiota in the same growth stages were similar among farms. Moreover, as the chickens grew and the feed types were switched, the richness and diversity of the microbiota gradually increased and convergence of the composition of the microbiota was apparent. Notably, minor bacterial taxa (i.e. OTUs with relative abundance < 0.05%) within the microbiota were changed by the chicken age, switching of feed types, and presence of Campylobacter. In particular, the effects of switching of feed types on the microbiota were larger than the effects of age and Campylobacter. Conclusions Irrespective of the locations of the farms, the microbiota of chicken cecum, especially minor bacteria, was successively changed more affected by feed types than by ages. Switching of feed types inducing the alteration of the microbiota may be associated with the colonization of pathogens in the chicken gut. These results will also help with extrapolation of studies in experimental animals to those in the commercial farms. Supplementary Information The online version contains supplementary material available at 10.1186/s12917-020-02688-7.
Collapse
Affiliation(s)
- Nachiko Takeshita
- Research Center for Food Safety, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Takayasu Watanabe
- Research Center for Food Safety, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.,Present Address: Department of Chemistry, Nihon University School of Dentistry, Kanda-Surugadai 1-8-13, Chiyoda-ku, Tokyo, 101-8310, Japan
| | - Kasumi Ishida-Kuroki
- Research Center for Food Safety, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Tsutomu Sekizaki
- Research Center for Food Safety, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
| |
Collapse
|
7
|
Tan MF, Tan J, Zeng YB, Li HQ, Yang Q, Zhou R. Antimicrobial resistance phenotypes and genotypes of Streptococcus suis isolated from clinically healthy pigs from 2017 to 2019 in Jiangxi Province, China. J Appl Microbiol 2020; 130:797-806. [PMID: 32881196 DOI: 10.1111/jam.14831] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 08/18/2020] [Accepted: 08/18/2020] [Indexed: 12/22/2022]
Abstract
AIMS This study aimed to investigate the antimicrobial resistance (AMR) profiles and genotypes of Streptococcus suis from Jiangxi Province, China. METHODS AND RESULTS A total of 314 nasal swab samples were collected from clinically healthy pigs, with a positive isolation rate of S. suis of 34·08%. Antimicrobial susceptibility testing showed that more than 80% of the isolates were susceptible to vancomycin, penicillin, minocycline and chloramphenicol. A high frequency of resistance to clindamycin, tetracycline, clarithromycin and erythromycin was observed. All of the isolates were resistant to three or more categories of antimicrobials. The erm(B) and tet(O) served as the most frequent genotypes that contributed to lincosamide, macrolide and tetracycline resistances. A part of macrolide-resistant genotypes could not exhibit specific phenotypes. Finally, integrative and conjugative elements (ICEs) were identified in 28·97% of the isolates. CONCLUSIONS The multidrug resistance of S. suis has widely emerged in Jiangxi Province. The most prevalent resistance genes and genotypes were similar to those in other regions or countries. The presence of ICEs is increasing the risk of horizontal transfer of AMR genes. SIGNIFICANCE AND IMPACT OF THE STUDY The findings could provide guidance for the rational use of antimicrobial drugs and be helpful for monitoring the AMR information of S. suis in China.
Collapse
Affiliation(s)
- M-F Tan
- Institute of Animal Husbandry and Veterinary Science, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - J Tan
- Institute of Animal Husbandry and Veterinary Science, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Y-B Zeng
- Institute of Animal Husbandry and Veterinary Science, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - H-Q Li
- Institute of Animal Husbandry and Veterinary Science, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Q Yang
- Institute of Animal Husbandry and Veterinary Science, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - R Zhou
- State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China.,Cooperative Innovation Center of Sustainable Pig Production, Wuhan, China.,International Research Center for Animal Disease (Ministry of Science & Technology of China), Wuhan, China
| |
Collapse
|
8
|
Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer. Sci Rep 2020; 10:12580. [PMID: 32724214 PMCID: PMC7387495 DOI: 10.1038/s41598-020-69450-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 06/29/2020] [Indexed: 11/08/2022] Open
Abstract
MinION (Oxford Nanopore Technologies), a portable nanopore sequencer, was introduced in 2014 as a new DNA sequencing technology. MinION is now widely used because of its low initial start-up costs relative to existing DNA sequencers, good portability, easy-handling, real-time analysis and long-read output. However, differences in the experimental conditions used for 16S rRNA-based PCR can bias bacterial community assessments in samples. Therefore, basic knowledge about reliable experimental conditions is needed to ensure the appropriate use of this technology. Our study concerns the reliability of techniques for obtaining accurate and quantitative full-length 16S rRNA amplicon sequencing data for bacterial community structure assessment using MinION. We compared five PCR conditions using three independent mock microbial community standard DNAs and established appropriate, standardized, better PCR conditions among the trials. We then sequenced two mock communities and six environmental samples using Illumina MiSeq for comparison. Modifying the PCR conditions improved the sequencing quality; the optimized conditions were 35 cycles of 95 °C for 1 min, 60 °C for 1 min and 68 °C for 3 min. Our results provide important information for researchers to determine bacterial community using MinION accurately.
Collapse
|
9
|
16S rRNA Gene Amplicon Sequence Data from Feces of Five Species of Wild Animals in Japan. Microbiol Resour Announc 2020; 9:9/22/e00368-20. [PMID: 32467273 PMCID: PMC7256260 DOI: 10.1128/mra.00368-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We report 16S rRNA amplicon sequence data from feces from 58 wild boars, 60 feral raccoons, 9 wild Japanese badgers, 21 wild masked palm civets, and 8 wild raccoon dogs in Japan. The predominant bacterial taxa in the fecal microbiota were similar in part but varied among the animal species. We report 16S rRNA amplicon sequence data from feces from 58 wild boars, 60 feral raccoons, 9 wild Japanese badgers, 21 wild masked palm civets, and 8 wild raccoon dogs in Japan. The predominant bacterial taxa in the fecal microbiota were similar in part but varied among the animal species.
Collapse
|
10
|
16S rRNA Gene Amplicon Sequence Data from Feces of Wild Deer (Cervus nippon) in Japan. Microbiol Resour Announc 2020; 9:9/22/e00346-20. [PMID: 32467271 PMCID: PMC7256258 DOI: 10.1128/mra.00346-20] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We report 16S rRNA amplicon sequence data from feces of 109 wild deer in Japan. The dominant bacterial taxa in fecal microbiota of wild deer hunted between village and mountainous areas and those living on Miyajima Island and in Nara Park were similar but differed in abundance. We report 16S rRNA amplicon sequence data from feces of 109 wild deer in Japan. The dominant bacterial taxa in fecal microbiota of wild deer hunted between village and mountainous areas and those living on Miyajima Island and in Nara Park were similar but differed in abundance.
Collapse
|
11
|
16S rRNA Gene Amplicon Sequence Data from Chicken Cecal Feces from Vietnam and Thailand. Microbiol Resour Announc 2019; 8:8/32/e00781-19. [PMID: 31395649 PMCID: PMC6687936 DOI: 10.1128/mra.00781-19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Here, we report 16S rRNA amplicon sequence data from chicken cecal feces from Vietnam and Thailand. Lachnospiraceae, Ruminococcaceae, and Bacteroidaceae were dominant in cecal feces microbiota. Here, we report 16S rRNA amplicon sequence data from chicken cecal feces from Vietnam and Thailand. Lachnospiraceae, Ruminococcaceae, and Bacteroidaceae were dominant in cecal feces microbiota.
Collapse
|
12
|
Characterization of pig saliva as the major natural habitat of Streptococcus suis by analyzing oral, fecal, vaginal, and environmental microbiota. PLoS One 2019; 14:e0215983. [PMID: 31017953 PMCID: PMC6481863 DOI: 10.1371/journal.pone.0215983] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 04/11/2019] [Indexed: 11/19/2022] Open
Abstract
It is generally difficult to specify the sources of infection by which domestic animals may acquire pathogens. Through 16S rRNA gene amplicon sequencing, we compared the composition of microbiota in the saliva, vaginal mucus, and feces of pigs, and in swabs of feeder troughs and water dispensers collected from pig farms in Vietnam. The composition of the microbiota differed between samples in each sample group. Streptococcus, Actinobacillus, Moraxella, and Rothia were the most abundant genera and significantly discriminative in saliva samples, regardless of the plasticity and changeability of the composition of microbiota in saliva. Moreover, species assignment of the genus Streptococcus revealed that Streptococcus suis was exceptional in the salivary microbiota, due to being most abundant among the streptococcal species and sharing estimated proportions of 5.7%–9.4% of the total bacteria in saliva. Thus, pig oral microbiota showed unique characteristics in which the major species was the pig pathogen. On the other hand, β-diversity analysis showed that the microbiota in saliva was distinct from those in the others. From the above results, pig saliva was shown to be the major natural habitat of S. suis, and is suggested to be the most probable source of S. suis infection.
Collapse
|