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Esfandyari H, Jensen J. Simultaneous Bayesian estimation of genetic parameters for curves of weight, feed intake, and residual feed intake in beef cattle. J Anim Sci 2021; 99:6346789. [PMID: 34370859 PMCID: PMC8418639 DOI: 10.1093/jas/skab231] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 08/06/2021] [Indexed: 11/24/2022] Open
Abstract
Rates of gain and feed efficiency are important traits in most breeding programs for growing farm animals. The rate of gain (GAIN) is usually expressed over a certain age period and feed efficiency is often expressed as residual feed intake (RFI), defined as observed feed intake (FI) minus expected feed intake based on live weight (WGT) and GAIN. However, the basic traits recorded are always WGT and FI and other traits are derived from these basic records. The aim of this study was to develop a procedure for simultaneous analysis of the basic records and then derive linear traits related to feed efficiency without retorting to any approximation. A bivariate longitudinal random regression model was employed on 13,791 individual longitudinal records of WGT and FI from 2,827 bulls of six different beef breeds tested for their own performance in the period from 7 to 13 mo of age. Genetic and permanent environmental covariance functions for curves of WGT and FI were estimated using Gibbs sampling. Genetic and permanent covariance functions for curves of GAIN were estimated from the first derivative of the function for WGT and finally the covariance functions were extended to curves for RFI, based on the conditional distribution of FI given WGT and GAIN. Furthermore, the covariance functions were extended to include GAIN and RFI defined over different periods of the performance test. These periods included the whole test period as normally used when predicting breeding values for GAIN and RFI for beef bulls. Based on the presented method, breeding values and genetic parameters for derived traits such as GAIN and RFI defined longitudinally or integrated over (parts of) of the test period can be obtained from a joint analysis of the basic records. The resulting covariance functions for WGT, FI, GAIN, and RFI are usually singular but the method presented here does not suffer from the estimation problems associated with defining these traits individually before the genetic analysis. All the results are thus estimated simultaneously, and the set of parameters is consistent.
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Affiliation(s)
| | - Just Jensen
- Center for Quantitative Genetics and Genomics, Aarhus University, 8830 Tjele, Denmark
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2
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Ahlberg CM, Allwardt K, Broocks A, Bruno K, Taylor A, Mcphillips L, Krehbiel CR, Calvo-Lorenzo M, Richards CJ, Place SE, Desilva U, Vanoverbeke DL, Mateescu RG, Kuehn LA, Weaber R, Bormann J, Rolf MM. Characterization of water intake and water efficiency in beef cattle1,2. J Anim Sci 2020; 97:4770-4782. [PMID: 31740941 DOI: 10.1093/jas/skz354] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 11/18/2019] [Indexed: 11/13/2022] Open
Abstract
In the future, water may not be as readily available due to increases in competition from a growing human population, wildlife, and other agricultural sectors, making selection for water efficiency of beef cattle increasingly important. Substantial selection emphasis has recently been placed on feed efficiency in an effort to reduce production costs, but no emphasis has been placed on making cattle more water efficient due to lack of data. Thus, the objective of this study was to calculate water efficiency metrics for cattle and evaluate their relationship to growth, feed intake (FI), and feed efficiency. Individual daily FI and water intake (WI) records were collected on 578 crossbred steers over a 70-d test period. Animals with low water intake ate less feed, had lower gains, and were more water efficient (as defined by water to gain ratio, W/G, and residual water intake, RWI). However, the amount of water consumed by animals had minimal phenotypic relationship with feed efficiency (residual feed intake [RFI], R2 = 0.1050 and feed to gain ratio (F/G) ratio R2 = 0.0726). Cattle that had low DMI consumed less water, had lower gains, had lower RFI, and had higher F/G. The level of feed consumed had minimal relationship with water efficiency. WI, W/G, RWI, and ADG had moderate heritability estimates of 0.39, 0.39, 0.37, and 0.37, respectively. High heritability estimates were observed for DMI and RFI (0.67 and 0.65, respectively). Feed to gain had a low heritability estimate of 0.16. WI had a strong positive genetic correlation with W/G (0.99) and RWI (0.88), thus selecting for decreased WI should also make cattle more water efficient. The genetic correlation between WI and ADG was 0.05; thus, selecting for low WI cattle should have little effect on growth. There is a low to moderate genetic correlation between WI and DMI (0.34). RWI has a positive genetic correlation with W/G ratio (0.89) and F/G ratio (0.42) and is negatively genetically correlated with RFI (-0.57). Water to gain and F/G had a strong positive genetic correlation (0.68). RFI has a positive genetic correlation with W/G ratio (0.37) and F/G (0.88). Minimal antagonisms seem to be present between WI and ADG, although it should be noted that standard errors were large and often not significantly different from zero due to the small sample size. However, care should be taken to ensure that unintended changes do not occur in DMI or other production traits and incorporation of WI into a selection index would likely prove to be the most effective method for selection.
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Affiliation(s)
- Cashley M Ahlberg
- Department of Animal Sciences and Industry, Kansas State University, Manhattan, KS 66506
| | - Kristi Allwardt
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | - Ashley Broocks
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | - Kelsey Bruno
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | - Alexandra Taylor
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | - Levi Mcphillips
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | - Clint R Krehbiel
- Department of Animal Science, Oklahoma State University, Stillwater, OK.,Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE
| | - Michelle Calvo-Lorenzo
- Department of Animal Science, Oklahoma State University, Stillwater, OK.,Elanco Animal Health, Greenfield, IN
| | - Chris J Richards
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | - Sara E Place
- Department of Animal Science, Oklahoma State University, Stillwater, OK.,National Cattleman's Beef Association, Centennial, CO
| | - Udaya Desilva
- Department of Animal Science, Oklahoma State University, Stillwater, OK
| | | | - Raluca G Mateescu
- Department of Animal Science, University of Florida, Gainesville, FL
| | - Larry A Kuehn
- USDA, ARS, Roman L. Hruska U.S. Meat Animal Research Center, Clay Center, NE
| | - Robert Weaber
- Department of Animal Sciences and Industry, Kansas State University, Manhattan, KS 66506
| | - Jennifer Bormann
- Department of Animal Sciences and Industry, Kansas State University, Manhattan, KS 66506
| | - Megan M Rolf
- Department of Animal Sciences and Industry, Kansas State University, Manhattan, KS 66506
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3
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Difford G, Løvendahl P, Veerkamp R, Bovenhuis H, Visker M, Lassen J, de Haas Y. Can greenhouse gases in breath be used to genetically improve feed efficiency of dairy cows? J Dairy Sci 2020; 103:2442-2459. [DOI: 10.3168/jds.2019-16966] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 11/21/2019] [Indexed: 01/30/2023]
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4
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Kelly DN, Murphy C, Sleator RD, Judge MM, Conroy SB, Berry DP. Feed efficiency and carcass metrics in growing cattle1. J Anim Sci 2020; 97:4405-4417. [PMID: 31593986 DOI: 10.1093/jas/skz316] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 10/03/2019] [Indexed: 01/25/2023] Open
Abstract
Some definitions of feed efficiency such as residual energy intake (REI) and residual gain (RG) may not truly reflect production efficiency. The energy sinks used in the derivation of the traits include metabolic live-weight; producers finishing cattle for slaughter are, however, paid on the basis of carcass weight, as opposed to live-weight. The objective of the present study was to explore alternative definitions of REI and RG which are more reflective of production efficiency, and quantify their relationship with performance, ultrasound, and carcass traits across multiple breeds and sexes of cattle. Feed intake and live-weight records were available on 5,172 growing animals, 2,187 of which also had information relating to carcass traits; all animals were fed a concentrate-based diet representative of a feedlot diet. Animal linear mixed models were used to estimate (co)variance components. Heritability estimates for all derived REI traits varied from 0.36 (REICWF; REI using carcass weight and carcass fat as energy sinks) to 0.50 (traditional REI derived with the energy sinks of both live-weight and ADG). The heritability for the RG traits varied from 0.24 to 0.34. Phenotypic correlations among all definitions of the REI traits ranged from 0.90 (REI with REICWF) to 0.99 (traditional REI with REI using metabolic preslaughter live-weight and ADG). All were different (P < 0.001) from one suggesting reranking of animals when using different definitions of REI to identify efficient cattle. The derived RG traits were either weakly or not correlated (P > 0.05) with the ultrasound and carcass traits. Genetic correlations between the REI traits with carcass weight, dressing difference (i.e., live-weight immediately preslaughter minus carcass weight) and dressing percentage (i.e., carcass weight divided by live-weight immediately preslaughter) implies that selection on any of the REI traits will increase carcass weight, lower the dressing difference and increase dressing percentage. Selection on REICW (REI using carcass weight as an energy sink), as opposed to traditional REI, should increase the carcass weight 2.2 times slower but reduce the dressing difference 4.3 times faster. While traditionally defined REI is informative from a research perspective, the ability to convert energy into live-weight gain does not necessarily equate to carcass gain, and as such, traits such as REICW and REICWF provide a better description of production efficiency for feedlot cattle.
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Affiliation(s)
- David N Kelly
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, Ireland.,Department of Biological Sciences, Cork Institute of Technology, Bishopstown, Cork, Co. Cork, Ireland
| | - Craig Murphy
- Department of Biological Sciences, Cork Institute of Technology, Bishopstown, Cork, Co. Cork, Ireland
| | - Roy D Sleator
- Department of Biological Sciences, Cork Institute of Technology, Bishopstown, Cork, Co. Cork, Ireland
| | - Michelle M Judge
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, Ireland
| | - Stephen B Conroy
- Irish Cattle Breeding Federation, Highfield House, Shinagh, Bandon, Co. Cork, Ireland
| | - Donagh P Berry
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, Ireland
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Santana M, Oliveira G, Gomes R, Silva S, Leme P, Stella T, Mattos E, Rossi P, Baldi F, Eler J, Ferraz J. Genetic parameter estimates for feed efficiency and dry matter intake and their association with growth and carcass traits in Nellore cattle. Livest Sci 2014. [DOI: 10.1016/j.livsci.2014.06.002] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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6
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Residual feed intake: a nutritional tool for genetic improvement. Trop Anim Health Prod 2013; 45:1649-61. [DOI: 10.1007/s11250-013-0435-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/24/2013] [Indexed: 10/26/2022]
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7
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Do DN, Strathe AB, Jensen J, Mark T, Kadarmideen HN. Genetic parameters for different measures of feed efficiency and related traits in boars of three pig breeds. J Anim Sci 2013; 91:4069-79. [PMID: 23825329 DOI: 10.2527/jas.2012-6197] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Residual feed intake (RFI) is commonly used as a measure of feed efficiency at a given level of production. A total of 16,872 pigs with their pedigree traced back as far as possible was used to estimate genetic parameters for RFI, growth performance, food conversion ratio (FCR), body conformation, and feeding behavior traits in 3 Danish breeds [Duroc (DD), Landrace (LL), and Yorkshire (YY)]. Two measures of RFI were considered: residual feed intake 1 (RFI1) was calculated based on regression of daily feed intake (DFI) from 30 to 100 kg on initial test weight and ADG from 30 to 100 kg (ADG2). Residual feed intake 2 (RFI2) was as RFI1, except it was also regressed with respect to backfat (BF). The estimated heritabilities for RFI1 and RFI2 were 0.34 and 0.38 in DD, 0.34 and 0.36 in LL, and 0.39 and 0.40 in YY, respectively. The heritabilities ranged from 0.32 (DD) to 0.54 (LL) for ADG2, from 0.54 (DD) to 0.67 (LL) for BF, and from 0.13 (DD) to 0.19 (YY) for body conformation. Feeding behavior traits including DFI, number of visits to feeder per day (NVD), total time spent eating per day (TPD), feed intake rate (FR), feed intake per visit (FPV), and time spent eating per visit (TPV) were moderately to highly heritable. Residual feed intake 2 was genetically independent of ADG2 and BF in all breeds, except it had low genetic correlation to ADG2 in YY (0.2). Residual feed intake 1 was also genetically independent of ADG2 in DD and LL. Both RFI traits had strong genetic correlations with DFI (0.85 to 0.96) and FCR (0.76 to 0.99). They had low or no genetic correlations with feeding behavior traits. Unfavorable genetic correlations were found between ADG2 and both BF and DFI. Among feeding behavior traits, DFI had low genetic correlations to other traits in all breeds. High and negative genetic correlations were also found between TPD with FR (-0.79 in YY to -0.88 in DD), NVD, and TPD (-0.91 in DD to -0.94 in YY) and between NVD and FPV (-0.83 in DD to -0.91 in YY) in all breeds. The genetic trend for feed efficiency was favorable in all breeds regardless of the definition of feed efficiency used. In summary, RFI1 and RFI2 were heritable and selection for reduced RFI2 can be performed without adversely affecting ADG and BF and could replace FCR in the selection index for the Danish pig breeds. Selection could also be based on RFI1 for breeds with fewer concerns about a negative effect of BF or for breeds that do not have BF records.
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Affiliation(s)
- D N Do
- Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, 1870 Frederiksberg C, Denmark
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Rekaya R, Sapp RL, Wing T, Aggrey SE. Genetic evaluation for growth, body composition, feed efficiency, and leg soundness. Poult Sci 2013; 92:923-9. [PMID: 23472015 DOI: 10.3382/ps.2012-02649] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
A multiple trait linear-threshold model was used to analyze data for BW, residual feed intake, breast meat yield (BMY), conformation score (CS), area (AR), tibial dyschondroplasia, valgus, varus, and rotated tibia. Leg soundness traits were considered as binary responses. At the liability scale, the model included the fixed effects of flock-week of hatch, and sex of the bird and the genetic additive effect, and the error terms as random. The random maternal effect was included in the model only for BW. A full Bayesian implementation of the model was straightforward even though large number of traits and missing records were present. As expected, binary traits have the lowest heritability. Heritability ranged from 0.12 for tibial dyschondroplasia to 0.44 for BMY. Genetic correlations between BW and conformation traits were moderate to high. Residual feed intake was negatively correlated with BW (-0.15), AR (-0.13), BMY (-0.04), and CS (-0.12). Genetic correlation between leg soundness traits were generally low and negative with the exception of the correlation between valgus and varus (-0.70) and between varus and rotated tibia (-0.39). Genetic correlations between BW, BMY, CS, and AR with leg soundness traits were in general negative and low in magnitude. Thus, selecting for improved leg soundness will have minimal effect on BW and carcass traits. Furthermore, genetic improvement in residual feed intake will result in improvements in carcass traits. Simultaneous genetic improvement in leg soundness and innovative husbandry practices should improve broiler welfare without significant adverse effects on production efficiency.
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Affiliation(s)
- R Rekaya
- Department of Animal and Dairy Science, University of Georgia, Athens, GA, USA.
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Berry DP, Crowley JJ. CELL BIOLOGY SYMPOSIUM: Genetics of feed efficiency in dairy and beef cattle1. J Anim Sci 2013; 91:1594-613. [DOI: 10.2527/jas.2012-5862] [Citation(s) in RCA: 215] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- D. P. Berry
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, Ireland
| | - J. J. Crowley
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta T6G 2P5, Canada
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Crowley JJ, Evans RD, Mc Hugh N, Pabiou T, Kenny DA, McGee M, Crews DH, Berry DP. Genetic associations between feed efficiency measured in a performance test station and performance of growing cattle in commercial beef herds. J Anim Sci 2011; 89:3382-93. [DOI: 10.2527/jas.2011-3836] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Campo JL, Turrado H. Experimental comparison between selection for residual feed consumption and feed conversion ratio in Tribolium. J Anim Breed Genet 2011. [DOI: 10.1111/j.1439-0388.1998.tb00346.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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12
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Phenotypic variation in residual food intake of mice at different ages and its relationship with efficiency of growth, maintenance and body composition. ACTA ACUST UNITED AC 2010. [DOI: 10.1017/s1357729800028381] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
AbstractFood intake and body weight of 119 mice was measured from 3 to 18 weeks of age. Residual food intake was calculated for each week as the variation in food intake independent of variation in weight gain, weight maintained and sex. Growth efficiency and maintenance requirement were calculated by fitting curves to data from 3 to 18 weeks. The repeatability of residual food intake was low in young mice, but increased as they matured. Growth efficiency was correlated with residual food intake in very young mice. Residual food intake was not correlated with maintenance requirement in young mice, but as mice matured the correlation of residual food intake with maintenance requirement increased to 0·6. Body composition at maturity was correlated with residual food intake and maintenance requirement of mature mice, but a large proportion of the variation in residual food intake and maintenance requirement was independent of body composition. The results suggest that the age at which residual food intake is measured is important if it is to be used as a criterion for selection for efficiency.
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Genetic and phenotypic relationships between food intake, growth, efficiency and body composition of mice post weaning and at maturity. ACTA ACUST UNITED AC 2010. [DOI: 10.1017/s1357729800009917] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
AbstractGenetic and phenotypic variation in post-weaning growth, food intake, efficiency and body composition of mice post weaning and at maturity, were examined to determine whether genetic variation in efficiency exists and to predict likely responses to selection for increased food efficiency in post-weaning animals. Genetic variation was found for average daily gain, mid-weight, daily food intake and proportion of body fat both post weaning and at maturity. Residual food intake calculated from phenotypic regression had a heritability of 0·27 (s.e. 0·06) post weaning and 0·24 (s.e. 0·08) at maturity, and was very similar to residual food intake calculated using genetic (co)variances, indicating genetic variation in efficiency exists in post-weaning and mature mice. Although the phenotypic correlation between residual food intake post weaning and at maturity was low (0·29), the genetic correlation was moderate (0·60). This suggests that selection for efficiency in young animals will lead to a correlated improvement in maintenance efficiency of mature animals. Genetic correlation estimates suggest that correlated responses in other traits would include a concomitant decrease in post-weaning food intake, a slight increase in weight at weaning, a slight increase in post-weaning fat proportion and little or no change in post-weaning growth. In mature animals there will be an associated decrease in daily food intake and a slight decrease in mature size and body fat proportion. The results suggest that residual food intake of young animals might be a suitable selection criteria for use in livestock species to improve efficiency in young animals and also in the breeding herd.
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Aggrey SE, Karnuah AB, Sebastian B, Anthony NB. Genetic properties of feed efficiency parameters in meat-type chickens. Genet Sel Evol 2010; 42:25. [PMID: 20584334 PMCID: PMC2901204 DOI: 10.1186/1297-9686-42-25] [Citation(s) in RCA: 123] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2010] [Accepted: 06/29/2010] [Indexed: 12/02/2022] Open
Abstract
Background Feed cost constitutes about 70% of the cost of raising broilers, but the efficiency of feed utilization has not kept up the growth potential of today's broilers. Improvement in feed efficiency would reduce the amount of feed required for growth, the production cost and the amount of nitrogenous waste. We studied residual feed intake (RFI) and feed conversion ratio (FCR) over two age periods to delineate their genetic inter-relationships. Methods We used an animal model combined with Gibb sampling to estimate genetic parameters in a pedigreed random mating broiler control population. Results Heritability of RFI and FCR was 0.42-0.45. Thus selection on RFI was expected to improve feed efficiency and subsequently reduce feed intake (FI). Whereas the genetic correlation between RFI and body weight gain (BWG) at days 28-35 was moderately positive, it was negligible at days 35-42. Therefore, the timing of selection for RFI will influence the expected response. Selection for improved RFI at days 28-35 will reduce FI, but also increase growth rate. However, selection for improved RFI at days 35-42 will reduce FI without any significant change in growth rate. The nature of the pleiotropic relationship between RFI and FCR may be dependent on age, and consequently the molecular factors that govern RFI and FCR may also depend on stage of development, or on the nature of resource allocation of FI above maintenance directed towards protein accretion and fat deposition. The insignificant genetic correlation between RFI and BWG at days 35-42 demonstrates the independence of RFI on the level of production, thereby making it possible to study the molecular, physiological and nutrient digestibility mechanisms underlying RFI without the confounding effects of growth. The heritability estimate of FCR was 0.49 and 0.41 for days 28-35 and days 35-42, respectively. Conclusion Selection for FCR will improve efficiency of feed utilization but because of the genetic dependence of FCR and its components, selection based on FCR will reduce FI and increase growth rate. However, the correlated responses in both FI and BWG cannot be predicted accurately because of the inherent problem of FCR being a ratio trait.
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Affiliation(s)
- Samuel E Aggrey
- Department of Poultry Science, University of Georgia, Athens, GA 30602, USA.
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15
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Lancaster PA, Carstens GE, Crews DH, Welsh TH, Forbes TDA, Forrest DW, Tedeschi LO, Randel RD, Rouquette FM. Phenotypic and genetic relationships of residual feed intake with performance and ultrasound carcass traits in Brangus heifers. J Anim Sci 2009; 87:3887-96. [PMID: 19717782 DOI: 10.2527/jas.2009-2041] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The objective of this study was to characterize residual feed intake (RFI) and to estimate phenotypic and genetic correlations with performance and ultrasound carcass traits in growing heifers. Four postweaning feed efficiency trials were conducted using 468 Brangus heifers. The complete Brangus pedigree file from Camp Cooley Ranch (Franklin, TX), which included 31,215 animals, was used to generate genetic parameter estimates. The heifer progeny from 223 dams were sired by 36 bulls, whereas the complete pedigree file contained 1,710 sires and 8,191 dams. Heifers were individually fed a roughage-based diet (ME = 1.98 Mcal/kg of DM) using Calan gate feeders for 70 d. Heifer BW was recorded weekly and ultrasound measures of 12th- to 13th-rib fat thickness (BF) and LM area (LMA) obtained at d 0 and 70. Residual feed intake (RFIp) was computed as actual minus predicted DMI, with predicted DMI determined by linear regression of DMI on mid-test BW(0.75) (MBW) and ADG with trial, trial x MBW, and trial x ADG as random effects. Overall means for ADG, DMI, and RFI were 1.01 (SD = 0.15), 9.51 (SD = 1.02), and 0.00 (SD = 0.71) kg/d, respectively. Stepwise regression analysis revealed that inclusion of gain in BF and final LMA into the base model increased the R(2) (0.578 vs. 0.534) and accounted for 9% of the variation in DMI not explained by MBW and ADG (RFIp). Residual feed intake and carcass-adjusted RFI (RFIc) were strongly correlated phenotypically and genetically with DMI and FCR, but not with ADG or MBW. Gain in BF was phenotypically correlated (P < 0.05) with RFIp (0.22), but not with FCR or RFIc; however, final BF was genetically correlated (P < 0.05) with RFIp (0.36) and RFIc (0.39). Gain in LMA was weakly phenotypically correlated with FCR, but not with RFIp or RFIc; however, gain in LMA was strongly genetically correlated with RFIp (0.55) and RFIc (0.77). The Spearman rank correlation between RFIp and RFIc was high (0.96). These results suggest that adjusting RFI for ultrasound carcass composition traits will facilitate selection phenotypically independent of growth, body size, and carcass composition; however, genetic relationships may still exist between RFI and carcass composition.
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Affiliation(s)
- P A Lancaster
- Department of Animal Science, Oklahoma State University, Stillwater 74078, USA
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Mader CJ, Montanholi YR, Wang YJ, Miller SP, Mandell IB, McBride BW, Swanson KC. Relationships among measures of growth performance and efficiency with carcass traits, visceral organ mass, and pancreatic digestive enzymes in feedlot cattle1,2. J Anim Sci 2009; 87:1548-57. [DOI: 10.2527/jas.2008-0914] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Hoque MA, Hosono M, Oikawa T, Suzuki K. Genetic parameters for measures of energetic efficiency of bulls and their relationships with carcass traits of field progeny in Japanese Black cattle1. J Anim Sci 2009; 87:99-106. [DOI: 10.2527/jas.2007-0766] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Gilbert H, Bidanel JP, Gruand J, Caritez JC, Billon Y, Guillouet P, Lagant H, Noblet J, Sellier P. Genetic parameters for residual feed intake in growing pigs, with emphasis on genetic relationships with carcass and meat quality traits. J Anim Sci 2007; 85:3182-8. [PMID: 17785600 DOI: 10.2527/jas.2006-590] [Citation(s) in RCA: 141] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Data were collected over the first 4 generations of a divergent selection experiment for residual feed intake of Large White pigs having ad libitum access to feed. This data set was used to obtain estimates of heritability for residual feed intake and genetic correlations (r(a)) between this trait and growth, carcass, and meat quality traits. Individual feed intake of group-housed animals was measured by single-space electronic feeders. Upward and downward selection lines were maintained contemporarily, with 6 boars and 35 to 40 sows per line and generation. Numbers of records were 793 for residual feed intake (RFI1) of boar candidates for selection issued from first-parity (P1) litters and tested over a fixed BW range (35 to 95 kg) and 657 for residual feed intake (RFI2) and growth, carcass, and meat quality traits of castrated males and females issued from second-parity (P2) litters and tested from 28 to 107 kg of BW. Variance and covariance components were estimated using REML methodology applied to a series of multitrait animal models, which always included the criterion for selection as 1 of the traits. Estimates of heritability for RFI1 and RFI2 were 0.14 +/- 0.03 and 0.24 +/- 0.03, respectively, whereas the estimate of r(a) between the 2 traits was 0.91 +/- 0.08. Estimates of r(a) indicated that selection for low residual feed intake has the potential to improve feed conversion ratio and reduce daily feed intake, with minimal correlated effect for ADG of P2 animals. Estimates of r(a) between RFI2 and body composition traits of P2 animals were positive for traits related to the amount of fat depots (r(a) = 0.44 +/- 0.16 for carcass backfat thickness) and negative for carcass lean meat content (r(a) = -0.55 +/- 0.14). There was a tendency for a negative genetic correlation between RFI2 and carcass dressing percent (r(a) = -0.36 +/- 0.21). Moreover, selection for low residual feed intake is expected, through lower ultimate pH and lighter color, to decrease pork quality (r(a) = 0.77 +/- 0.14 between RFI2 and a meat quality index intended to predict the ratio of the weight of ham after curing and cooking to the weight of defatted and boneless fresh ham).
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Affiliation(s)
- H Gilbert
- INRA, UR337 Génétique Quantitative et Appliquée, 78352 Jouy-en-Josas, France.
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Cammack KM, Leymaster KA, Jenkins TG, Nielsen MK. Estimates of genetic parameters for feed intake, feeding behavior, and daily gain in composite ram lambs. J Anim Sci 2007; 83:777-85. [PMID: 15753331 DOI: 10.2527/2005.834777x] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Our objective was to estimate genetic parameters for feed intake, feeding behavior, and ADG in composite ram lambs ((1/2) Columbia, (1/4) Hampshire, (1/4) Suffolk). Data were collected from 1986 to 1997 on 1,239 ram lambs from approximately 11 to 17 wk of age at the U.S. Meat Animal Research Center near Clay Center, NE. Feeding equipment consisted of an elevated pen with an entrance chute that permitted access to the feeder by only one ram lamb at a time, with disappearance of feed measured by an electronic weighing system. Ram lambs were grouped 11 per pen from 1986 to 1989, and nine per pen from 1990 to 1997. Data were edited to exclude invalid feeding events, and approximately 80% of the data remained after edits were applied. Traits analyzed were daily feed intake (DFI), event feed intake (EFI), residual feed intake (RFI), daily feeding time (DFT), event feeding time (EFT), number of daily feeding events (DFE), and ADG. Feed intake traits of DFI and EFI had estimated heritabilities of 0.25 and 0.33, respectively, whereas estimated heritability of RFI was 0.11. Heritability estimates for feeding behavior traits, including DFT, EFT, and DFE, ranged from 0.29 to 0.36. Average daily gain had an estimated heritability of 0.26. Genetic correlations were positive between all pairs of traits, except for RFI and ADG, and that estimate was essentially zero. Phenotypic correlations were generally similar to genetic correlations. Genetic correlations were large (0.80) between DFI and ADG, intermediate between DFI and RFI (0.61) and between DFT and DFE (0.55), and low (0.17 to 0.31) for the other pairs of traits, with the exception of RFI and ADG (-0.03). Genetic correlations between behavioral traits were greater than correlations between behavioral traits and measures of feed intake or ADG; however, selection for ADG and/or feed intake would be expected to cause some changes in feeding behavior.
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Affiliation(s)
- K M Cammack
- Department of Animal Science, University of Nebraska, Lincoln 68583-0908, USA
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McDonald JM, Nielsen MK. Renewed selection for heat loss in mice: Direct responses and correlated responses in feed intake, body weight, litter size, and conception rate1. J Anim Sci 2007; 85:658-66. [PMID: 17060417 DOI: 10.2527/jas.2006-465] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Divergent selection in mice was renewed in 3 independent replicates for high (MH) and low (ML) heat loss. An unselected control (MC) was maintained in all replicates. Heat loss was measured for individual male mice for 15 h, overnight in direct calorimeters. After 16 initial generations of selection followed by 26 generations of relaxed selection, divergent selection resumed for 9 generations. The realized selection applied was very close to the maximum possible selection according to the criteria and protocol. Selection differentials were greater for high than for low selection due to greater variation in the MH line. When corrected for SD, standardized selection differentials were similar for MH and ML selection. Unintended selection in MC was negligible. Realized heritability for divergence was 0.14 +/- 0.01, which was considerably less than that realized during the initial generations of selection (0.28 +/- 0.03). Realized heritabilities for MH selection (0.16 +/- 0.05) and for ML selection (0.07 +/- 0.06) were less, especially for ML selection, than were observed in the earlier generations. The difference in heat loss between MH and ML males was 55.7% of the MC mean at generation 51, compared with a difference of 53.6% in generation 15; this difference had decreased to 34.4% at the end of the relaxed selection (generation 42). For feed intake between 8 and 11 wk, MH and ML males differed by 34.0% of the MC mean by the end of the selection process. Body weight at 12 wk for MH and ML males was less than for MC males. Litter size response was positively related to the heat loss response. Conception rate was poorer in MH matings than in MC and ML matings.
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Affiliation(s)
- J M McDonald
- Department of Animal Science, University of Nebraska, Lincoln, NE 68583-0908, USA
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Baker SD, Szasz JI, Klein TA, Kuber PS, Hunt CW, Glaze JB, Falk D, Richard R, Miller JC, Battaglia RA, Hill RA. Residual feed intake of purebred Angus steers: Effects on meat quality and palatability. J Anim Sci 2006; 84:938-45. [PMID: 16543572 DOI: 10.2527/2006.844938x] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Relationships between residual feed intake (RFI) and other performance variables were determined using 54 purebred Angus steers. Individual feed intake and BW gain were recorded during a 70-d post-weaning period to calculate RFI. After the 70-d post-weaning test, steers were fed a finishing ration to a similar fat thickness (FT), transported to a commercial facility, and slaughtered. A subsample of carcasses (n = 32) was selected to examine the relationships among RFI, meat quality, and palatability. Steers were categorized into high (> 0.5 SD above the mean; n = 16), medium (mid; +/- 0.5 SD from the mean; n = 21), and low (< 0.5 SD below the mean; n = 17) RFI groups. No differences were detected in ADG, initial BW, and d 71 BW among the high, mid, and low RFI steers. Steers from the high RFI group had a greater DMI (P = 0.004) and feed conversion ratio (FCR; DMI:ADG; P = 0.002) compared with the low RFI steers. Residual feed intake was positively correlated with DMI (r = 0.54; P = 0.003) and FCR (r = 0.42; P = 0.002), but not with initial BW, d 71 BW, d 71 ultrasound FT, initial ultrasound LM area, d 71 ultrasound LM area, or ADG. The FCR was positively correlated with initial BW (r = 0.46; P = 0.0005), d 71 BW (r = 0.34; P = 0.01), and DMI (r = 0.40; P = 0.003) and was negatively correlated with ADG (r = -0.65; P = 0.001). There were no differences among RFI groups for HCW, LM area, FT, KPH, USDA yield grade, marbling score, or quality grade. Reflectance color b* scores of steaks from high RFI steers were greater (P = 0.02) than those from low RFI steers. There was no difference between high and low RFI groups for LM calpastatin activity. Warner-Bratzler shear force and sensory panel tenderness and flavor scores of steaks were similar across RFI groups. Steaks from high RFI steers had lower (P = 0.04) off-flavor scores than those from low RFI steers. Cook loss percentages were greater (P = 0.005) for steaks from low RFI steers than for those from mid RFI steers. These data support current views that RFI is independent of ADG, but is correlated with DMI and FCR. Importantly, the data also support the hypothesis that there is no relationship between RFI and beef quality in purebred Angus steers.
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Affiliation(s)
- S D Baker
- Department of Animal and Veterinary Science, University of Idaho, Moscow, 83844, USA
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Hoque M, Arthur P, Hiramoto K, Oikawa T. Genetic parameters for carcass traits of field progeny and their relationships with feed efficiency traits of their sire population for Japanese Black cattle. Livest Sci 2006. [DOI: 10.1016/j.livprodsci.2005.09.006] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Snowder GD, Van Vleck LD. Estimates of genetic parameters and selection strategies to improve the economic efficiency of postweaning growth in lambs. J Anim Sci 2004; 81:2704-13. [PMID: 14601873 DOI: 10.2527/2003.81112704x] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The objectives of this study were to estimate (co)variance components for growth and feed efficiency measures, and to compare selection strategies to improve economic efficiency of gain. Variance components for pre- and postweaning growth, body weight, and measures of feed efficiency were estimated from data collected on 1,047 Targhee lambs over 7 yr. Approximately 21 d after weaning, lambs were group-fed for 4 wk, with ad libitum access to a diet of 37% whole barley grain and 63% pelleted alfalfa hay. Lambs were then individually fed for 6 wk. Lambs were then returned to group feeding for another 4-wk period. The mean feed conversion ratio (gain/intake) for the individual feeding period was 0.11. Mean postweaning ADG for the total 14-wk feeding period was 0.26 kg. (Co)variance components were estimated from single- and two-trait animal models using REML. The selection strategies compared included direct selection, index selection, and restricted index selection. Estimates of (co)variances derived from single- and two-trait models were similar, except for mid-test body weight. Preweaning growth had a low heritability estimate (0.03 +/- 0.04) compared with postweaning growth measures (0.25 to 0.39), but all measures of growth were highly correlated (r2 > 0.98). Heritability estimates of measures of gain efficiency were variable (total feed intake = 0.39; feed conversion ratio = 0.26; residual feed intake = 0.26). Total feed intake was strongly correlated genetically with feed conversion ratio (0.79) and residual feed intake (0.77). The estimate of genetic correlation between feed conversion ratio and residual feed intake was low (0.23). Comparison of selection strategies showed the superiority of index selection (ADG, total feed, body weight) for economic improvement compared with other strategies. Economic response to direct selection for ADG was at least twice that for direct selection for feed conversion ratio or against total feed intake, and that for restricted indices (selecting against residual feed, while holding body weight and/or gain constant). Selection for ADG may be a practical approach for indirectly improving efficiency of gain in lambs.
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Affiliation(s)
- G D Snowder
- USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE 68933, USA.
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Genetic and phenotypic relationships among different measures of growth and feed efficiency in young Charolais bulls. ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s0301-6226(00)00243-8] [Citation(s) in RCA: 163] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Jensen J, Hohenboken WD, Madsen P, Andersen BB. Sire × Nutrition Interactions and Genetic Parameters for Energy Intake, Production and Efficiency of Nutrient Utilization in Young Bulls, Heifers and Lactating Cows. ACTA AGR SCAND A-AN 1995. [DOI: 10.1080/09064709509415835] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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