A Recent Bat Survey Reveals Bukit Barisan Selatan Landscape as a Chiropteran Diversity Hotspot in Sumatra

Phylogenetic and genetic variation analysis of lesser short-nosed fruit bat Cynopterus brachyotis (Müller 1838) on Java island, Indonesia, inferred from mitochondrial D-loop

BACKGROUND

Cynopterus brachyotis (Müller 1838) is a generalist and widespread fruit bat species which inhabits different types of habitats in Southeast Asia. This species plays an essential role as a seed disperser and pollinator. Morphological study and phylogenetic analysis using mtDNA markers (cyt-b and D-loop) revealed that this species had two different forms in peninsular Malaysia and Borneo and six lineages in Southeast Asia that lead to new species formation. In addition, this species is also reported to have high genetic diversity in Malaysia and Thailand based on the D-loop sequence. However, a phylogenetic and genetic variation study of C. brachyotis in Indonesia has not been conducted yet. These two studies are important as additional information for taxonomic and population genetic studies of this species. Thus, we performed the phylogenetic and genetic diversity analysis of the C. brachyotis population collected from seven habitats on Java island, including open-fragmented habitats (urban, coffee and rubber plantations, pine forest, secondary forest, mangrove forest) and closed habitats (natural forest) using the mtDNA D-loop marker.

RESULTS

The phylogenetic tree using the Bayesian inference (BI) and genetic distance using the Kimura-2 parameter (K-2P) demonstrated that 33 individuals of C. brachyotis from seven habitats on Java island overlapped between habitats and could not be distinguished according to their habitats and lineage. Intrapopulation and intraspecies analysis revealed high haplotype diversity of this species on Java island (Hd = 0.933-1.000). The haplotype network was split into two haplogroups, showing haplotype sharing between habitats. These phylogenetic and genetic variations analysis of C. brachyotis bats on Java island indicated that this species is widespread and adapt to different habitats.

CONCLUSIONS

This study of C. brachyotis on Java island collected from seven different habitats has overlapped and genetically close and has high genetic variation. Our results provide the first reported study of C. brachyotis on Java island and provide data to understand the phylogenetic and genetic diversity of this species in Indonesia.

Sampling flying bats with thermal and near-infrared imaging and ultrasound recording: hardware and workflow for bat point counts

Bat communities can usually only be comprehensively monitored by combining ultrasound recording and trapping techniques. Here, we propose bat point counts, a novel, single method to sample all flying bats. We designed a sampling rig that combines a thermal scope to detect flying bats and their flight patterns, an ultrasound recorder to identify echolocating bat calls, and a near-infrared camera and LED illuminator to photograph bat morphology. We evaluated the usefulness of the flight pattern information, echolocation call recordings, and near-infrared photographs produced by our sampling rig to determine a workflow to process these heterogenous data types. We present a conservative workflow to enable taxonomic discrimination and identification of bat detections. Our sampling rig and workflow allowed us to detect both echolocating and non-echolocating bats and we could assign 84% of the detections to a guild. Subsequent identification can be carried out with established methods such as taxonomic keys and call libraries, based on the visible morphological features and echolocation calls. Currently, a higher near-infrared picture quality is required to resolve more detailed diagnostic morphology, but there is considerable potential to extract more information with higher-intensity illumination. This is the first proof-of-concept for bat point counts, a method that can passively sample all flying bats in their natural environment.

ChiroVox: a public library of bat calls

Recordings of bat echolocation and social calls are used for many research purposes from ecological studies to taxonomy. Effective use of these relies on identification of species from the recordings, but comparative recordings or detailed call descriptions to support identification are often lacking for areas with high biodiversity. The ChiroVox website (https://www.chirovox.org) was created to facilitate the sharing of bat sound recordings together with their metadata, including biodiversity data and recording circumstances. To date, more than 30 researchers have contributed over 3,900 recordings of nearly 200 species, making ChiroVox the largest open-access bat call library currently available. Each recording has a unique identifier that can be cited in publications; hence the acoustic analyses are repeatable. Most of the recordings available through the website are from bats whose species identities are confirmed, so they can be used to determine species in recordings where the bats were not captured or could not be identified. We hope that with the help of the bat researcher community, the website will grow rapidly and will serve as a solid source for bat acoustic research and monitoring.

Bat point counts: A novel sampling method shines light on flying bat communities

Emerging technologies based on the detection of electro-magnetic energy offer promising opportunities for sampling biodiversity. We exploit their potential by showing here how they can be used in bat point counts-a novel method to sample flying bats-to overcome shortcomings of traditional sampling methods, and to maximize sampling coverage and taxonomic resolution of this elusive taxon with minimal sampling bias. We conducted bat point counts with a sampling rig combining a thermal scope to detect bats, an ultrasound recorder to obtain echolocation calls, and a near-infrared camera to capture bat morphology. We identified bats with a dedicated identification key combining acoustic and morphological features, and compared bat point counts with the standard bat sampling methods of mist-netting and automated ultrasound recording in three oil palm plantation sites in Indonesia, over nine survey nights. Based on rarefaction and extrapolation sampling curves, bat point counts were similarly effective but more time-efficient than the established methods for sampling the oil palm species pool in our study. Point counts sampled species that tend to avoid nets and those that are not echolocating, and thus cannot be detected acoustically. We identified some bat sonotypes with near-infrared imagery, and bat point counts revealed strong sampling biases in previous studies using capture-based methods, suggesting similar biases in other regions might exist. Our method should be tested in a wider range of habitats and regions to assess its performance. However, while capture-based methods allow to identify bats with absolute and internal morphometry, and unattended ultrasound recorders can effectively sample echolocating bats, bat point counts are a promising, non-invasive, and potentially competitive new tool for sampling all flying bats without bias and observing their behavior in the wild.

Intact forests of the Hkakabo Razi Landscape are a hotspot of bat diversity in South-east Asia

The Hkakabo Razi Landscape, in northern Kachin, Myanmar, is one of the largest remaining tracts of intact forest in South-east Asia. In 2016, we undertook a survey in its southern margins to assess bat diversity, distribution and ecology and evaluate the importance of the area for global bat conservation. Two collecting trips had taken place in the area in 1931 and 1933, with four bat species reported. We recorded 35 species, 18 of which are new for Kachin. One species, Murina hkakaboraziensis, was new to science and three, Megaerops niphanae, Phoniscus jagorii, Murina pluvialis, were new records for Myanmar. Our findings indicate high bat diversity in Hkakabo Razi; although it comprises only 1.7% of Myanmar's land area, it is home to 33.6% of its known bat species. This emphasizes Hkakabo Razi's importance for conserving increasingly threatened, forest-interior bats, especially in the families Kerivoulinae and Murininae. There is also a high diversity of other mammals and birds within the Hkakabo Razi Landscape, which supports its nomination as a World Heritage Site.

Trade-offs between multifunctionality and profit in tropical smallholder landscapes

Land-use transitions can enhance the livelihoods of smallholder farmers but potential economic-ecological trade-offs remain poorly understood. Here, we present an interdisciplinary study of the environmental, social and economic consequences of land-use transitions in a tropical smallholder landscape on Sumatra, Indonesia. We find widespread biodiversity-profit trade-offs resulting from land-use transitions from forest and agroforestry systems to rubber and oil palm monocultures, for 26,894 aboveground and belowground species and whole-ecosystem multidiversity. Despite variation between ecosystem functions, profit gains come at the expense of ecosystem multifunctionality, indicating far-reaching ecosystem deterioration. We identify landscape compositions that can mitigate trade-offs under optimal land-use allocation but also show that intensive monocultures always lead to higher profits. These findings suggest that, to reduce losses in biodiversity and ecosystem functioning, changes in economic incentive structures through well-designed policies are urgently needed.

Identifying economic and ecological trade-offs of land-use transitions is important to ensure sustainability. Here, Grass et al. find biodiversity-profit trade-offs in tropical land-use transitions in Sumatra, and show that targeted landscape planning is needed to increase land-use efficiency while ensuring socio-ecological sustainability.

Bat Ensembles Differ in Response to Use Zones in a Tropical Biosphere Reserve

Biosphere reserves, designated under The United Nations Education, Scientific and Cultural Organization’s (UNESCO) Man and Biosphere Programme, aim to sustainably integrate protected areas into the biological and economic landscape around them by buffering strictly protected habitats with zones of limited use. However, the effectiveness of biosphere reserves and the contribution of the different zones of use to protection is poorly known. We assessed the diversity and activity of bats in the Crocker Range Biosphere Reserve (CRBR) in Sabah, Malaysia, using harp traps, mist nets and acoustic surveys in each zone—core, buffer, transition and in agricultural plots outside of the reserve. We captured 30 species, bringing the known bat fauna of CRBR to 50 species, half of Borneo’s bat species. Species composition and acoustic activity varied among zones and by foraging ensemble, with the core and buffer showing particular importance for conserving forest-dependent insectivorous bats. Frugivorous bats were found in all zones but were the most abundant and most species-rich ensemble within agricultural sites. Although sampling was limited, bat diversity and activity was low in the transition zone compared to other zones, indicating potential for management practices that increase food availability and enhance biodiversity value. We conclude that, collectively, the zones of the CRBR effectively protect diversity, but the value of the transition zone can be improved.

A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library

Several published checklists of bat species have covered Peninsular Malaysia as part of a broader region and/or in combination with other mammal groups. Other researchers have produced comprehensive checklists for specific localities within the peninsula. To our knowledge, a comprehensive checklist of bats specifically for the entire geopolitical region of Peninsular Malaysia has never been published, yet knowing which species are present in Peninsular Malaysia and their distributions across the region are crucial in developing suitable conservation plans. Our literature search revealed that 110 bat species have been documented in Peninsular Malaysia; 105 species have precise locality records while five species lack recent and/or precise locality records. We retrieved 18 species from records dated before the year 2000 and seven species have only ever been recorded once. Our search of Barcode of Life Datasystems (BOLD) found that 86 (of the 110) species have public records of which 48 species have public DNA barcodes available from bats sampled in Peninsular Malaysia. Based on Neighbour-Joining tree analyses and the allocation of DNA barcodes to Barcode Index Number system (BINs) by BOLD, several DNA barcodes recorded under the same species name are likely to represent distinct taxa. We discuss these cases in detail and highlight the importance of further surveys to determine the occurences and resolve the taxonomy of particular bat species in Peninsular Malaysia, with implications for conservation priorities.

Bats (Chiroptera) recorded in the lowland of Southeast Sulawesi, Indonesia with notes on taxonomic status and significant range extensions

This paper reports on a bat survey conducted in November 2011 in Mangolo Nature Park and Rawa Aopa Watumohai National Park, both lowland forests located in Southeast Sulawesi. We recorded 22 species of bats that represents nearly 1/3 of the total bat species known to occur on Sulawesi. Three of these are endemic to Sulawesi and adjacent islands, whereas one species,