Growth hormone receptor/binding protein: physiology and function

A representation transfer learning approach for enhanced prediction of growth hormone binding proteins

Growth hormone binding proteins (GHBPs) are soluble proteins that play an important role in the modulation of signaling pathways pertaining to growth hormones. GHBPs are selective and bind non-covalently with growth hormones, but their functions are still not fully understood. Identification and characterization of GHBPs are the preliminary steps for understanding their roles in various cellular processes. As wet lab based experimental methods involve high cost and labor, computational methods can facilitate in narrowing down the search space of putative GHBPs. Performance of machine learning algorithms largely depends on the quality of features that it feeds on. Informative and non-redundant features generally result in enhanced performance and for this purpose feature selection algorithms are commonly used. In the present work, a novel representation transfer learning approach is presented for prediction of GHBPs. For their accurate prediction, deep autoencoder based features were extracted and subsequently SMO-PolyK classifier is trained. The prediction model is evaluated by both leave one out cross validation (LOOCV) and hold out independent testing set. On LOOCV, the prediction model achieved 89.8%% accuracy, with 89.4% sensitivity and 90.2% specificity and accuracy of 93.5%, sensitivity of 90.2% and specificity of 96.8% is attained on the hold out testing set. Further a comparison was made between the full set of sequence-based features, top performing sequence features extracted using feature selection algorithm, deep autoencoder based features and generalized low rank model based features on the prediction accuracy. Principal component analysis of the representative features along with t-sne visualization demonstrated the effectiveness of deep features in prediction of GHBPs. The present method is robust and accurate and may complement other wet lab based methods for identification of novel GHBPs.

Transcriptome analysis of the mammary gland from GH transgenic goats during involution

Mammary glands are organs for milk production in female mammals. Growth hormone (GH) is known to affect the growth and development of the mammary gland, as well as to increase milk production in dairy goats. This study performed a comprehensive expression profiling of genes expressed in the mammary gland of early involution GH transgenic (n=4) and non-transgenic goats (n=4) by RNA sequencing. RNA was extracted from mammary gland tissues collected at day 3 of involution. Gene expression analysis was conducted by Illumina RNA sequencing and sequence reads were assembled and analyzed using TopHat. FPKM (fragments per kilobase of exon per million) values were analyzed for differentially expressed genes using the Cufflinks package. Gene ontology analysis of differentially expressed genes was categorized using agriGO, while KEGG pathway analysis was performed with the online KEGG automatic annotation server. Our results revealed that 75% of NCBI goat annotated genes were expressed during early involution. A total of 18,323 genes were expressed during early involution in GH transgenic goats, compared with 18,196 expressed genes during early involution of non-transgenic goats. In these expressed genes, the majority (17,589) were ubiquitously expressed in GH transgenic and non-transgenic goats. However, there were 745 differentially expressed genes, 421 of which were upregulated and 324 were downregulated in GH transgenic goats. GO and KEGG pathway analysis showed that these genes were involved in mammary gland physiology, including cell adhesion molecules, ECM-receptor interaction, Jak-STAT signaling pathway, and fat metabolism. Our results demonstrated that the GH receptor was strongly affected in GH transgenic goats, which may activate the IGF-1/Stat3 signaling pathway. Overall, our study provided a global view of the transcriptome during involution of GH transgenic and non-transgenic goats, which increases our understanding of the biology of involution in the goat.

Molecular cloning, characterization and distribution of two types of growth hormone receptor in orange-spotted grouper (Epinephelus coioides)

The cDNAs encoding two distinct growth hormone receptors (GHRs) were firstly cloned and sequenced from the liver of orange-spotted grouper (Epinephelus coioides). The cDNA of grouper GHR1 consisted of 2673-bp and encoded 658 amino acids, while the cDNA of grouper GHR2 consisted of 2989-bp and encoded 577 amino acids. The two cDNAs shared 78.6% identity in nucleotide sequence and 37.8% identity in deduced amino acid sequence. Northern blot analysis demonstrated a single GHR1 transcript of approximately 4.3 kb in liver and a single GHR2 transcript of approximately 3.9 kb in the liver and muscle. In the Real-time PCR assay, grouper GHR1 and GHR2 were expressed in all tissues tested. The expression of GHR2 was significantly higher than that of GHR1 in telencephalon, cerebellum, pituitary, heart and white muscle, whereas the expression of GHR1 was significantly higher in liver. These results indicated that there were two types of GHRs existing in orange-spotted grouper, and they had different structural features and tissues expression patterns. However, the functional differences between GHR1 and GHR2 in orange-spotted grouper remained further research.

Generation of chicken growth hormone-binding proteins by proteolysis

A soluble protein that specifically bound growth hormone (GH) was characterized in culture medium of a COS-7 cell line transfected with the cDNA of the full-length chicken GH receptor (cGHR). Incubation of culture medium with 125I-labeled human GH resulted in the formation of a single specific complex with high affinity (KD = 0.36 nM) and apparent molecular weight of 75 kDa. The production of large quantities of GH-binding protein (GHBP) amounting to, per hour, 23% of the cell's GHR, points to the importance of partial proteolysis for GHR turnover. Considerable amounts of GHBP were also detected in a cytosolic fraction. These results strongly suggest that in chicken, as in rabbit and monkey, the GHBP is generated, at least partially, by proteolytic cleavage of the membrane-anchored GHR.