Population Genomics of the Neotropical Brown Stink Bug, Euschistus heros: The Most Important Emerging Insect Pest to Soybean in Brazil

A framework for performance enhancement of classifiers in detection of prostate cancer from microarray gene

Prostate cancer is a major world health problem for men. This shows how important early detection and accurate diagnosis are for better treatment and patient outcomes. This study compares different ways to find Prostate Cancer (PCa) and label tumors as normal or abnormal, with the goal of speeding up current work in microarray gene data analysis. The study looks at how well several feature extraction methods work with three feature selection strategies: Harmonic Search (HS), Firefly Algorithm (FA), and Elephant Herding Optimization (EHO). The techniques tested are Expectation Maximization (EM), Nonlinear Regression (NLR), K-means, Principal Component Analysis (PCA), and Discrete Cosine Transform (DCT). Eight classifiers are used for the task of classification. These are Random Forest, Decision Tree, Adaboost, XGBoost, and Support Vector Machine (SVM) with linear, polynomial, and radial basis function kernels. This study looks at how well these classifiers work with and without feature selection methods. It finds that the SVM with radial basis function kernel, using DCT for feature extraction and EHO for feature selection, does the best of all of them, with an accuracy of 94.8 % and an error rate of 5.15 %.

The genome sequence of the Neotropical brown stink bug, Euschistus heros provides insights into population structure, demographic history and signatures of adaptation

The Neotropical brown stink bug, Euschistus heros, is a major pest of soybean in South America. The importance of E. heros as a pest has grown significantly in recent times due to increases in its abundance and range, and the evolution of insecticide resistance. Recent work has begun to examine the genetic diversity, population structure, and genetic mechanisms of insecticide resistance in E. heros. However, to date, investigation of these topics has been hampered by a lack of genomic resources for this species. Here we address this need by assembling a high-quality draft genome for E. heros. We used a combination of short and long read sequencing to assemble an E. heros genome of 1.4 Gb comprising 906 contigs with a contig N50 of 3.5 MB. We leveraged this new genomic resource, in combination with genotyping by sequencing, to explore genetic diversity in populations of this species in Brazil and identify genetic loci in the genome which are under selection. Our genome-wide analyses, confirm that there are two populations of E. heros co-occurring in different geographical regions in Brazil, and that, in certain regions of the country these populations are hybridizing. We identify several regions of the genome as under selection, including markers associated with putative insecticide resistance genes. Taken together, the new genomic resources generated in this study will accelerate research into fundamental aspects of stinkbug biology and applied aspects relating to the sustainable control of a highly damaging crop pest.

Revisiting Stål's thoughts: formalizing the ictericus group in Euschistus (Euschistus) (Hemiptera: Heteroptera: Pentatomidae)

Euschistus Dallas is distributed throughout the Western Hemisphere and is composed of 67 species in three subgenera: Euschistomorphus Jensen-Haarup, Lycipta Stål, and the nominate subgenus. Euschistus (Euschistus) includes several economically important species. Due to the lack of a phylogenetic analysis for the subgenus Euschistus, its groupings are based primarily on male genitalia. In this paper, the following Nearctic taxa that were first grouped together by Stål (1872), namely E. ictericus (Linnaeus), E. variolarius (Palisot de Beauvois), E. servus servus (Say), E. servus euschistoides (Vollenhoven), and E. tristigmus tristigmus (Say), are reviewed and redescribed. Several other similar, and probably related, taxa are also included in this study: E. tristigmus luridus (Dallas), E. inflatus Van Duzee, and E. latimarginatus Zimmer. Morphological patterns pertaining to the internal and external male and female genitalia allowed us to formalize the ictericus group to include the above-mentioned species (except E. tristigmus). The morphological overlap between the subspecies and sympatric areas of distribution have led us to consider E. servus euschistoides as a junior synonym of E. servus servus, and to corroborate the synonymy first proposed by Uhler (1861) of E. tristigmus luridus under E. tristigmus tristigmus.  

Intra- and Interspecific Variation in the Susceptibility to Insecticides of Stink Bugs (Hemiptera: Pentatomidae) That Attack Soybean and Maize in Southern Brazil

This study evaluated intra- and interspecific variation regarding the susceptibility to insecticides of key pentatomid pests of soybean (Glycine max L.) and maize (Zea mays L.) crops in Brazil. To perform bioassays, populations of Euschistus heros (F.), Diceraeus (=Dichelops) furcatus (F.), Nezara viridula (L.), and Piezodorus guildinii (Westwood) (Hemiptera: Pentatomidae) were collected in soybean fields in Southern Brazil during the 2020/2021 crop season. Then, stink bugs were exposed to doses of commercial insecticides commonly applied for its control in dip-test bioassays using fresh green bean pods. In general, all stink bug species and populations studied were susceptible to acephate, acetamiprid + bifenthrin, imidacloprid + bifenthrin, and ethiprole, with mortality rates > 80%. Most populations of E. heros and D. furcatus, considered the main stink bugs that attack soybean and maize, respectively, presented low or intermediate susceptibility to acetamiprid + α-cypermethrin, ζ-cypermethrin + bifenthrin, dinotefuran + λ-cyhalothrin, and bifenthrin + carbosulfan. Except for bifenthrin + carbosulfan (mortality < 57%), secondary stink bugs species that attack soybean (N. viridula and P. guildinii) showed pronounced susceptibility to all insecticides tested, with mortality rates > 70%. In summary, the populations of E. heros and D. furcatus showed diminished susceptibility to various insecticides formulated with the mixture of neonicotinoids + pyrethroids, whereas N. viridula and P. guildinii were most susceptible to the insecticides evaluated. The implications of these findings to integrated and resistance management programs are discussed.

Reproductive Patterns Drive the Gene Flow and Spatial Dispersal of Euschistus heros (Hemiptera: Pentatomidae)

Euschistus heros (Hemiptera: Pentatomidae) has two allopatric strains with a hybrid zone in central Brazil. Asymmetric dispersal and gene flow between these strains of E. heros have been observed, where the South strain (SS) moves more quickly to the northern regions of the country than the North strain (NS) to the southern areas. In addition, SS generally has a bigger body size and presents dark brown coloration, and NS is usually smaller in size and presents light brown coloration. Here, we studied the reproductive behavior and tested for the presence of assortative mating and reproductive barriers between the two allopatric strains of E. heros. Nonrandom mating was observed in the SS strain based on mating choice trials and the reproductive isolation indexes. SS females and males prefer to mate with their co-specific (same strain) partner, while NS insects showed no mating preference. The insect's pronotum width was positively associated with the mating choice suggesting size-assortative mating in E. heros. Reciprocal crosses between strains yielded similar reproductive outputs when compared with pure strain crosses, suggesting similar fitness of hybrid pure strains. The asymmetric gene flow in the hybridization zone that favors SS seems to be associated with the reproductive behavior of the species, which favors the typical phenotype found in the SS populations.

Evidence of altitudinal gradient modifying genomic and chemical diversity in populations of Lychnophora pinaster Mart

Lychnophora pinaster Mart. (Asteraceae) is endemic to the Brazilian Cerrado. It is distributed along the altitudinal gradient of the mountainous ranges of the state of Minas Gerais. This study aimed to evaluate the influence of altitude on the genetic diversity of L. pinaster populations and the effects of altitude and climatic factors on essential oil chemical composition. Essential oils from L. pinaster populations from the north (North 01, North 02, and North 03, 700-859 m) and the Metropolitan region of Belo Horizonte (MhBH 01 and MrBH 02, 1366-1498 m) were analyzed. SNP markers from L. pinaster in these regions and Campos das Vertentes (CV 01, CV 02, and CV 03, 1055-1292 m) were also analyzed. The main compounds in essential oils were 14-hydroxy-α-humulene (North 01 and North 03), cedr-8(15)-en-9-α-ol (North 02), 14-acetoxy-α-humulene (MrBH 01), and 4-oxo-15-nor-eudesman-11-ene (MrBH 02). Hierarchical cluster and heatmap analyses showed that the North and MrBH populations included five different groups, indicating the chemical composition of essential oils is distinct in each population. Furthermore, principal component analysis showed that higher altitudes (1366 m and 1498 m) in the MrBH influence the chemical composition of essential oils, and climatic factors determine the chemical composition in North region. The genetic diversity showed that most alleles are in Hardy-Weinberg equilibrium and imply high genetic variation and genetic polymorphisms between populations. Furthermore, the results of Mantel tests (R = 0.3861517; p = 0.04709529; R = 0.9423121; p = 0.02739726) also showed that higher altitude (>1360 m) shapes the genetic diversity at the MrBH. The genetic structure showed that higher altitudes (>1360 m) contribute to the structure of the MrBH populations, but not to North and CV populations. Therefore, the altitudinal ranges of Minas Gerais mountainous ranges determine the higher genetic and chemical diversity of L. pinaster populations.

Characterization and Comparison of Intestinal Bacterial Microbiomes of Euschistus heros and Piezodorus guildinii Collected in Brazil and the United States

Background: Herbivorous insects are one of the main biological threats to crops. One such group of insects, stink bugs, do not eat large amounts of tissue when feeding on soybean, but are damaging to the quality of the seed yield as they feed on green developing seeds leading to poorly marketable harvests. In addition to causing physical damage during sucking-feeding activities, the insects can also transmit microbial pathogens, leading to even greater yield loss. Conducting surveys of the insect intestinal microbiome can help identify possible pathogens, as well as detail what healthy stink bug digestive systems have in common. Methods: We used the conserved V4 region of the 16S rRNA gene to characterize the bacterial microbiome of the red-banded stink bug Piezodorus guildinii collected in Brazil and the United States, as well as the neotropical brown stink bug Euschistus heros collected in Brazil. Results: After quality filtering of the data, 192 samples were kept for analyses: 117 samples from P. guildinii covering three sites in Brazil and four sites in the United States, and 75 samples for E. heros covering 10 sites in Brazil. The most interesting observations were that the diversity and abundance of some bacterial families were different in the different ecoregions of Brazil and the United States. Conclusion: Some families, such as Acetobacteraceae, Bacillaceae, Moraxellaceae, Enterobacteriaceae, and Rhodocyclaceae, may be related to the better adaptation in some localities in providing nutrients, break down cellulose, detoxify phytochemicals, and degrade organic compounds, which makes it difficult to control these species.