Long-Term Artificial Selection for Increased Larval Body Weight of Hermetia illucens in Industrial Settings

Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation

Selective breeding in insects has predominantly relied on phenotypic selection without considering relatedness. Selection on estimated breeding values could potentially increase genetic gain, but the challenge of pedigree tracking complicates this. Family selection can be used as an alternative to individual selection, either using combined between- and within-family selection, or strict between-family selection with full-sib group records as a proxy for individual data. The effectiveness of family selection can however be compromised by the presence of unmitigated common environmental effects. In this study, we employ stochastic simulations to explore expected genetic gain and rate of inbreeding in insect populations under four single-trait selection schemes: phenotypic selection, individual pedigree selection, combined selection using both family and individual breeding values for selection, and between-family selection using full-sib average phenotypes for breeding value estimation. These schemes are compared on genetic gain and rate of inbreeding across five trait heritabilities (0.05, 0.1, 0.2, 0.4 and 0.6), two variations in number of families in the population (60 or 200), and two offspring group structures for the family breeding schemes (1 or 3 sib groups per female) with a fixed common environment effect. Selection based on individual breeding values results in significantly higher genetic gain than phenotypic selection at low heritability (≤ 0.1), and similar gain at heritability > 0.1. Phenotypic selection results in a lower rate of inbreeding (0.003-0.011) compared to other schemes (0.005-0.055) at low heritability (≤ 0.1), but this difference is reduced as heritability increases. Combined selection results in genetic gain between that of the phenotypic and individual pedigree schemes, depending on sib group structure and heritability. Using between-family selection reduces genetic gain (0.23-1.97) compared to other schemes (0.40-4.34). Establishing multiple sib-groups mitigates the confounding of genetic and common environment effects, and thus the reduction in genetic gain from family selection schemes. Increasing the number of families from 60 to 200 in the breeding population reduces inbreeding in all scenarios (ΔF at 60 families is 0.009-0.055, at 200 families is 0.003-0.031). We conclude that selection on individual breeding values yields greater genetic gain compared to family breeding values and selection on phenotypes. The between-family approach is an alternative when individual pedigrees are not feasible to maintain. Phenotypic selection results in both high genetic gain and generally low rates of inbreeding, but as heritability increases, so does the rate of inbreeding. Therefore, phenotypic selection should not be implemented without any inbreeding control in long-term selection.

Review: A journey into the black soldier fly digestive system: From current knowledge to applied perspectives

Recent literature on the black soldier fly (BSF) confirms the deep interest in this species for the bioconversion of organic waste, including challenging substrates that contain recalcitrant macromolecules, and highlights the growing trend in new applications for this insect. While protein meal remains the most prominent use of BSF larvae, emerging research is increasingly exploring alternative applications of biomolecules derived from these larvae, including proteins, lipids, chitin, and antimicrobial peptides. Moreover, the high feeding versatility of this insect is being recognised in fields beyond animal feed, such as bioremediation, where its potential ability to degrade contaminants can present significant ecological benefits. Although there is now widespread agreement that a thorough understanding of BSF biology is essential to enlarge the range of applications in which this insect may offer new sustainable solutions, studies on the digestive system are still limited and we are far from having a whole comprehension of the functional features of this complex structure. In fact, the gut is not only the core of the bioconversion process but also represents the first defence barrier against ingested pathogens, and due to the presence of a highly versatile gut microbiota, it may be a potential source of novel microbes and enzymes that could find application in various biotechnological sectors. This review aims to provide a comprehensive overview of the current knowledge on the BSF midgut -the central region of the gut responsible for nutrient digestion and absorption- in both larvae and adults, together with information about mouthparts and the organisation of the alimentary canal. Moreover, starting from the most recent studies on the midgut and its microbiota, we discuss implications for improving larval production, exploiting challenging substrates, and mitigating pollutants in contaminated biomasses.

What Veterinarians Need to Know About the Newly-Emerging Field of Insects-as-Food-and-Feed

Over the last two decades, the insects-as-food-and-feed industry has rapidly emerged. Its growth is largely because insects require substantially less resources (water, food, and energy) to produce than traditional sources of animal protein, making it a sustainable alternative food option. As this industry continues to grow, veterinarians will likely be called upon to assist in identifying food safety concerns, assessing animal health, implementing biosecurity measures, and formulating/prescribing treatment protocols comparable to what we have seen with the honeybee industry and the institution of veterinary feed directives (VFDs). Similar to other agricultural markets, high animal densities and management practices put insects at high risk for infectious diseases. Veterinarians interested in working with these species will need to become knowledgeable regarding the diseases afflicting the feeder insect industry and how best to diagnose and treat pathogens of concern. Using the edible cricket industry as an example, this review will highlight health and production issues while drawing similarities to other traditional livestock operations. If the insects-as-feed-and-food industry is going to be viable, veterinary involvement will be essential to ensure that insects can be used as a safe source of food for all.

Drivers of genomic diversity and phenotypic development in early phases of domestication in Hermetia illucens

The black soldier fly (BSF), Hermetia illucens, has the ability to efficiently bioremediate organic waste into usable bio-compounds. Understanding the impact of domestication and mass rearing on fitness and production traits is therefore important for sustainable production. This study aimed to assess patterns of genomic diversity and its association to phenotypic development across early generations of mass rearing under two selection strategies: selection for greater larval mass (SEL lines) and no direct artificial selection (NS lines). Genome-wide single nucleotide polymorphism (SNP) data were generated using 2bRAD sequencing, while phenotypic traits relating to production and population fitness were measured. Declining patterns of genomic diversity were observed across three generations of captive breeding, with the lowest diversity recorded for the F3 generation of both selection lines, most likely due to founder effects. The SEL cohort displayed statistically significantly greater larval weight com the NS lines with pronounced genetic and phenotypic directional changes across generations. Furthermore, lower genetic and phenotypic diversity, particularly for fitness traits, were evident for SEL lines, illustrating the trade-off between selecting for mass and the resulting decline in population fitness. SNP-based heritability was significant for growth, but was low or non-significant for fitness traits. Genotype-phenotype correlations were observed for traits, but individual locus effect sizes where small and very few of these loci demonstrated a signature for selection. Pronounced genetic drift, due to small effective population sizes, is likely overshadowing the impacts of selection on genomic diversity and consequently phenotypic development. The results hold particular relevance for genetic management and selective breeding for BSF in future.

The effect of phenotyping, adult selection, and mating strategies on genetic gain and rate of inbreeding in black soldier fly breeding programs

BACKGROUND

The aim of this study was to compare genetic gain and rate of inbreeding for different mass selection breeding programs with the aim of increasing larval body weight (LBW) in black soldier flies. The breeding programs differed in: (1) sampling of individuals for phenotyping (either random over the whole population or a fixed number per full sib family), (2) selection of adult flies for breeding (based on an adult individual's phenotype for LBW or random from larvae preselected based on LBW), and (3) mating strategy (mating in a group with unequal male contributions or controlled between two females and one male). In addition, the numbers of phenotyped and preselected larvae were varied. The sex of an individual was unknown during preselection and females had higher LBW, resulting in more females being preselected.

RESULTS

Selecting adult flies based on their phenotype for LBW increased genetic gain by 0.06 genetic standard deviation units compared to randomly selecting from the preselected larvae. Fixing the number of phenotyped larvae per family increased the rate of inbreeding by 0.15 to 0.20% per generation. Controlled mating compared to group mating decreased the rate of inbreeding by 0.02 to 0.03% per generation. Phenotyping more than 4000 larvae resulted in a lack of preselected males due to the sexual dimorphism. Preselecting both too few and too many larvae could negatively impact genetic gain, depending on the breeding program.

CONCLUSIONS

A mass selection breeding programs in which the adult fly is selected based on their larval phenotype, breeding animals mate in a group and sampling larvae for phenotyping at random over the whole population is recommended for black soldier flies, considering the positive effect on rates of genetic gain and inbreeding. The number of phenotyped and preselected larvae should be calculated based on the expected female weight deviation to ensure sufficient male and female candidates are selected.

Whole-genome sequencing of two captive black soldier fly populations: Implications for commercial production

Black soldier fly (BSF; Hermetia illucens) is a promising insect species for food and feed production as its larvae can convert different organic waste to high-value protein. Selective breeding is one way to optimize production, but the potential of breeding is only starting to be explored and not yet utilized for BSF. To assist in monitoring a captive population and implementing a breeding program, genomics tools are imperative. We conducted whole genome sequencing of two captive populations separated by geographical distance - Denmark (DK) and Texas, USA (TX). Various population genetics analyses revealed a moderate genetic differentiation between two populations. Moreover, we observed higher inbreeding in the DK population, and the detection of a subpopulation within DK population aligned well with the recent foundation of the DK population from two captive populations. Additionally, we generated gene ontology annotation and variants annotation for wider potential applications. Our findings establish a robust marker set for research in population genetics, facilitating the monitoring of inbreeding and laying the groundwork for practical breeding programs for BSF.

Framework for valorizing waste- and by-products through insects and their microbiomes for food and feed

One third of the food produced for human consumption is currently lost or wasted. Insects have a high potential for converting organic waste- and by-products into food and feed for a growing human population due to symbiosis with microorganisms. These symbioses provide an untapped reservoir of functional microbiomes that can be used to improve industrial insect production but are poorly studied in most insect species. Here we review the most current understanding and challenges of valorizing organic waste- and by-products through insects and their microbiomes for food and feed, and emerging novel food technologies that can be used to investigate and manipulate host(insects)-microbiome interactions. We further construct a holistic framework, by integration of novel food technologies including holo-omics, genome editing, breeding, phage therapy, and administration of prebiotics and probiotics to investigate and manipulate host(insects)-microbiome interactions, and solutions for achieving stakeholder acceptance of novel food technologies for a sustainable food production.

A cell line derived from the black soldier fly, Hermetia illucens (Diptera: Stratiomyidae)

Insect cell lines are effective tools used in industry and academia. For example, they are used in screening potential insecticides, in making certain proteins for biomedical applications, and in basic research into insect biology. So far, there are no cell lines derived from the black soldier fly, Hermetia illucens (BSF). This may become an issue because BSFs are employed in a range of industrial and household processes. BSFs are used in producing biodiesel, in developing cosmetics and skin creams, and in the production of some medicines and animal feeds. BSF larvae process waste streams from a variety of sources into food for some animals and are also used in household composting. Our BSF cell line, designated BCIRL-HiE0122021-SGS, was developed from eggs using the medium CLG#2 (50% L-15 + 50% EX-CELL 420, with 9% FBS and antibiotics), with many other media being tested. This cell line consists of attached cells with a variety of morphologies and its identity was authenticated using CO1 barcoding. A growth curve was generated and the resulting doubling time was 118 h. We quantified the fatty acid methyl esters (FAMES) and recorded the expected range of saturated, monounsaturated, and polyunsaturated FAMEs, with only trace levels of lauric acid being noted. The BSF cell line is available free of charge by request.

Estimation of genetic parameters for the implementation of selective breeding in commercial insect production

BACKGROUND

There is a burgeoning interest in using insects as a sustainable source of food and feed, particularly by capitalising on various waste materials and by-products that are typically considered of low value. Enhancing the commercial production of insects can be achieved through two main approaches: optimising environmental conditions and implementing selective breeding strategies. In order to successfully target desirable traits through selective breeding, having a thorough understanding of the genetic parameters pertaining to those traits is essential. In this study, a full-sib half-sib mating design was used to estimate variance components and heritabilities for larval size and survival at day seven of development, development time and survival from egg to adult, and to estimate correlations between these traits, within an outbred population of house flies (Musca domestica), using high-throughput phenotyping for data collection.

RESULTS

The results revealed low to intermediate heritabilities and positive genetic correlations between all traits except development time and survival to day seven of development and from egg to adulthood. Surprisingly, larval size at day seven exhibited a comparatively low heritability (0.10) in contrast to development time (0.25), a trait that is believed to have a stronger association with overall fitness. A decline in family numbers resulting from low mating success and high overall mortality reduced the amount of available data which resulted in large standard errors for the estimated parameters. Environmental factors made a substantial contribution to the phenotypic variation, which was overall high for all traits.

CONCLUSIONS

There is potential for genetic improvement in all studied traits and estimates of genetic correlations indicate a partly shared genetic architecture among the traits. All estimates have large standard errors. Implementing high-throughput phenotyping is imperative for the estimation of genetic parameters in fast developing insects, and facilitates age synchronisation, which is vital in a breeding population. In spite of endeavours to minimise non-genetic sources of variation, all traits demonstrated substantial influences from environmental components. This emphasises the necessity of thorough attention to the experimental design before breeding is initiated in insect populations.

Laboratory-adapted and wild-type black soldier flies express differential plasticity in bioconversion and nutrition when reared on urban food waste streams

BACKGROUND

The black soldier fly (BSF) offers a potential solution to address shortages of feed and food sources; however, selecting effective rearing substrates remains a major hurdle in BSF farming. In an urban area like Singapore, current practice is based on rearing BSF on homogeneous waste streams (e.g., spent brewery grains or okara) because heterogeneous food wastes (e.g., mixed kitchen/canteen waste or surplus cooked food) present several operational challenges with respect to the standardization of development, nutritional content, and harvesting.

RESULTS

In this study, we compared two genetic strains of BSF larvae (wild-type and laboratory-adapted line) in a bioconversion experiment with diverse types of food waste (homogeneous/heterogeneous; plant/meat) and we quantified the phenotypic plasticity. Our results demonstrate different plasticity in bioconversion performance, larval growth and larval nutrition between the two BSF lines. This difference may be attributed to the selective breeding the laboratory-adapted line has experienced. Notably, larval lipid content displayed little to no genetic variation for plasticity compared with larval protein and carbohydrate content. Despite variation in larval development, heterogeneous food wastes can produce better performance in bioconversion, larval growth, and larval nutrient content than homogeneous food waste. All-meat diets result in high larvae mortality but larval survival could be rescued by mixing meat with plant-based food wastes.

CONCLUSION

Overall, we suggest using mixed meals for BSF larvae feeding. Targeted breeding may be a promising strategy for the BSF industry but it is important to consider the selection effects on plasticity in larval nutrition carefully. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

Rapid Evolutionary Adaptation to Diet Composition in the Black Soldier Fly (Hermetia illucens)

Genetic adaptation of Hermetia illucens (BSF) to suboptimal single sourced waste streams can open new perspectives for insect production. Here, four BSF lines were maintained on a single sourced, low-quality wheat bran diet (WB) or on a high-quality chicken feed diet (CF) for 13 generations. We continuously evaluated presumed evolutionary responses in several performance traits to rearing on the two diets. Subsequently, we tested responses to interchanged diets, i.e., of larvae that had been reared on low-quality feed and tested on high-quality feed and vice versa to evaluate costs associated with adaptation to different diets. BSF were found to experience rapid adaptation to the diet composition. While performances on the WB diet were always inferior to the CF diet, the adaptive responses were stronger to the former diet. This stronger response was likely due to stronger selection pressure experienced by BSF fed on the low-quality single sourced diet. The interchanged diet experiment found no costs associated with diet adaptation, but revealed cross generational gain associated with the parental CF diet treatment. Our results revealed that BSF can rapidly respond adaptively to diet, although the mechanisms are yet to be determined. This has potential to be utilized in commercial insect breeding to produce lines tailored to specific diets.

Inheritance of Two Traits With High Plasticity, Developmental Speed, and Body Size, in Tenebrio molitor (Coleoptera: Tenebrionidae)

The study of inheritance of quantitative traits of high plasticity in insects has been limited. The heritability of larval development time and body weight in Tenebrio molitor L. was determined using the method of parent-offspring regression. The parental group of adults obtained from a cohort from one day of oviposition from a stock colony was divided into 28 class groups according to their larval development time and pupal weight. The progeny resulting from these parental classes was grouped in experimental units and allowed to develop to the pupal stage. Means of larval development time and pupal weight of the progeny were compared with their parental class levels using linear regression. The selection of larval development time and pupal weight in the parental classes had a significant impact on the means of larval development time and pupal weight of the progeny. The regression coefficients for larval development time and pupal weight were 0.626 ± 0.02 and 0.408 ± 0.02, respectively. These values represent the proportion of genetic determination of these two traits based on the principles of the method of parent-offspring regression. The apparent independence of larval development time and pupal weight based on their poor linear correlation is discussed.