Dynamics of Inorganic Nutrients in Intertidal Sediments: Porewater, Exchangeable, and Intracellular Pools

Drivers for primary producers' dynamics: New insights on annual benthos pelagos monitoring in anthropised freshwater marshes (Charente-Maritime, France)

Wetlands, especially marshes, support many services such as carbon catchment control or water purification led by primary producers such as phytoplankton and microphytobenthos (PB). The impact of the sedimentary compartment, as source and sink of essential nutrients for the water column, is often neglected in the study of their dynamics and water purification capacity of the systems. This work compared monthly (between February 2020 and April 2021) the benthic and pelagic primary producers' dynamics in two anthropised freshwater marshes (Marans and Genouillé), with the simultaneous follow-up of physico-chemical parameters of the water column and nutrient fluxes at the sediment-water (SWI) interface. It was suggested a strong contribution of phytoplankton (pumping) and the benthic compartment (denitrification) to the water purification of these two nitrates (NO₃^-)-rich marshes. Total phytoplankton production fluctuated between ∼5 (winter) and 1500 mg C m^-3 d^-1 (fall) at Marans and between 40 (winter) and ∼750 mg C m^-3 d^-1 (spring) at Genouillé. At Marans, soluble reactive phosphorus (SRP) benthic effluxes (-2.10¹ to -6.10² µmol m^-2 d^-1 in fall and summer, respectively) coincided with phytoplankton bloom periods. These effluxes were inhibited by NO₃^- penetration in the sediment (0 to 5.10⁴ µmol m^-2 d^-1), by inhibiting iron respiration. At Genouillé, inhibition of SRP effluxes depended on denitrification rate and on P stocks in the sediment, where slight SRP effluxes (-10¹ µmol m^-2 d^-1) could have co-occurred with slight NO₃^- influxes (5.10² µmol m^-2 d^-1) in spring. The presence of PB (between 10-60 and 40-120 mg g_sed^-1 at Marans and Genouillé, respectively), suggested a strong contribution of the benthic compartment to the total primary production (benthic and pelagic through resuspension processes) in these environments. This work encourages to consider the benthos and the pelagos as a unicum to provide better sustainable management of such systems and limit eutrophication risks in coastal areas.

Microphytobenthos spatio-temporal dynamics across an intertidal gradient using Random Forest classification and Sentinel-2 imagery

Microphytobenthos (MPB) provides important ecosystem functions and services, contributing significantly to the total primary production in shallow coastal ecosystems. However, determining the factors that regulate the seasonal changes of MPB and its distribution patterns at larger scales is hindered by the considerable spatial and temporal variability in these environments. Here, we studied the dynamics of intertidal MPB biomass, cover, and net growth rates in a south European tidal flat (Cadiz Bay, Spain) over a four-year period using the Normalized Difference Vegetation Index (NDVI) calculated from Sentinel-2 satellite images. Pixels dominated by different benthic communities (MPB, Zostera sp., Caulerpa sp. and green macroalgae) were identified at a 10-m resolution using a Random Forest (RF) machine learning classification algorithm. MPB dominated the intertidal zone. MPB cover did not show a clear seasonal pattern and was clearly higher in the middle of the intertidal range of sea level. Despite interannual variability, MPB biomass was always higher during winter, coinciding with observations from other low latitude intertidal flats with temperate climate, and in the upper-middle intertidal. Net rates of MPB biomass change, calculated from the differences in MPB NDVI over time, showed maximal net growth rates from autumn to winter and maximum loss rates during spring and summer, although with high variability. Our study demonstrates that RF algorithms allow mapping MPB and other intertidal communities from Sentinel-2 multispectral satellite imagery accurately obtaining invaluable information from large areas at very high spatio-temporal resolution. The dissimilarities observed in the patterns of MPB variables over time or sea level, indicate differences in their ecological regulation, still largely unknown both here and in other temperate climate intertidal flats. High resolution remote sensing can aid in their detailed and systematic study producing a more integrated view of these systems and contributing to their science-based management and conservation.

Impacts of coastal aquaculture on sedimentary phosphorus speciation and fate: Evidence from a seaweed cultivation area off Nan'ao Island, South China

How aquaculture impacts the coastal phosphorus (P) cycle remains poorly understood. Here we compared different P species from two sedimentary records off Nan'ao Island, South China, with core S1 collected in a large seaweed cultivation area and core S2 in a non-mariculture area. The results showed that the concentration of total P (TP) in sediment cores varied from 143.67 to 400.92 μg/g, and organic P (OP) was the dominant P species. The TOC/OP ratios in the two sediment cores were higher than the Redfield ratio in 26 samples (52%) from core S1 and 39 samples (78%) from core S2, suggesting that terrestrial organic matter was an important carbon source to Shen'ao Bay. The lack of change in Ex-P (exchangeable or loosely sorbed P) and OP in the area around core S1 since the 2000s may be due to the large-scale seaweed cultivation.

Eutrophication control strategies for highly anthropogenic influenced coastal waters

Rapid economic development and urbanization necessitate an understanding of anthropogenic effects on coastal eutrophication. It is a significant challenge for governments to alleviate water degradation and remediate coastal ecosystems. Shenzhen Bay in China, located in a developed and populous area, was selected to analyze the decadal scale influence of anthropogenic activities on eutrophication as well as the effectiveness of governmental remediation strategies. The results showed that the contribution of nutrients from anthropogenic sources accounted for over 80% of the total loads into the bay. Beginning in 1990, increased anthropogenic activities resulted in the loss of environmental capability and resilience, exacerbated eutrophication and water quality degradation. However, the status of eutrophication has been improved since 2005, following the application of intensive management actions implemented in 2000. The practice of eutrophication control suggested that, in view of technical and engineering feasibility, coastal strategies for similar shallow bays should initially reduce phosphorus, followed by nitrogen and eco-remediation to alleviate the serious aquatic situation immediately. The recovery period of eutrophication would be at least five years after governmental actions from Shenzhen Bay's experience. Furthermore, simulated scenarios indicated that eutrophication ranking of Shenzhen Bay could reach and remains medium Moderate, following a 35% reduction in total nitrogen and a 20% reduction in total phosphorus with corresponding eco-remediation.

Diel patterns of microphytobenthic primary production in intertidal sediments: the role of photoperiod on the vertical migration circadian rhythm

Diel primary production patterns of intertidal microphytobenthos (MPB) have been attributed to short-term physiological changes in the photosynthetic apparatus or to diel changes in the photoautotrophic biomass in the sediment photic layer due to vertical migration. Diel changes in primary production and vertical migration are entrained by external factors like photoperiod and tides. However, the role of photoperiod and tides has not been experimentally separated to date. Here, we performed laboratory experiments with sediment cores kept in immersion, in the absence of tides, with photoperiod or under continuous light. Measurements of net production, made with O₂ microsensors, and of spectral reflectance at the sediment surface showed that, in intertidal sediments, the photoperiod signal was the major driver of the diel patterns of net primary production and sediment oxygen availability through the vertical migration of the MPB photoautotrophic biomass. Vertical migration was controlled by an endogenous circadian rhythm entrained by photoperiod in the absence of tides. The pattern progressively disappeared after 3 days in continuous light but was immediately reset by photoperiod. Even though a potential contribution of a subjective in situ tidal signal cannot be completely discarded, Fourier and cross spectral analysis of temporal patterns indicated that the photosynthetic circadian rhythm was mainly characterized by light/dark migratory cycles.

Modelling the functioning of a coupled microphytobenthic-EPS-bacterial system in intertidal mudflats

A mechanistic and biogeochemical model was developed to analyze the interactions between microphytobenthos (MPB), bacteria and nutrients in a tidal system. Behavioral vertical migration was hypothesized as being controlled by exogenous factors (tide and light) but also by endogenous factors (carbon and nitrogen requirements). The secretion of Extracellular Polymeric Substances (EPS) during photosynthesis (overflow metabolism) and migration of diatoms was also formulated. Similarities in MPB dynamics between observations and simulations support the assumption that carbon and nitrogen ratios are additional key processes behind the vertical migration of diatoms in the sediment. The model satisfactorily reproduced the three growth phases of the MPB development observed in a mesocosm (the lag phase, the logarithmic growth, and the plateau). Besides, nutrient availability, which could be induced by faunal bioturbation, significantly determined the extent of MPB biomass and development. The plateau phase observed in the last days of simulations appeared to be attributed to a nutrient depletion in the system, emphasizing the importance of nutrient availability. The model, although improvable especially on the formulation of the EPS excretion and bacteria development, already updated understanding of several aspects of benthic-system functioning during experimental conditions.

Water column dissolved silica concentration limits microphytobenthic primary production in intertidal sediments

Primary production of microphytobenthos (MPB) contributes significantly to the total production in shallow coastal environments. MPB is a diverse community in which diatoms are usually the main microalgal group. Diatoms require N, P, and other nutrients as with other autotrophs, but in addition require silicate to create their outer cell wall. Therefore, dissolved silica (DSi) might be a potential limiting factor for benthic primary production in areas with reduced freshwater input. To test this hypothesis, a microcosm experiment was conducted using intact sediment cores collected from an intertidal mudflat in the Bay of Cádiz and supplied with increasing concentrations of DSi (0, 5, 10, 25, and 45 μmol · L^-1 ). After 7 d of enrichment, we determined chlorophyll a and c (Chl a, c) contents, metabolic rates (Net [P_n ] and Areal Gross [P_g^A ] Production and Light [R_L ] and Dark [R_D ] Respiration), as well as fluxes of inorganic nutrients across the sediment-water interface. Chl a and c contents increased significantly with respect to the initial conditions but no differences between treatments were found. Both P_n and P_g^A showed a saturating-like pattern with silicate concentration, reaching maximum rates at a DSi concentration of 45 μmol · L^-1 . The addition of DSi also resulted in an increase of DSi and ammonium uptake by the sediment, which was significantly higher in light than in darkness. Our results clearly show that water column DSi concentrations have a direct impact on benthic primary production, also controlling other related processes such as inorganic nutrient fluxes.

Intracellular nitrate in sediments of an oxygen-deficient marine basin is linked to pelagic diatoms

Intracellular nitrate is an important electron acceptor in oxygen-deficient aquatic environments, either for the nitrate-storing microbes themselves, or for ambient microbial communities through nitrate leakage. This study links the spatial distribution of intracellular nitrate with the abundance and identity of nitrate-storing microbes in sediments of the Bornholm Basin, an environmental showcase for severe hypoxia. Intracellular nitrate (up to 270 nmol cm-3 sediment) was detected at all 18 stations along a 35-km transect through the basin and typically extended as deep as 1.6 cm into the sediment. Intracellular nitrate contents were particularly high at stations where chlorophyll contents suggested high settling rates of pelagic primary production. The depth distribution of intracellular nitrate matched that of the diatom-specific photopigment fucoxanthin in the upper 1.6 cm and calculations support that diatoms are the major nitrate-storing microbes in these sediments. In contrast, other known nitrate-storing microbes, such as sulfide-oxidizing bacteria and foraminifers, played only a minor role, if any. Strikingly, 18S rRNA gene sequencing revealed that the majority of the diatoms in the sediment were pelagic species. We conclude that intracellular nitrate stored by pelagic diatoms is transported to the seafloor by settling phytoplankton blooms, implying a so far overlooked 'biological nitrate pump'.

Sinks and Sources of Intracellular Nitrate in Gromiids

A substantial nitrate pool is stored within living cells in various benthic marine environments. The fate of this bioavailable nitrogen differs according to the organisms managing the intracellular nitrate (ICN). While some light has been shed on the nitrate carried by diatoms and foraminiferans, no study has so far followed the nitrate kept by gromiids. Gromiids are large protists and their ICN concentration can exceed 1000x the ambient nitrate concentration. In the present study we investigated gromiids from diverse habitats and showed that they contained nitrate at concentrations ranging from 1 to 370 mM. We used ¹⁵N tracer techniques to investigate the source of this ICN, and found that it originated both from active nitrate uptake from the environment and from intracellular production, most likely through bacterial nitrification. Microsensor measurements showed that part of the ICN was denitrified to N₂ when gromiids were exposed to anoxia. Denitrification seemed to be mediated by endobiotic bacteria because antibiotics inhibited denitrification activity. The active uptake of nitrate suggests that ICN plays a role in gromiid physiology and is not merely a consequence of the gromiid hosting a diverse bacterial community. Measurements of aerobic respiration rates and modeling of oxygen consumption by individual gromiid cells suggested that gromiids may occasionally turn anoxic by their own respiration activity and thus need strategies for coping with this self-inflicted anoxia.

Different Types of Diatom-Derived Extracellular Polymeric Substances Drive Changes in Heterotrophic Bacterial Communities from Intertidal Sediments

Intertidal areas support extensive diatom-rich biofilms. Such microphytobenthic (MPB) diatoms exude large quantities of extracellular polymeric substances (EPS) comprising polysaccharides, glycoproteins and other biopolymers, which represent a substantial carbon pool. However, degradation rates of different EPS components, and how they shape heterotrophic communities in sediments, are not well understood. An aerobic mudflat-sediment slurry experiment was performed in the dark with two different EPS carbon sources from a diatom-dominated biofilm: colloidal EPS (cEPS) and the more complex hot-bicarbonate-extracted EPS. Degradation rate constants determined over 9 days for three sediment fractions [dissolved organic carbon (DOC), total carbohydrates (TCHO), and (cEPS)] were generally higher in the colloidal-EPS slurries (0.105–0.123 d⁻¹) compared with the hot-bicarbonate-extracted-EPS slurries (0.060–0.096 d⁻¹). Addition of hot-bicarbonate-EPS resulted in large increases in dissolved nitrogen and phosphorous by the end of the experiment, indicating that the more complex EPS is an important source of regenerated inorganic nutrients. Microbial biomass increased ~4–6-fold over 9 days, and pyrosequencing of bacterial 16S rRNA genes revealed that the addition of both types of EPS greatly altered the bacterial community composition (from 0 to 9 days) compared to a control with no added EPS. Bacteroidetes (especially Tenacibaculum) and Verrucomicrobia increased significantly in relative abundance in both the hot-bicarbonate-EPS and colloidal-EPS treatments. These differential effects of EPS fractions on carbon-loss rates, nutrient regeneration and microbial community assembly improve our understanding of coastal-sediment carbon cycling and demonstrate the importance of diverse microbiota in processing this abundant pool of organic carbon.