Soil texture influences soil bacterial biomass in the permafrost-affected alpine desert of the Tibetan plateau

Soil properties explain the variability in tire wear particle effects in soil based on a laboratory test with 59 soils

Tire wear particles (TWPs) are among the most prevalent microplastics in the environment, with potential detrimental effects on ecosystem health and functionality. While little is known how the effects of TWPs on soil physicochemical and microbial properties vary across different soil types, and if so, which factors contribute to this variability. To address this knowledge gap, we conducted a laboratory experiment involving soils from 59 grassland plots across two sampling regions in Germany, each experienced varying land-use intensities. These soils were treated with (at a concentration of 10 mg g-1) and without TWPs. At harvest, we measured soil water-stable aggregates (WSA), pH, respiration, and decomposition rate. Our results revealed that TWPs negatively, neutrally, or positively impacted these parameters depending on soil types. Random forest analysis indicated that the variability in TWP effects was significantly explained by grazing frequency for WSA (14.5 %), by clay content for pH (9 %), by bulk density for respiration (7.9 %), and by silt content for decomposition rate (12 %). Partial dependence analysis and piecewise regression further suggested that low-intensity grazing (∼0.7-1.2) reduced TWP effects on WSA; clay content (420-550 g kg-1) increased TWP effects on pH; bulk density (0.75-0.88) decreased TWP effects, and silt content (460-620 g kg-1) enhanced TWP effects on decomposition rate, with the identified thresholds of 1.45, 353 g kg-1, 0.84, and 327 353 g kg-1, respectively. These results highlighted the context-dependent nature of TWP pollution, with significant variability observed across different sampling points. Additionally, our findings suggest that TWP pollution is particularly of concern in soils with high clay, silt, high bulk density, and areas with intensive land-use intensity. Our study contributes to a better understanding of the mechanisms by which TWPs impact soil, and how these effects are regulated by environmental factors.

Unraveling four decades of soil acidification on the Qinghai-Tibetan Plateau: Patterns, drivers, and future projections

Soil acidification poses escalating threats to ecosystem functions, yet its spatiotemporal dynamics and drivers across vulnerable high-altitude regions remain poorly resolved. Here, we integrate four-decade soil surveys (1980s-2020s) with machine learning to unravel acidification trajectories and future projections for the Qinghai-Tibetan Plateau (QTP), a critical yet fragile alpine ecosystem. Our analyses reveal pronounced east-west divergence: persistent acidification dominates eastern alpine meadow grasslands (lower pH, negative ΔpH), constrasting with alkalization trends in western steppe grasslands (higher pH, positive ΔpH). Temporally, soil acidification accelerated over decades, evidenced by decling pH of 7.95 in the 1980s to 7.90 in the 2020s, and increasingly negative ΔpH of -0.02 during 1980s-2000s to -0.03 during 2000s-2020s. Vertical stratification highlights surface-layer vulnerability, with the most rapid pH decline in top-surface layer and maximum acidification ΔpH magnitude in middle-surface layer. Key drivers include mean annual precipitation, aboveground gross primary productivity, and nitrogen deposition. All inversely correlated with pH. Future projections under different scenarios predict accelerated acidification, most serve underSSP5-8.5 and moderated under SSP1-1.9. These findings highlight the vulnerability of QTP grasslands to multifactorial acidification, urging targeted mitigation strategies to preserve this ecologically pivotal region.

Biodiversity in mountain soils above the treeline

Biological diversity in mountain ecosystems has been increasingly studied over the last decade. This is also the case for mountain soils, but no study to date has provided an overall synthesis of the current state of knowledge. Here we fill this gap with a first global analysis of published research on cryptogams, microorganisms, and fauna in mountain soils above the treeline, and a structured synthesis of current knowledge. Based on a corpus of almost 1400 publications and the expertise of 37 mountain soil scientists worldwide, we summarise what is known about the diversity and distribution patterns of each of these organismal groups, specifically along elevation, and provide an overview of available knowledge on the drivers explaining these patterns and their changes. In particular, we document an elevation-dependent decrease in faunal diversity above the treeline, while for cryptogams there is an initial increase above the treeline, followed by a decrease towards the nival belt. Thus, our data confirm the key role that elevation plays in shaping the biodiversity and distribution of these organisms in mountain soils. The response of prokaryote diversity to elevation, in turn, was more diverse, whereas fungal diversity appeared to be substantially influenced by plants. As far as available, we describe key characteristics, adaptations, and functions of mountain soil species, and despite a lack of ecological information about the uncultivated majority of prokaryotes, fungi, and protists, we illustrate the remarkable and unique diversity of life forms and life histories encountered in alpine mountain soils. By applying rule- as well as pattern-based literature-mining approaches and semi-quantitative analyses, we identified hotspots of mountain soil research in the European Alps and Central Asia and revealed significant gaps in taxonomic coverage, particularly among biocrusts, soil protists, and soil fauna. We further report thematic priorities for research on mountain soil biodiversity above the treeline and identify unanswered research questions. Building upon the outcomes of this synthesis, we conclude with a set of research opportunities for mountain soil biodiversity research worldwide. Soils in mountain ecosystems above the treeline fulfil critical functions and make essential contributions to life on land. Accordingly, seizing these opportunities and closing knowledge gaps appears crucial to enable science-based decision making in mountain regions and formulating laws and guidelines in support of mountain soil biodiversity conservation targets.

Exploring prokaryotic diversity in permafrost-affected soils of Ladakh's Changthang region and its geochemical drivers

Global warming due to climate change has substantial impact on high-altitude permafrost affected soils. This raises a serious concern that the microbial degradation of sequestered carbon can result in alteration of the biogeochemical cycles. Therefore, the characterization of permafrost affected soil microbiomes, especially of unexplored high-altitude, low oxygen arid region, is important for predicting their response to climate change. This study presents the first report of the bacterial diversity of permafrost-affected soils in the Changthang region of Ladakh. The relationship between soil pH, organic carbon, electrical conductivity, and available micronutrients with the microbial diversity was investigated. Amplicon sequencing of permafrost affected soil samples from Jukti and Tsokar showed that Proteobacteria and Actinobacteria were the dominant phyla in all samples. The genera Brevitalea, Chthoniobacter, Sphingomonas, Hydrogenispora, Clostridium, Gaiella, Gemmatimonas were relatively abundant in the Jukti samples whereas the genera Thiocapsa, Actinotalea, Syntrophotalea, Antracticibcterium, Luteolibacter, Nitrospirillum dominated the Tsokar sample. Correlation analyses highlighted the influence of soil geochemical parameters on the bacterial community structure. PCoA analyses showed that the bacterial beta diversity varied significantly between the sampling locations (PERMANOVA test (F-value: 2.3316; R2 = 0.466, p = 0.001) and similar results were also obtained while comparing genus abundance data using the ANOSIM test (R = 0.345, p = 0.007).

Environmental matrix and moisture influence soil microbial phenotypes in a simplified porous media incubation

Soil moisture and porosity regulate microbial metabolism by influencing factors, such as system chemistry, substrate availability, and soil connectivity. However, accurately representing the soil environment and establishing a tractable microbial community that limits confounding variables is difficult. Here, we use a reduced-complexity microbial consortium grown in a glass bead porous media amended with chitin to test the effects of moisture and a structural matrix on microbial phenotypes. Leveraging metagenomes, metatranscriptomes, metaproteomes, and metabolomes, we saw that our porous media system significantly altered microbial phenotypes compared with the liquid incubations, denoting the importance of incorporating pores and surfaces for understanding microbial phenotypes in soils. These phenotypic shifts were mainly driven by differences in expression of Streptomyces and Ensifer, which included a significant decrease in overall chitin degradation between porous media and liquid. Our findings suggest that the success of Ensifer in porous media is likely related to its ability to repurpose carbon via the glyoxylate shunt amidst a lack of chitin degradation byproducts while potentially using polyhydroxyalkanoate granules as a C source. We also identified traits expressed by Ensifer and others, including motility, stress resistance, and carbon conservation, that likely influence the metabolic profiles observed across treatments. Together, these results demonstrate that porous media incubations promote structure-induced microbial phenotypes and are likely a better proxy for soil conditions than liquid culture systems. Furthermore, they emphasize that microbial phenotypes encompass not only the multi-enzyme pathways involved in metabolism but also include the complex interactions with the environment and other community members.IMPORTANCESoil moisture and porosity are critical in shaping microbial metabolism. However, accurately representing the soil environment in tractable laboratory experiments remains a challenging frontier. Through our reduced complexity microbial consortium experiment in porous media, we reveal that predicting microbial metabolism from gene-based pathways alone often falls short of capturing the intricate phenotypes driven by cellular interactions. Our findings highlight that porosity and moisture significantly affect chitin decomposition, with environmental matrix (i.e., glass beads) shifting community metabolism towards stress tolerance, reduced resource acquisition, and increased carbon conservation, ultimately invoking unique microbial strategies not evident in liquid cultures. Moreover, we find evidence that changes in moisture relate to community shifts regarding motility, transporters, and biofilm formation, which likely influence chitin degradation. Ultimately, our incubations showcase how reduced complexity communities can be informative of microbial metabolism and present a useful alternative to liquid cultures for studying soil microbial phenotypes.

Methane emissions from thermokarst lakes must emphasize the ice-melting impact on the Tibetan Plateau

Thermokarst lakes, serving as significant sources of methane (CH4), play a crucial role in affecting the feedback of permafrost carbon cycle to global warming. However, accurately assessing CH4 emissions from these lakes remains challenging due to limited observations during lake ice melting periods. In this study, by integrating field surveys with machine learning modeling, we offer a comprehensive assessment of present and future CH4 emissions from thermokarst lakes on the Tibetan Plateau. Our results reveal that the previously underestimated CH4 release from lake ice bubble and water storage during ice melting periods is 11.2 ± 1.6 Gg C of CH4, accounting for 17 ± 4% of the annual total release from lakes. Despite thermokarst lakes cover only 0.2% of the permafrost area, they annually emit 65.5 ± 10.0 Gg C of CH4, which offsets 6.4% of the net carbon sink in alpine grasslands on the plateau. Considering the loss of lake ice, the expansion of thermokarst lakes is projected to lead to 1.1-1.2 folds increase in CH4 emissions by 2100. Our study allows foreseeing future CH4 emissions from the rapid expanding thermokarst lakes and sheds new lights on processes controlling the carbon-climate feedback in alpine permafrost ecosystems.

Characterization of Microbial Carbon Metabolism in Karst Soils from Citrus Orchards and Analysis of Its Environmental Drivers

Karst regions (KRs) have created significant karst carbon sinks globally through the carbon cycling process involving "water-carbon dioxide-carbonate rock-biota". Soil organic carbon (SOC) represents a crucial component of these carbon sinks. Microorganisms play a vital role in the soil carbon cycle, influencing the formation and preservation of SOC. Therefore, investigating the carbon metabolism of soil microorganisms in KRs is essential for clarifying the unique biogeochemical cycling mechanisms within these regions. In this paper, soils from karst regions (KRs), mixed regions (MRs) and non-karst regions (NKRs) were collected from citrus orchards in Mao Village, Karst Experimental Field, Guilin City, Guangxi Zhuang Autonomous Region, China. The ability to use different carbon sources was analyzed by Biolog-Eco microtiter plate technique; the number of microorganisms was detected by the plate colony counting method, and the microbial biomass was determined by the chloroform fumigation method. The results showed that the soil bacterial number (5.69 ± 0.39 × 106 CFU/g), microbial biomass carbon (MBC) (608.24 ± 63.80 mg/kg), microbial quotient (SMQ) (3.45 ± 0.18%), and Shannon's index (H') (3.28 ± 0.05) of the KR were significantly higher than those of the NKR. The pH showed a significant positive correlation (p < 0.05) with the bacterial number and H' (p < 0.05); SOC showed a highly significant positive correlation with bacterial number (p < 0.01), and a significant positive correlation with MBC, H', and average well change development (AWCD) (p < 0.05). Total nitrogen (TN) showed a significant positive correlation with MBC (p < 0.05); available potassium (AK) showed a significant positive correlation with bacterial number and MBC (p < 0.05). Exchangeable calcium (Ca2+) demonstrated significant positive correlations with bacterial number, MBC, and H' (p < 0.05). The above results indicate that soil bacterial number, carbon metabolic ability and diversity were highest in the KR. pH, SOC and exchangeable Ca2+ were the main influencing factors for the differentiation of soil microbial carbon metabolic diversity between the KR and NKR.

The Process of Soil Carbon Sequestration in Different Ecological Zones of Qingtu Lake in the Arid-Semi-Arid Region of Western China

As a vital component of the global carbon pool, soils in arid and semi-arid regions play a significant role in carbon sequestration. In the context of global warming, increasing temperatures and moisture levels promote the transformation of barren land into wetlands, enhancing carbon sinks. However, the overdevelopment of oases and excessive extraction of groundwater lead to the opposite effect, reducing carbon sequestration. This study examines two soil types-meadow soil (MS) and swamp soil (SS)-from Qingtu Lake, an arid lake in western China. It analyzes the sources of soil inorganic carbon, the composition and origin of dissolved organic matter (DOM), and the relationships between microbes, soil organic carbon (SOC), soil inorganic carbon (SIC), mineral composition, and soil texture. The results indicate that inorganic carbon in the study area consists of both primary carbonate minerals and secondary pedogenic carbonates. The DOM primarily consists of two components, both identified as terrestrial humic substances. In meadow soils, bacterial activity drives the weathering of plagioclase, which releases Ca2+ necessary for the formation of pedogenic carbonates. Plagioclase also provides colonization sites for microbes and, along with microbial activity, participates in the soil carbon cycle. Within the soil community, bacteria appear to play a more critical role than fungi. In contrast, microbial contributions to the carbon cycle in swamp soils are weaker, with minerals predominantly interacting with organic carbon to form mineral-associated organic matter, thus promoting the soil carbon cycle. These findings have important implications for understanding soil carbon sinks under different micro-ecological conditions in arid and semi-arid regions. Through targeted human intervention, it is possible to enhance carbon sequestration in these areas, contributing to the mitigation of global climate change.

Impacts of multiple environmental factors on soil bacterial community assembly in heavy metal polluted paddy fields

Soil microorganisms play pivotal roles in driving essential biogeochemical processes in terrestrial ecosystems, and they are sensitive to heavy metal pollution. However, our understanding of multiple environmental factors interaction in heavy metal polluted paddy fields to shape microbial community assembly remain limited. In the current study, we used 16S rRNA amplicon sequencing to characterize the microbial community composition in paddy soils collected from a typical industry town in Taihu region, eastern China. The results revealed that Cd and Pb were the major pollutant, and Proteobacteria, Acidobacteria and Chloroflexi were the dominate indigenous bacterial phyla. Linear regression and random forest analysis demonstrated that soil pH was the most important predictor of bacterial diversity. Mantel analysis showed that bacterial community structure was mainly driven by pH, CEC, silt, sand, AK, total Cd and DTPA-Cd. The constructed bacterial co-occurrence network, utilizing a random matrix theory-based approach, exhibited non-random with scale-free and modularity features. The major modules within the networks also showed significant correlations with soil pH. Overall, our study indicated that soil physiochemical properties made predominant contribution to bacterial community diversity, structure and their association in Cd/Pb polluted paddy fields. These findings expand our knowledge of the key environmental drivers and co-occurrence patterns of bacterial community in polluted paddy fields.

The effects of litter input and increased precipitation on soil microbial communities in a temperate grassland

Global warming has contributed to shifts in precipitation patterns and increased plant productivity, resulting in a significant increase in litter input into the soils. The enhanced litter input, combined with higher levels of precipitation, may potentially affect soil microbial communities. This study aims to investigate the effects of litter input and increased precipitation on soil microbial biomass, community structure, and diversity in a temperate meadow steppe in northeastern China. Different levels of litter input (0%, +30%, +60%) and increased precipitation (0%, +15%, +30%) were applied over a three-year period (2015-2017). The results showed that litter input significantly increased the biomass of bacteria and fungi without altering their diversity, as well as the ratio of bacterial to fungal biomass. Increased precipitation did not have a notable effect on the biomass and diversity of bacteria and fungi, but it did increase the fungal-to-bacterial biomass ratio. However, when litter input and increased precipitation interacted, bacterial diversity significantly increased while the fungal-to-bacterial biomass ratio remained unchanged. These findings indicate that the projected increases in litter and precipitation would have a substantial impact on soil microbial communities. In energy-and water-limited temperate grasslands, the additional litter inputs and increased precipitation contribute to enhanced nutrient and water availability, which in turn promotes microbial growth and leads to shifts in community structure and diversity.

Soil texture and microorganisms dominantly determine the subsoil carbonate content in the permafrost-affected area of the Tibetan Plateau

Under climate warming conditions, storage and conversion of soil inorganic carbon (SIC) play an important role in regulating soil carbon (C) dynamics and atmospheric CO₂ content in arid and semi-arid areas. Carbonate formation in alkaline soil can fix a large amount of C in the form of inorganic C, resulting in soil C sink and potentially slowing global warming trends. Therefore, understanding the driving factors affecting carbonate mineral formation can help better predict future climate change. Till date, most studies have focused on abiotic drivers (climate and soil), whereas a few examined the effects of biotic drivers on carbonate formation and SIC stock. In this study, SIC, calcite content, and soil microbial communities were analyzed in three soil layers (0-5 cm, 20-30 cm, and 50-60 cm) on the Beiluhe Basin of Tibetan Plateau. Results revealed that in arid and semi-arid areas, SIC and soil calcite content did not exhibit significant differences among the three soil layers; however, the main factors affecting the calcite content in different soil layers are different. In the topsoil (0-5 cm), the most important predictor of calcite content was soil water content. In the subsoil layers 20-30 cm and 50-60 cm, the ratio of bacterial biomass to fungal biomass (B/F) and soil silt content, respectively, had larger contributions to the variation of calcite content than the other factors. Plagioclase provided a site for microbial colonization, whereas Ca²⁺ contributed in bacteria-mediated calcite formation. This study aims to highlight the importance of soil microorganisms in managing soil calcite content and reveals preliminary results on bacteria-mediated conversion of organic to inorganic C.