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Etesami H, Santoyo G. Boosting Rhizobium-legume symbiosis: The role of nodule non-rhizobial bacteria in hormonal and nutritional regulation under stress. Microbiol Res 2025; 297:128192. [PMID: 40279725 DOI: 10.1016/j.micres.2025.128192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 04/19/2025] [Accepted: 04/22/2025] [Indexed: 04/29/2025]
Abstract
Legumes are vital for sustainable agriculture due to their unique ability to fix atmospheric nitrogen through symbiosis with rhizobia. Recent research has highlighted the significant role of non-rhizobial bacteria (NRB) within root nodules in enhancing this symbiotic relationship, particularly under stress conditions. These NRB exhibit plant growth-promoting (PGP) metabolites by modulating phytohormones and enhancing nutrient availability, thereby improving nodule development and function. Bacteria produce essential hormones, such as auxin (indole-3-acetic acid), cytokinins, gibberellic acids abscisic acid, jasmonic acid, and salicylic acid, and enzymes like 1-aminocyclopropane-1-carboxylate deaminase, which mitigate ethylene's inhibitory effects on nodulation. Furthermore, NRB contribute to nutrient cycling by solubilizing minerals like phosphate, potassium, silicate, zinc, and iron, essential for effective nitrogen fixation. The co-inoculation of legumes with both rhizobia and NRB with multiple PGP metabolites has shown synergistic effects on plant growth, yield, and resilience against environmental stresses. This review emphasizes the need to further explore the diversity and functional roles of nodule-associated non-rhizobial endophytes, aiming to optimize legume productivity through improved nutrient and hormonal management. Understanding these interactions is crucial for developing sustainable agricultural practices that enhance the efficiency of legume-rhizobia symbiosis, ultimately contributing to food security and ecosystem health.
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Affiliation(s)
- Hassan Etesami
- Department of Soil Science, University of Tehran, Tehran, Iran.
| | - Gustavo Santoyo
- Institute of Chemical and Biological Research, Universidad Michoacana de San Nicolás de Hidalgo (UMSNH), Morelia 58095, Mexico
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Oliveira CEDS, Sena Oliveira TJS, Jalal A, Fernandes GC, Bastos ADC, da Silva MR, Sant’Ana GR, Aguilar JV, de Camargos LS, Zoz T, Teixeira Filho MCM. Inoculation and co-inoculation of lettuce and arugula hydroponically influence nitrogen metabolism, plant growth, nutrient acquisition and photosynthesis. FRONTIERS IN PLANT SCIENCE 2025; 16:1547821. [PMID: 40308300 PMCID: PMC12040907 DOI: 10.3389/fpls.2025.1547821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Accepted: 03/31/2025] [Indexed: 05/02/2025]
Abstract
The objective of this study was to investigate the effects of single and combined inoculations of A. brasilense, B. subtilis and P. fluorescens on lettuce and arugula grown in a hydroponic system. The study was carried out in a greenhouse and was designed in randomized blocks with five replications. The treatments consisted of inoculation with A. brasilense, B. subtilis and P. fluorescens and co-inoculation with A. brasilense + B. subtilis, A. brasilense + P. fluorescens, B. subtilis + P. fluorescens and A. brasilense + B. subtilis + P. fluorescens via nutrient solution. An increase in the length and fresh mass of the shoot and leaf chlorophyll concentrations of arugula and lettuce was observed under co-inoculations of A. brasilense + P. fluorescens and B. subtilis + P. fluorescens. Greater length, fresh mass and volume of the lettuce root system were observed under the co-inoculations of A. brasilense + B. subtilis, A. brasilense + P. fluorescens and B. subtilis + P. fluorescens in arugula under the inoculations of A. brasilense and A. brasilense + P. fluorescens. Greater nitrate reductase activity was detected in leaves, and lower nitrate accumulation was detected in lettuce and arugula under inoculations with A. brasilense, P. fluorescens and B. subtilis + P. fluorescens. The greatest accumulation of N, P, K, Ca and Mg in the lettuce shoot was obtained under inoculation with P. fluorescens, A. brasilense + P. fluorescens and B. subtilis + P. fluorescens. Co-inoculation with A. brasilense + P. fluorescens and B. subtilis + P. fluorescens was the most efficient combination for increasing the growth, nutrient acquisition and functioning of nitrogen metabolism in arugula lettuce plants.
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Affiliation(s)
| | - Thaissa Julyanne Soares Sena Oliveira
- Department of Plant Protection, Rural Engineering and Soils, São Paulo State University (UNESP), School of Engineering, Ilha Solteira, São Paulo, Brazil
| | - Arshad Jalal
- The BioActives Lab, Center for Desert Agriculture (CDA) Division of Biological and Environmental Sciences (BESE) King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Guilherme Carlos Fernandes
- Department of Plant Protection, Rural Engineering and Soils, São Paulo State University (UNESP), School of Engineering, Ilha Solteira, São Paulo, Brazil
| | - Andréa de Castro Bastos
- Department of Plant Protection, Rural Engineering and Soils, São Paulo State University (UNESP), School of Engineering, Ilha Solteira, São Paulo, Brazil
- Salesian Auxilium Catholic University Center, Araçatuba, São Paulo, Brazil
| | - Marcelo Rinaldi da Silva
- Department of Plant Protection, Rural Engineering and Soils, São Paulo State University (UNESP), School of Engineering, Ilha Solteira, São Paulo, Brazil
| | - Gabriela Rodrigues Sant’Ana
- Department of Agronomy, State University of Mato Grosso do Sul – UEMS, Cassilândia, Mato Grosso do Sul, Brazil
| | - Jailson Vieira Aguilar
- Department of Biology and Zootechny, São Paulo State University (UNESP), School of Engineering, Ilha Solteira, São Paulo, Brazil
| | - Liliane Santos de Camargos
- Department of Biology and Zootechny, São Paulo State University (UNESP), School of Engineering, Ilha Solteira, São Paulo, Brazil
| | - Tiago Zoz
- Department of Agronomy, State University of Mato Grosso do Sul – UEMS, Mundo Novol, Mato Grosso do Sul, Brazil
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Fouad N, El-Zayat EM, Amr D, El-Khishin DA, Abd-Elhalim HM, Hafez A, Radwan KH, Hamwieh A, Tadesse W. Characterizing Wheat Rhizosphere Bacterial Microbiome Dynamics Under Salinity Stress: Insights from 16S rRNA Metagenomics for Enhancing Stress Tolerance. PLANTS (BASEL, SWITZERLAND) 2025; 14:1033. [PMID: 40219101 PMCID: PMC11990312 DOI: 10.3390/plants14071033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2025] [Revised: 03/13/2025] [Accepted: 03/19/2025] [Indexed: 04/14/2025]
Abstract
Salinity is one of the most important abiotic stress factors affecting wheat production. Salt in the soil is a major environmental stressor that can affect the bacterial community in the rhizosphere of wheat. The bacteria in the plant's rhizosphere promote growth and stress tolerance, which vary by variety and location. Nevertheless, the soil harbors some of the most diverse microbial communities, while the rhizosphere selectively recruits according to the needs of plants in a complex harmonic regulation. The microbial composition and diversity under normal and saline conditions were assessed by comparing the rhizosphere of wheat with soil using 16S rRNA gene amplicon sequencing, highlighting the number of operational taxonomic units (OTUs). Taxonomic analyzes showed that the bacterial community was predominantly and characteristically composed of the phyla Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, Verrucomicrobia, and Fibrobacteres, representing the usual microbial profile for the rhizosphere of wheat. Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions. This was observed even with unchanged soil type and genotype. These patterns occurred despite the same soil type and genotype, with salinity being the only variable. The collective action of these bacterial phyla in the rhizosphere not only improves nutrient availability but also induces systemic resistance in the plants. This synergistic effect improves plant resistance to salt stress and supports the development of salt-tolerant wheat varieties. These microbial signatures could improve our understanding of plant-microbe interactions and support the development of microbiome-based solutions for salt stress.
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Affiliation(s)
- Nourhan Fouad
- International Center of Agricultural Research in Dry Areas (ICARDA), Giza 11742, Egypt;
| | - Emad M. El-Zayat
- Department of Biotechnology, Faculty of Science, Cairo University, Giza 12613, Egypt; (E.M.E.-Z.); (D.A.); (A.H.)
| | - Dina Amr
- Department of Biotechnology, Faculty of Science, Cairo University, Giza 12613, Egypt; (E.M.E.-Z.); (D.A.); (A.H.)
| | - Dina A. El-Khishin
- Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center (ARC), Giza 12619, Egypt; (D.A.E.-K.); (H.M.A.-E.)
| | - Haytham M. Abd-Elhalim
- Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center (ARC), Giza 12619, Egypt; (D.A.E.-K.); (H.M.A.-E.)
- School of Biotechnology, Badr University in Cairo (BUC), Cairo 11829, Egypt
| | - Amr Hafez
- Department of Biotechnology, Faculty of Science, Cairo University, Giza 12613, Egypt; (E.M.E.-Z.); (D.A.); (A.H.)
| | - Khaled H. Radwan
- Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center (ARC), Giza 12619, Egypt; (D.A.E.-K.); (H.M.A.-E.)
- National Biotechnology Network of Expertise (NBNE), Academy of Scientific Research (ASRT), Cairo 11516, Egypt
| | - Aladdin Hamwieh
- International Center of Agricultural Research in Dry Areas (ICARDA), Giza 11742, Egypt;
| | - Wuletaw Tadesse
- International Center of Agricultural Research in Dry Areas (ICARDA), Rabat 10090, Morocco;
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Inacio KAM, Abreu MC, Oliveira TCC, Santos CC, Wagner FE, Mauad M. Azospirillum brasilense, urease inhibitor, and sulfur contributes on initial growth of wheat. BRAZ J BIOL 2025; 85:e289479. [PMID: 39969003 DOI: 10.1590/1519-6984.289479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2024] [Accepted: 11/13/2024] [Indexed: 02/20/2025] Open
Abstract
Wheat (Triticum aestivum L.) is an annual crop with potential for cultivation expansion, requiring nutritional management that can favor the nitrogen use efficient and plant growth. We aimed to evaluate the initial growth of wheat in function of different nitrogen fertilization management, without or with Azospirillum brasilense and sulfur. The treatments consisted of the following management: CK (without cover fertilization), urea, urea with urease inhibitor N-(n-butyl) thiophosphoric triamide (NBPT), urea NBPT (80%) + ammonium sulfate (20%), without cover fertilizer + A. brasilense, urea + A. brasilense, urea NBPT + A. brasilense, and urea NBPT (80%) + ammonium sulfate (20%) + A. brasilense. Nutritional management contributed to phenotypic responses to shoot of the plants and culm diameter, especially compared to CK plants. Plants with NBPT + sulfur, without and with A. brasilense showed a higher chlorophyll index. CK plants and those only with A. brasilense had a lower number of tillers and numerically the shoot dry mass. Nutritional management with A. brasilense, urease inhibitor and sulfur contributed to the initial growth of wheat plants.
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Affiliation(s)
- K A M Inacio
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - M C Abreu
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - T C C Oliveira
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - C C Santos
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - F E Wagner
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - M Mauad
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
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Hwang HH, Huang YT, Chien PR, Huang FC, Wu CL, Chen LY, Hung SHW, Pan IC, Huang CC. A plant endophytic bacterium Burkholderia seminalis strain 869T2 increases plant growth under salt stress by affecting several phytohormone response pathways. BOTANICAL STUDIES 2025; 66:7. [PMID: 39904843 PMCID: PMC11794907 DOI: 10.1186/s40529-025-00453-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Accepted: 01/11/2025] [Indexed: 02/06/2025]
Abstract
BACKGROUND Due to global warming and gradual climate change, plants are subjected to a wide range of environmental stresses, adversely affecting plant growth and production worldwide. Plants have developed various mechanisms to overpower these abiotic stresses, including salt stress, drought, and high light intensity. Apart from their own defense strategies, plants can get help from the beneficial endophytic bacteria inside host plants and assist them in enduring severe growth conditions. A previously isolated plant endophytic bacteria, Burkholderia seminalis 869T2, from vetiver grass can produce auxin, synthesize siderophore, and solubilize phosphate. The B. seminalis 869T2 can colonize inside host plants and increase the growth of bananas, Arabidopsis, and several leafy vegetables. RESULTS We further demonstrated that different growth parameters of Arabidopsis and pak choi plants were significantly increased after inoculating the B. seminalis 869T2 under normal, salt, and drought stress conditions compared to the mock-inoculated plants. Both transcriptome analysis and quantitative real-time PCR results showed that expression levels of genes related to phytohormone signal transduction pathways, including auxin, gibberellin, cytokinin, and abscisic acid were altered in Arabidopsis plants after inoculated with the strain 869T2 under salt stress, in comparison to the mock-inoculated control with salt treatments. Furthermore, the accumulation levels of hydrogen peroxide (H2O2), electrolyte leakage (EL), and malondialdehyde (MDA) were lower in the 869T2-inoculated Arabidopsis and pak choi plants than in control plants under salt and drought stresses. CONCLUSIONS The plant endophytic bacterium strain B. seminalis 869T2 may affect various phytohormone responses and reduce oxidative stress damage to increase salt and drought stress tolerances of host plants.
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Affiliation(s)
- Hau-Hsuan Hwang
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan.
- Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung, 402, Taiwan.
- Advanced Plant and Food Crop Biotechnology Center, National Chung Hsing University, Taichung, 402, Taiwan.
| | - Yu-Ting Huang
- Department of Horticulture, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan
| | - Pei-Ru Chien
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan
| | - Fan-Chen Huang
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan
| | - Chih-Lin Wu
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan
| | - Liang-Yu Chen
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan
| | - Shih-Hsun Walter Hung
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan
| | - I-Chun Pan
- Department of Horticulture, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan.
- Advanced Plant and Food Crop Biotechnology Center, National Chung Hsing University, Taichung, 402, Taiwan.
| | - Chieh-Chen Huang
- Department of Life Sciences, National Chung Hsing University, No. 145, Xingda Road, Taichung, 402, Taiwan.
- Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung, 402, Taiwan.
- Advanced Plant and Food Crop Biotechnology Center, National Chung Hsing University, Taichung, 402, Taiwan.
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Choden P, Poolpak T, Pokethitiyook P, Yang KM, Kruatrachue M. In situ bioaugmented phytoremediation of cadmium and crude oil co-contaminated soil by Ocimum gratissimum in association with PGPR Micrococcus luteus WN01. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2024; 27:298-306. [PMID: 39503056 DOI: 10.1080/15226514.2024.2415535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2025]
Abstract
Heavy metals and petroleum oil are the two most important contaminants in the environment. Currently, phytoremediation is regarded as an effective and affordable solution that allows the attenuation of toxic pollutants through the use of plants. Not many studies are carried out regarding the use of aromatic plants capable of remediating soil that is co-contaminated by heavy metal and petroleum hydrocarbons. A pot experiment was conducted to investigate the influence of cadmium-resistant PGPR Micrococcus luteus on the phytoremediation efficiency of Ocimum gratissimum in Cd and petroleum co-contaminated soil. The plants were harvested after 60 days of treatment and their growth and biomass were determined. The accumulation of Cd in plant shoots and roots was determined. The residual petroleum hydrocarbon concentration during the 60 days of the phytoremediation experiment was determined using GC-FID. O. gratissimum with M. luteus showed the highest Cd accumulation (14.05 mg kg-1) and the highest reduction of TPH (46.64%). M. luteus ameliorated contaminant toxicity and promoted biomass production of O. gratissimum. These results demonstrated that O. gratissimum in combination with M. luteus can be efficiently used to remediate Cd and petroleum-co-contaminated soils.
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Affiliation(s)
- Pem Choden
- Department of Biology, Mahidol University, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), OPS, MHESI, Bangkok, Thailand
| | - Toemthip Poolpak
- Department of Biology, Mahidol University, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), OPS, MHESI, Bangkok, Thailand
| | - Prayad Pokethitiyook
- Department of Biology, Mahidol University, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), OPS, MHESI, Bangkok, Thailand
| | - Kwang Mo Yang
- Department of Biology, Mahidol University, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), OPS, MHESI, Bangkok, Thailand
| | - Maleeya Kruatrachue
- Department of Biology, Mahidol University, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), OPS, MHESI, Bangkok, Thailand
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Li Q, Zhou S. Effect of Paenibacillus favisporus CHP14 inoculation on selenium accumulation and tolerance of Pakchoi ( Brassica chinensis L.) under exogenous selenite treatments. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2024:1-16. [PMID: 39394951 DOI: 10.1080/15226514.2024.2414212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2024]
Abstract
The effects of Paenibacillus favisporus CHP14 inoculation on selenium (Se) accumulation and Se tolerance of Pakchoi were studied by a pot experiment conducted in greenhouse. The results revealed that the growth traits such as plant height, root length, and biomass were significantly elevated during CHP14 treatment at 0 ∼ 8.0 mg·kg-1 Se(IV) levels. CHP14-inoculated plants accumulated more Se in root and shoot, which were 24.1%∼57.3% and 7.5%∼50.9% higher than those of non-inoculated plants. The contents of leaf nitrogen (N), phosphorus (P), magnesium (Mg), and iron (Fe), as well as the ratio of indoleacetic acid and abscisic acid contents (IAA/ABA) were increased by CHP14 inoculation, and positively associated with photosynthetic pigment contents (p < 0.05). At ≥ 4.0 mg·kg-1 Se(IV) levels, superoxide dismutase, peroxidase, and glutathione peroxidase activities of Pakchoi roots were increased with CHP14 inoculation, by 9.9%∼17.1%, 28.4%∼40.7%, and 7.4%∼15.3%, respectively. Moreover, CHP14 inoculation enhanced ascorbate-glutathione (AsA-GSH) metabolism in roots by upregulating the related enzymes activities and antioxidant contents under excess Se(IV) stress. These findings suggest that CHP14 is beneficial to improve plant growth and enhance Se(IV) resistance of Pakchoi, and can be exploited as potential inoculants for phytoremediation process in Se contaminated soil.
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Affiliation(s)
- Qi Li
- College of Ecology and Environment, Anhui Normal University, Wuhu, China
- School of Environment and Surveying Engineering, Suzhou University, Suzhou, China
| | - Shoubiao Zhou
- College of Ecology and Environment, Anhui Normal University, Wuhu, China
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8
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Akhtyamova Z, Arkhipova T, Sharipova G, Ivanov R, Nuzhnaya T, Kudoyarova G, Veselov D. The Effect of Plant Growth-Promoting Bacteria Bacillus subtilis IB-22 on the Hydraulic Conductivity and Abundance of PIP2 Aquaporins in the Roots of an Abscisic Acid-Deficient Barley Mutant. Int J Mol Sci 2024; 25:10706. [PMID: 39409034 PMCID: PMC11476997 DOI: 10.3390/ijms251910706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Revised: 10/02/2024] [Accepted: 10/02/2024] [Indexed: 10/20/2024] Open
Abstract
Little information is available on how rhizosphere bacteria affect abscisic acid (ABA) levels in plants and whether these bacterial effects are associated with improved plant water status. In this study, we tested the hypothesis that the stimulation of plant growth may be associated with the ability of ABA to increase the hydraulic conductivity of roots through the up-regulation of aquaporin. To do this, we studied the effect of bacteria capable of producing ABA on a barley mutant deficient in this hormone. Measurements of hydraulic conductivity of the ABA-deficient barley mutant Az34 showed that its tissues exhibited a reduced ability to conduct water, which correlated with lower ABA content in plants. The inoculation of Bacillus subtilis IB-22 stimulated the growth of both the mutant and its parent variety. Also, under the influence of bacteria, the ABA content in plants increased, and the increase was more significant in the mutant. This effect was accompanied by an increase in hydraulic conductivity in the roots of the ABA-deficient mutant, and immunolocalization using antibodies against PIP2;1 and PIP2;2 aquaporins revealed an increase in their abundance. Thus, the results obtained support the hypothesis about the importance of a sufficiently high ABA content in plants to maintain the abundance of aquaporins, hydraulic conductivity and the growth of barley plants.
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Affiliation(s)
| | | | | | | | | | | | - Dmitry Veselov
- Ufa Institute of Biology, Ufa Federal Research Centre, Russian Academy of Sciences, Prospekt Oktyabrya 69, 450054 Ufa, Russia; (Z.A.); (T.A.); (G.S.); (R.I.); (T.N.); (G.K.)
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9
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Park D, Jang J, Seo DH, Kim Y, Jang G. Bacillus velezensis GH1-13 enhances drought tolerance in rice by reducing the accumulation of reactive oxygen species. FRONTIERS IN PLANT SCIENCE 2024; 15:1432494. [PMID: 39391772 PMCID: PMC11465243 DOI: 10.3389/fpls.2024.1432494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Accepted: 08/30/2024] [Indexed: 10/12/2024]
Abstract
Plant growth-promoting rhizobacteria colonize the rhizosphere through dynamic and intricate interactions with plants, thereby providing various benefits and contributing to plant growth. Moreover, increasing evidence suggests that plant growth-promoting rhizobacteria affect plant tolerance to abiotic stress, but the underlying molecular mechanisms remain largely unknown. In this study, we investigated the effect of Bacillus velezensis strain GH1-13 on drought stress tolerance in rice. Phenotypical analysis, including the measurement of chlorophyll content and survival rate, showed that B. velezensis GH1-13 enhances rice tolerance to drought stress. Additionally, visualizing ROS levels and quantifying the expression of ROS-scavenging genes revealed that GH1-13 treatment reduces ROS accumulation under drought stress by activating the expression of antioxidant genes. Furthermore, the GH1-13 treatment stimulated the jasmonic acid response, which is a key phytohormone that mediates plant stress tolerance. Together with the result that jasmonic acid treatment promotes the expression of antioxidant genes, these findings indicate that B. velezensis GH1-13 improves drought tolerance in rice by reducing ROS accumulation and suggest that activation of the jasmonic acid response is deeply involved in this process.
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Affiliation(s)
- Dongryeol Park
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Jinwoo Jang
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Deok Hyun Seo
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Yangseon Kim
- Department of Research and Development, Center for Industrialization of Agricultural and Livestock Microorganisms, Jeongeup-si, Republic of Korea
| | - Geupil Jang
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
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10
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Funnicelli MIG, de Carvalho LAL, Teheran-Sierra LG, Dibelli SC, Lemos EGDM, Pinheiro DG. Unveiling genomic features linked to traits of plant growth-promoting bacterial communities from sugarcane. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 947:174577. [PMID: 38981540 DOI: 10.1016/j.scitotenv.2024.174577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 07/04/2024] [Accepted: 07/05/2024] [Indexed: 07/11/2024]
Abstract
Microorganisms are ubiquitous, and those inhabiting plants have been the subject of several studies. Plant-associated bacteria exhibit various biological mechanisms that enable them to colonize host plants and, in some cases, enhance their fitness. In this study, we describe the genomic features predicted to be associated with plant growth-promoting traits in six bacterial communities isolated from sugarcane. The use of highly accurate single-molecule real-time sequencing technology for metagenomic samples from these bacterial communities allowed us to recover 17 genomes. The taxonomic assignments for the binned genomes were performed, revealing taxa distributed across three main phyla: Bacillota, Bacteroidota, and Pseudomonadota, with the latter being the most representative. Subsequently, we functionally annotated the metagenome-assembled genomes (MAGs) to characterize their metabolic pathways related to plant growth-promoting traits. Our study successfully identified the enrichment of important functions related to phosphate and potassium acquisition, modulation of phytohormones, and mechanisms for coping with abiotic stress. These findings could be linked to the robust colonization of these sugarcane endophytes.
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Affiliation(s)
- Michelli Inácio Gonçalves Funnicelli
- Laboratory of Bioinformatics, Department of Agricultural, Livestock and Environmental Biotechnology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil; Graduate Program in Agricultural and Livestock Microbiology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil
| | - Lucas Amoroso Lopes de Carvalho
- Laboratory of Bioinformatics, Department of Agricultural, Livestock and Environmental Biotechnology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil; Graduate Program in Agricultural and Livestock Microbiology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil
| | - Luis Guillermo Teheran-Sierra
- Agronomy Research Program, Colombian Oil Palm Research Center, Cenipalma, Calle 98 No. 70-91, Piso 14, Bogotá 111121, Colombia
| | - Sabrina Custodio Dibelli
- Laboratory of Bioinformatics, Department of Agricultural, Livestock and Environmental Biotechnology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil; Graduate Program in Agricultural and Livestock Microbiology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil
| | - Eliana Gertrudes de Macedo Lemos
- Graduate Program in Agricultural and Livestock Microbiology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil; Molecular Biology Laboratory, Institute for Research in Bioenergy (IPBEN), São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil
| | - Daniel Guariz Pinheiro
- Laboratory of Bioinformatics, Department of Agricultural, Livestock and Environmental Biotechnology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil; Graduate Program in Agricultural and Livestock Microbiology, São Paulo State University (UNESP), School of Agricultural and Veterinary Sciences, Jaboticabal, SP, Brazil.
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11
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Maroniche GA, Puente ML, García JE, Mongiardini E, Coniglio A, Nievas S, Labarthe MM, Wisniewski-Dyé F, Rodriguez Cáceres E, Díaz-Zorita M, Cassán F. Phenogenetic profile and agronomic contribution of Azospirillum argentinense Az39 T, a reference strain for the South American inoculant industry. Microbiol Res 2024; 283:127650. [PMID: 38452553 DOI: 10.1016/j.micres.2024.127650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 02/07/2024] [Accepted: 02/12/2024] [Indexed: 03/09/2024]
Abstract
Azospirillum sp. is a plant growth-promoting rhizobacteria largely recognized for its potential to increase the yield of different important crops. In this work, we present a thorough genomic and phenotypic analysis of A. argentinense Az39T to provide new insights into the beneficial mechanisms of this microorganism. Phenotypic analyses revealed the following in vitro abilities: growth at 20-38 °C (optimum, 28 °C), pH 6.0-8.0 (optimum, pH 6.8), and in the presence of 1% (w/v) NaCl; production of variable amounts of PHB as intracellular granules; nitrogen fixation under microaerophilic conditions; IAA synthesis in the presence of L-tryptophan. Through biochemical (API 20NE) and carbon utilization profiling (Biolog) assays, we proved that A. argentinense Az39T is able to use 15 substrates and metabolize 19 different carbon substrates. Lipid composition indicated a predominance of medium and long-chain saturated fatty acids. A total of 6 replicons classified as one main chromosome, three chromids, and two plasmids, according to their tRNA and core essential genes contents, were identified. Az39T genome includes genes associated with multiple plant growth-promoting (PGP) traits such as nitrogen fixation and production of auxins, cytokinin, abscisic acid, ethylene, and polyamines. In addition, Az39T genome harbor genetic elements associated with physiological features that facilitate its survival in the soil and competence for rhizospheric colonization; this includes motility, secretion system, and quorum sensing genetic determinants. A metadata analysis of Az39T agronomic performance in the pampas region, Argentina, demonstrated significant grain yield increases in wheat and maize, proving its potential to provide better growth conditions for dryland cereals. In conclusion, our data provide a detailed insight into the metabolic profile of A. argentinense Az39T, the strain most widely used to formulate non-legume inoculants in Argentina, and allow a better understanding of the mechanisms behind its field performance.
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Affiliation(s)
- G A Maroniche
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata (UNMdP), CONICET, Balcarce, Buenos Aires, Argentina
| | - M L Puente
- Instituto de Microbiología y Zoología Agrícola, Instituto Nacional de Tecnología Agropecuaria (INTA), Hurlingham, Buenos Aires, Argentina
| | - J E García
- Instituto de Microbiología y Zoología Agrícola, Instituto Nacional de Tecnología Agropecuaria (INTA), Hurlingham, Buenos Aires, Argentina
| | - E Mongiardini
- Instituto de Biotecnología y Biología Molecular, Facultad de Ciencias Exactas, Universidad Nacional de La Plata (UNLP), CONICET, La Plata, Buenos Aires, Argentina
| | - A Coniglio
- Laboratorio de Fisiología Vegetal y de la Interacción Planta-Microorganismo, Instituto de Investigaciones Agrobiotecnológicas (INIAB-CONICET), Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba, Argentina
| | - S Nievas
- Laboratorio de Fisiología Vegetal y de la Interacción Planta-Microorganismo, Instituto de Investigaciones Agrobiotecnológicas (INIAB-CONICET), Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba, Argentina
| | - M M Labarthe
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata (UNMdP), CONICET, Balcarce, Buenos Aires, Argentina
| | - F Wisniewski-Dyé
- Universite Claude Bernard Lyon 1, Laboratoire d'Ecologie Microbienne, UMR CNRS 5557, UMR INRAE 1418, VetAgro Sup, Villeurbanne 69622, France
| | | | - M Díaz-Zorita
- Facultad de Agronomía, Universidad Nacional de La Pampa (UNLPam), CONICET, Santa Rosa, La Pampa, Argentina
| | - F Cassán
- Laboratorio de Fisiología Vegetal y de la Interacción Planta-Microorganismo, Instituto de Investigaciones Agrobiotecnológicas (INIAB-CONICET), Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba, Argentina.
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12
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Riaz A, Thomas J, Ali HH, Zaheer MS, Ahmad N, Pereira A. High night temperature stress on rice ( Oryza sativa) - insights from phenomics to physiology. A review. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP24057. [PMID: 38815128 DOI: 10.1071/fp24057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 05/12/2024] [Indexed: 06/01/2024]
Abstract
Rice (Oryza sativa ) faces challenges to yield and quality due to urbanisation, deforestation and climate change, which has exacerbated high night temperature (HNT). This review explores the impacts of HNT on the physiological, molecular and agronomic aspects of rice growth. Rise in minimum temperature threatens a potential 41% reduction in rice yield by 2100. HNT disrupts rice growth stages, causing reduced seed germination, biomass, spikelet sterility and poor grain development. Recent findings indicate a 4.4% yield decline for every 1°C increase beyond 27°C, with japonica ecotypes exhibiting higher sensitivity than indica. We examine the relationships between elevated CO2 , nitrogen regimes and HNT, showing that the complexity of balancing positive CO2 effects on biomass with HNT challenges. Nitrogen enrichment proves crucial during the vegetative stage but causes disruption to reproductive stages, affecting grain yield and starch synthesis. Additionally, we elucidate the impact of HNT on plant respiration, emphasising mitochondrial respiration, photorespiration and antioxidant responses. Genomic techniques, including CRISPR-Cas9, offer potential for manipulating genes for HNT tolerance. Plant hormones and carbohydrate enzymatic activities are explored, revealing their intricate roles in spikelet fertility, grain size and starch metabolism under HNT. Gaps in understanding genetic factors influencing heat tolerance and potential trade-offs associated with hormone applications remain. The importance of interdisciplinary collaboration is needed to provide a holistic approach. Research priorities include the study of regulatory mechanisms, post-anthesis effects, cumulative HNT exposure and the interaction between climate variability and HNT impact to provide a research direction to enhance rice resilience in a changing climate.
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Affiliation(s)
- Awais Riaz
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | - Julie Thomas
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | - Hafiz Haider Ali
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; and Department of Agriculture, Government College University Lahore, Lahore 54000, Pakistan; and Department of Plant Sciences, Aberdeen Research & Extension Center, University of Idaho, Aberdeen, ID, USA
| | - Muhammad Saqlain Zaheer
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Naushad Ahmad
- Department of Chemistry, College of Science, King Saud University, Riyadh11451, Saudi Arabia
| | - Andy Pereira
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
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13
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Cruz Nieto DD, Castañeda Chirre ET, Castro Bartolomé HJ, Legua Cárdenas JA, Nunja García JV, Vélez Chang YJ, Luque Vilca OM, Ito Díaz RR, Calizaya Llatasi FG, Leon Gomez R, Maldonado Mamani RA. Comparative study of the doses of cytokinin in the quality of caigua (Cyclanthera pedata L.) in Peru. BRAZ J BIOL 2023; 83:e275635. [PMID: 38126635 DOI: 10.1590/1519-6984.275635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 09/28/2023] [Indexed: 12/23/2023] Open
Abstract
Bioavailability of nutrients, the scarcity of synthetic fertilisers, and the rising cost of fuel have all contributed to an increase in production costs, which has in turn reduced crop productivity and led scientists to seek out new methods to ensure high-quality output. In this context, various cytokinins dosages were tested in Peru to see whether they affected the quality of caigua, in an effort to address these issues. To mitigate these problems, a pot experiment was carried out to check the effects of various doses of cytokinin in the quality of caigua in Peru. The experiment consisted of 5 treatments including (0, 50, 100, 150 and 200 mL of cytokinin) by using (Anthesis Plus per 200 L of water) as a source, each with three replicates and placed following a randomized complete block design (RCBD). Treatment with 100 mL of cytokinins foliar analysis resulted in a caigua length of 18.9 cm, an increase in diameter of 5.65 cm, and an improvement in pulp thickness of 7.60 millimeters. Physiological parameters of caigua plants taken after 45 days of sowing were considerably improved with the same treatment. Similarly, N, K and Zn concentration in leaf was higher in case of 100 mL of cytokinins foliar analysis. Therefore, policymakers must advise using the recommended quantity of cytokinins to bring about regime transition, and formers can gain by injecting 100 mL of cytokinins to boost production and the economy. It was concluded that the adequate dose of cytokinins is in treatment T3, which raised value of potassium concentration in leaves, this influenced optimal development, strengthening against environmental stress and therefore quality. For this reason, research was carried out on the comparative study of cytokinin doses in the quality of caigua in Peru; the objective was to determine the appropriate dose to obtain higher quality fruit. Likewise, it was underlined that the objective was to employ an ecological alternative of plant origin such as the usage of phytohormone that stimulates the growth of the plant and consequently the quality of the fruit. The obtained the results were served as a recommendation for farmers in the area.
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Affiliation(s)
- D D Cruz Nieto
- Universidad Nacional José Faustino Sánchez Carrión, Huacho, Perú
| | | | | | | | - J V Nunja García
- Universidad Nacional José Faustino Sánchez Carrión, Huacho, Perú
| | - Y J Vélez Chang
- Universidad Nacional José Faustino Sánchez Carrión, Huacho, Perú
| | | | | | | | - R Leon Gomez
- Universidad Nacional de Huancavelica, Huancavelica, Perú
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14
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Wippel K. Plant and microbial features governing an endophytic lifestyle. CURRENT OPINION IN PLANT BIOLOGY 2023; 76:102483. [PMID: 37939457 DOI: 10.1016/j.pbi.2023.102483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 10/06/2023] [Accepted: 10/13/2023] [Indexed: 11/10/2023]
Abstract
Beneficial microorganisms colonizing internal plant tissues, the endophytes, support their host through plant growth promotion, pathogen protection, and abiotic stress alleviation. Their efficient application in agriculture requires the understanding of the molecular mechanisms and environmental conditions that facilitate in planta accommodation. Accumulating evidence reveals that commensal microorganisms employ similar colonization strategies as their pathogenic counterparts. Fine-tuning of immune response, motility, and metabolic crosstalk accounts for their differentiation. For a holistic perspective, in planta experiments with microbial collections and comprehensive genome data exploration are crucial. This review describes the most recent findings on factors involved in endophytic colonization processes, focusing on bacteria and fungi, and discusses required methodological approaches to unravel their relevance within a community context.
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Affiliation(s)
- Kathrin Wippel
- Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.
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15
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Zhang H, Ou X, Chen W, Zeng Q, Yan Y, He M, Yan H. Comparative physicochemical, hormonal, transcriptomic and proteomic analyses provide new insights into the formation mechanism of two chemotypes of Pogostemon cablin. PLoS One 2023; 18:e0290402. [PMID: 37738267 PMCID: PMC10516424 DOI: 10.1371/journal.pone.0290402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 08/08/2023] [Indexed: 09/24/2023] Open
Abstract
Patchouli (Pogostemon cablin) is an aromatic plant, and its oil has diverse applications in medicine, food, and cosmetics. Patchouli alcohol is the principal bioactive constituent of its volatile oil. In China, patchouli is typically categorized into two types: patchoulol-type (PA-type) and pogostone-type (PO-type). The study evaluated physiological and biochemical indicators, phytohormone metabolites and conducted transcriptome and proteome analyses on both two chemotypes. The PA-type exhibited higher levels of chlorophyll a, b, and carotenoids than the PO-type. In total, 35 phytohormone metabolites representing cytokinin, abscisic acid, gibberellin, jasmonic acid, and their derivatives were identified using UPLC-MS/MS, 10 of which displayed significant differences, mainly belong to cytokinins and jasmonates. Transcriptome analysis identified 4,799 differentially expressed genes (DEGs), while proteome analysis identified 150 differentially expressed proteins (DEPs). Regarding the transcriptome results, the DEGs of the PO-type showed significant downregulation in the pathways of photosynthesis, photosynthesis-antenna protein, porphyrin and chlorophyll metabolism, carotenoid biosynthesis, sesquiterpene and triterpenoid biosynthesis, and starch and sucrose metabolism, but upregulation in the pathway of zeatin synthesis. A combination of transcriptome and proteome analyses revealed that the DEGs and DEPs of lipoxygenase (LOX2), β-glucosidase, and patchouli synthase (PTS) were collectively downregulated, while the DEGs and DEPs of Zeatin O-xylosyltransferase (ZOX1) and α-amylase (AMY) were jointly upregulated in the PO-type compared to the PA-type. Differential levels of phytohormones, variations in photosynthetic efficiency, and differential expression of genes in the sesquiterpene synthesis pathway may account for the morphological and major active component differences between the two chemotypes of patchouli. The findings of this study offer novel perspectives on the underlying mechanisms contributing to the formation of the two patchouli chemotypes.
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Affiliation(s)
- Hongyi Zhang
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
- Key Laboratory of State Administration of Traditional Chinese Medicine for Production & Development of Cantonese Medicinal Materials, Guangzhou, China
- Guangdong Provincial Research Center on Good Agricultural Practice & Comprehensive Agricultural Development Engineering Technology of Cantonese Medicinal Materials, Guangzhou, China
| | - Xiaohua Ou
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
| | - Wenyi Chen
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
| | - Qing Zeng
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
| | - Yaling Yan
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
| | - Mengling He
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
- Key Laboratory of State Administration of Traditional Chinese Medicine for Production & Development of Cantonese Medicinal Materials, Guangzhou, China
- Guangdong Provincial Research Center on Good Agricultural Practice & Comprehensive Agricultural Development Engineering Technology of Cantonese Medicinal Materials, Guangzhou, China
| | - Hanjing Yan
- College of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China
- Key Laboratory of State Administration of Traditional Chinese Medicine for Production & Development of Cantonese Medicinal Materials, Guangzhou, China
- Guangdong Provincial Research Center on Good Agricultural Practice & Comprehensive Agricultural Development Engineering Technology of Cantonese Medicinal Materials, Guangzhou, China
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16
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Ali HH, Shehzadi N, Zaheer MS, Seleiman MF, Aldhuwaib KJ, Din Khan WU, Raza A. Exploring the Impact of Salicylic Acid and Farmyard Manure on Soil Rhizospheric Properties and Cadmium Stress Alleviation in Maize ( Zea mays L.). PLANTS (BASEL, SWITZERLAND) 2023; 12:3115. [PMID: 37687361 PMCID: PMC10490018 DOI: 10.3390/plants12173115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 08/04/2023] [Accepted: 08/28/2023] [Indexed: 09/10/2023]
Abstract
Cadmium (Cd) pollution is a growing environmental problem that negatively impacts plant growth and development, particularly in maize. In this research, the impact of farmyard manure (FYM) and salicylic acid (SA) on rhizospheric characteristics and the reduction of Cd stress in maize was examined at Government College (GC) University, Lahore, in 2022. The experiment was arranged with a randomized design, including three replications of 12 treatments (T1 = Control; T2 = Farmyard manure; T3 = Salicylic Acid; T4 = 100 mg/kg of soil Cd; T5 = 200 mg/kg of soil Cd; T6 = Farmyard manure + Salicylic acid; T7 = FYM + 100 mg/kg soil Cd; T8 = FYM + 200 mg/kg soil Cd; T9 = SA + 100 mg/kg soil Cd; T10 = SA + 200 mg/kg soil Cd; T11 = FYM + SA + 100 mg/kg soil Cd; T12 = FYM + SA + 200 mg/kg soil Cd). Results demonstrated that Cd stress negatively affected the maize plant and soil properties, but the application of SA and FYM was effective to mitigate the Cd stress up to a certain level. A reduction of 41.52%, 39.14%, and 39.94% in root length, length of the leaf, and crop growth rate was noticed, due to the Cd stress at 200 mg/kg soil, but this reduction was reduced to 18.83%, 10.35%, and 12.26%, respectively, when FYM and salicylic acid were applied as a combined application under the same stress level of Cd. The root biomass, leaf surface area, and length were all improved by SA and FYM, which enhanced the plant's capacity to absorb nutrients and improve growth under Cd stress. In conclusion, the use of salicylic acid together with farm manure can be an effective approach to mitigate Cd stress in maize crops.
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Affiliation(s)
- Hafiz Haider Ali
- Department of Agriculture, Government College University, Lahore 54000, Pakistan;
| | - Nimra Shehzadi
- Sustainable Development Study Center (SDSC), Government College University, Lahore 54000, Pakistan;
| | - Muhammad Saqlain Zaheer
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan 64200, Pakistan
| | - Mahmoud F. Seleiman
- Department of Plant Production, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia;
| | | | - Waqas ud Din Khan
- Department of Agriculture, Government College University, Lahore 54000, Pakistan;
| | - Ali Raza
- Department of Agronomy, University of Sargodha, Sargodha 40100, Pakistan;
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17
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Chieb M, Gachomo EW. The role of plant growth promoting rhizobacteria in plant drought stress responses. BMC PLANT BIOLOGY 2023; 23:407. [PMID: 37626328 PMCID: PMC10464363 DOI: 10.1186/s12870-023-04403-8] [Citation(s) in RCA: 62] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Accepted: 08/07/2023] [Indexed: 08/27/2023]
Abstract
Climate change has exacerbated the effects of abiotic stresses on plant growth and productivity. Drought is one of the most important abiotic stress factors that interfere with plant growth and development. Plant selection and breeding as well as genetic engineering methods used to improve crop drought tolerance are expensive and time consuming. Plants use a myriad of adaptative mechanisms to cope with the adverse effects of drought stress including the association with beneficial microorganisms such as plant growth promoting rhizobacteria (PGPR). Inoculation of plant roots with different PGPR species has been shown to promote drought tolerance through a variety of interconnected physiological, biochemical, molecular, nutritional, metabolic, and cellular processes, which include enhanced plant growth, root elongation, phytohormone production or inhibition, and production of volatile organic compounds. Therefore, plant colonization by PGPR is an eco-friendly agricultural method to improve plant growth and productivity. Notably, the processes regulated and enhanced by PGPR can promote plant growth as well as enhance drought tolerance. This review addresses the current knowledge on how drought stress affects plant growth and development and describes how PGPR can trigger plant drought stress responses at the physiological, morphological, and molecular levels.
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Affiliation(s)
- Maha Chieb
- Department of Microbiology and Plant Pathology, University of California Riverside, Riverside, CA, 92507, USA
| | - Emma W Gachomo
- Department of Microbiology and Plant Pathology, University of California Riverside, Riverside, CA, 92507, USA.
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18
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Aloo BN, Dessureault-Rompré J, Tripathi V, Nyongesa BO, Were BA. Signaling and crosstalk of rhizobacterial and plant hormones that mediate abiotic stress tolerance in plants. Front Microbiol 2023; 14:1171104. [PMID: 37455718 PMCID: PMC10347528 DOI: 10.3389/fmicb.2023.1171104] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 06/15/2023] [Indexed: 07/18/2023] Open
Abstract
Agricultural areas exhibiting numerous abiotic stressors, such as elevated water stress, temperatures, and salinity, have grown as a result of climate change. As such, abiotic stresses are some of the most pressing issues in contemporary agricultural production. Understanding plant responses to abiotic stressors is important for global food security, climate change adaptation, and improving crop resilience for sustainable agriculture, Over the decades, explorations have been made concerning plant tolerance to these environmental stresses. Plant growth-promoting rhizobacteria (PGPR) and their phytohormones are some of the players involved in developing resistance to abiotic stress in plants. Several studies have investigated the part of phytohormones in the ability of plants to withstand and adapt to non-living environmental factors, but very few have focused on rhizobacterial hormonal signaling and crosstalk that mediate abiotic stress tolerance in plants. The main objective of this review is to evaluate the functions of PGPR phytohormones in plant abiotic stress tolerance and outline the current research on rhizobacterial hormonal communication and crosstalk that govern plant abiotic stress responses. The review also includes the gene networks and regulation under diverse abiotic stressors. The review is important for understanding plant responses to abiotic stresses using PGPR phytohormones and hormonal signaling. It is envisaged that PGPR offer a useful approach to increasing plant tolerance to various abiotic stresses. However, further studies can reveal the unclear patterns of hormonal interactions between plants and rhizobacteria that mediate abiotic stress tolerance.
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Affiliation(s)
- B. N. Aloo
- Department of Biological Sciences, University of Eldoret, Eldoret, Kenya
| | | | - V. Tripathi
- Department of Biotechnology, Graphic Era (Deemed to be University), Dehradun, Uttarakhand, India
| | - B. O. Nyongesa
- Department of Biological Sciences, University of Eldoret, Eldoret, Kenya
| | - B. A. Were
- Department of Biological Sciences, University of Eldoret, Eldoret, Kenya
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19
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Mei W, Chen W, Wang Y, Liu Z, Dong Y, Zhang G, Deng H, Liu X, Lu X, Wang F, Chen G, Tang W, Xiao Y. Exogenous Kinetin Modulates ROS Homeostasis to Affect Heat Tolerance in Rice Seedlings. Int J Mol Sci 2023; 24:ijms24076252. [PMID: 37047228 PMCID: PMC10093947 DOI: 10.3390/ijms24076252] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Revised: 03/20/2023] [Accepted: 03/24/2023] [Indexed: 03/29/2023] Open
Abstract
Heat stress caused by rapidly changing climate warming has become a serious threat to crop growth worldwide. Exogenous cytokinin (CK) kinetin (KT) has been shown to have positive effects in improving salt and drought tolerance in plants. However, the mechanism of KT in heat tolerance in rice is poorly understood. Here, we found that exogenously adequate application of KT improved the heat stress tolerance of rice seedlings, with the best effect observed when the application concentration was 10−9 M. In addition, exogenous application of 10−9 M KT promoted the expression of CK-responsive OsRR genes, reduced membrane damage and reactive oxygen species (ROS) accumulation in rice, and increased the activity of antioxidant enzymes. Meanwhile, exogenous 10−9 M KT treatment significantly enhanced the expression of antioxidant enzymes, heat activation, and defense-related genes. In conclusion, exogenous KT treatment regulates heat tolerance in rice seedlings by modulating the dynamic balance of ROS in plants under heat stress.
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20
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Huang X, Zeng Z, Chen Z, Tong X, Jiang J, He C, Xiang T. Deciphering the potential of a plant growth promoting endophyte Rhizobium sp. WYJ-E13, and functional annotation of the genes involved in the metabolic pathway. Front Microbiol 2022; 13:1035167. [PMID: 36406393 PMCID: PMC9671153 DOI: 10.3389/fmicb.2022.1035167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 10/17/2022] [Indexed: 09/24/2023] Open
Abstract
Plant growth-promoting rhizobacteria (PGPR) are well-acknowledged root endophytic bacteria used for plant growth promotion. However, which metabolites produced by PGPR could promote plant growth remains unclear. Additionally, which genes are responsible for plant growth-promoting traits is also not elucidated. Thus, as comprehensive understanding of the mechanism of endophyte in growth promotion is limited, this study aimed to determine the metabolites and genes involved in plant growth-promotion. We isolated an endophytic Rhizobium sp. WYJ-E13 strain from the roots of Curcuma wenyujin Y.H. Chen et C. Ling, a perennial herb and medicinal plant. The tissue culture experiment showed its plant growth-promoting ability. The bacterium colonization in the root was confirmed by scanning electron microscopy and paraffin sectioning. Furthermore, it was noted that the WYJ-E13 strain produced cytokinin, anthranilic acid, and L-phenylalanine by metabolome analysis. Whole-genome analysis of the strain showed that it consists of a circular chromosome of 4,350,227 bp with an overall GC content of 60.34%, of a 2,149,667 bp plasmid1 with 59.86% GC, and of a 406,180 bp plasmid2 with 58.05% GC. Genome annotation identified 4,349 putative protein-coding genes, 51 tRNAs, and 9 rRNAs. The CDSs number allocated to the Kyoto Encyclopedia of Genes and Genomes, Gene Ontology, and Clusters of Orthologous Genes databases were 2027, 3,175 and 3,849, respectively. Comparative genome analysis displayed that Rhizobium sp. WYJ-E13 possesses the collinear region among three species: Rhizobium acidisoli FH23, Rhizobium gallicum R602 and Rhizobium phaseoli R650. We recognized a total set of genes that are possibly related to plant growth promotion, including genes involved in nitrogen metabolism (nifU, gltA, gltB, gltD, glnA, glnD), hormone production (trp ABCDEFS), sulfur metabolism (cysD, cysE, cysK, cysN), phosphate metabolism (pstA, pstC, phoB, phoH, phoU), and root colonization. Collectively, these findings revealed the roles of WYJ-E13 strain in plant growth-promotion. To the best of our knowledge, this was the first study using whole-genome sequencing for Rhizobium sp. WYJ-E13 associated with C. wenyujin. WYJ-E13 strain has a high potential to be used as Curcuma biofertilizer for sustainable agriculture.
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Affiliation(s)
- Xiaoping Huang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
- Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou, China
| | - Zhanghui Zeng
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
- Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou, China
| | - Zhehao Chen
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
- Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou, China
| | - Xiaxiu Tong
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
| | - Jie Jiang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
| | - Chenjing He
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
| | - Taihe Xiang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
- Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou, China
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Verma PK, Verma S, Pandey N. Root system architecture in rice: impacts of genes, phytohormones and root microbiota. 3 Biotech 2022; 12:239. [PMID: 36016841 PMCID: PMC9395555 DOI: 10.1007/s13205-022-03299-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 08/01/2022] [Indexed: 11/28/2022] Open
Abstract
To feed the continuously expanding world's population, new crop varieties have been generated, which significantly contribute to the world's food security. However, the growth of these improved plant varieties relies primarily on synthetic fertilizers, which negatively affect the environment and human health; therefore, continuous improvement is needed for sustainable agriculture. Several plants, including cereal crops, have the adaptive capability to combat adverse environmental changes by altering physiological and molecular mechanisms and modifying their root system to improve nutrient uptake efficiency. These plants operate distinct pathways at various developmental stages to optimally establish their root system. These processes include changes in the expression profile of genes, changes in phytohormone level, and microbiome-induced root system architecture (RSA) modification. Several studies have been performed to understand microbial colonization and their involvement in RSA improvement through changes in phytohormone and transcriptomic levels. This review highlights the impact of genes, phytohormones, and particularly root microbiota in influencing RSA and provides new insights resulting from recent studies on rice root as a model system and summarizes the current knowledge about biochemical and central molecular mechanisms.
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Affiliation(s)
- Pankaj Kumar Verma
- Department of Botany, University of Lucknow, Lucknow, India
- Present Address: French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Israel
| | - Shikha Verma
- Present Address: French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Israel
| | - Nalini Pandey
- Department of Botany, University of Lucknow, Lucknow, India
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